Wall clock time and date at job start Wed Apr 1 2020 04:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99885 * 2 1 4 4 H 1.48497 * 109.46978 * 270.00057 * 3 2 1 5 5 H 1.48501 * 109.47243 * 29.99713 * 3 2 1 6 6 H 1.48494 * 109.47215 * 150.00137 * 3 2 1 7 7 C 1.37871 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99896 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00090 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.46963 * 176.96191 * 9 7 2 11 11 C 1.46903 * 111.00086 * 296.97773 * 10 9 7 12 12 C 1.53235 * 109.33849 * 187.25822 * 11 10 9 13 13 N 1.47088 * 108.52184 * 306.16709 * 12 11 10 14 14 C 1.34776 * 120.88055 * 231.19217 * 13 12 11 15 15 O 1.21724 * 119.99918 * 14.31455 * 14 13 12 16 16 C 1.46420 * 119.99565 * 194.31476 * 14 13 12 17 17 C 1.36814 * 125.99527 * 188.38387 * 16 14 13 18 18 N 1.30366 * 115.31083 * 179.70349 * 17 16 14 19 19 C 1.30927 * 117.31438 * 0.53619 * 18 17 16 20 20 C 1.46866 * 125.28315 * 179.76822 * 19 18 17 21 21 C 1.36421 * 125.97783 * 359.68732 * 20 19 18 22 22 C 1.40612 * 106.71898 * 180.02562 * 21 20 19 23 23 C 1.34954 * 107.08959 * 359.97438 * 22 21 20 24 24 O 1.34163 * 108.74710 * 0.26378 * 23 22 21 25 25 S 1.76119 * 109.42659 * 359.49618 * 19 18 17 26 26 C 1.47077 * 118.23522 * 51.45883 * 13 12 11 27 27 C 1.46901 * 111.00129 * 61.28158 * 10 9 7 28 28 H 0.97000 * 120.00129 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46951 * 56.96257 * 9 7 2 30 30 H 1.08997 * 109.47047 * 296.96403 * 9 7 2 31 31 H 1.08994 * 109.49235 * 67.29379 * 11 10 9 32 32 H 1.08996 * 109.51088 * 307.22864 * 11 10 9 33 33 H 1.09002 * 109.62871 * 186.45967 * 12 11 10 34 34 H 1.08998 * 109.63056 * 65.87691 * 12 11 10 35 35 H 1.08002 * 122.34961 * 359.97438 * 17 16 14 36 36 H 1.08004 * 126.63997 * 0.03300 * 21 20 19 37 37 H 1.08001 * 126.45524 * 180.02562 * 22 21 20 38 38 H 1.07999 * 125.62344 * 180.02562 * 23 22 21 39 39 H 1.09001 * 109.62706 * 68.25083 * 26 13 12 40 40 H 1.09001 * 109.62795 * 188.83426 * 26 13 12 41 41 H 1.08996 * 109.49347 * 292.70160 * 27 10 9 42 42 H 1.09000 * 109.49437 * 52.78235 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5770 0.0741 11 6 3.5906 -3.2141 1.3325 12 6 4.2683 -4.5831 1.4528 13 7 3.9739 -5.3586 0.2381 14 6 3.4815 -6.6106 0.3191 15 8 3.0315 -7.0206 1.3732 16 6 3.4878 -7.4774 -0.8609 17 6 2.8804 -8.6989 -0.9646 18 7 3.0142 -9.2918 -2.1179 19 6 3.7127 -8.6713 -3.0350 20 6 3.9775 -9.1785 -4.3876 21 6 3.5463 -10.3688 -4.8958 22 6 4.0280 -10.4438 -6.2147 23 6 4.7218 -9.3101 -6.4486 24 8 4.6938 -8.5515 -5.3424 25 16 4.2788 -7.1303 -2.3973 26 6 4.2369 -4.7337 -1.0671 27 6 3.5549 -3.3565 -1.0883 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6331 0.8610 30 1 3.8745 -0.7286 -0.9164 31 1 2.5082 -3.3421 1.3390 32 1 3.8877 -2.5861 2.1723 33 1 3.8802 -5.1084 2.3255 34 1 5.3458 -4.4510 1.5507 35 1 2.3250 -9.1392 -0.1496 36 1 2.9503 -11.1101 -4.3842 37 1 3.8714 -11.2553 -6.9099 38 1 5.2207 -9.0572 -7.3724 39 1 5.3114 -4.6158 -1.2067 40 1 3.8279 -5.3585 -1.8612 41 1 2.4731 -3.4826 -1.0480 42 1 3.8265 -2.8316 -2.0042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602208179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:48 Heat of formation + Delta-G solvation = 57.468602 kcal Electronic energy + Delta-G solvation = -27285.681005 eV Core-core repulsion = 23360.412932 eV Total energy + Delta-G solvation = -3925.268072 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.96161 -40.30837 -39.36595 -37.58358 -34.67969 -33.54613 -32.45197 -32.06024 -30.96087 -29.50775 -28.49291 -26.23581 -25.37363 -23.70615 -22.75601 -22.21747 -21.86972 -21.17740 -19.79276 -19.48738 -18.22349 -17.60004 -16.91798 -16.61352 -16.53706 -16.25888 -15.54746 -15.28793 -14.72871 -14.61399 -14.56846 -14.30116 -14.13954 -13.77153 -13.44722 -13.33675 -13.22966 -12.94933 -12.66246 -12.55326 -12.42249 -11.85067 -11.51882 -11.34581 -11.18911 -10.74022 -10.60198 -10.49341 -10.41246 -10.17892 -10.08464 -9.97948 -9.88130 -9.62831 -9.37961 -8.68385 -8.66240 -8.30914 -7.41495 -6.18355 -4.20102 -0.37888 0.83228 1.26188 1.29821 2.07541 2.17364 2.56720 2.90567 3.10555 3.21379 3.29854 3.31839 3.95664 4.31536 4.39601 4.53308 4.56226 4.63642 4.67237 4.98056 5.03957 5.12929 5.27851 5.31882 5.38921 5.43859 5.53415 5.56283 5.70922 5.80034 5.83915 5.92484 6.00617 6.20887 6.47356 6.53076 6.55119 6.63569 6.79936 6.93598 7.24045 7.35420 7.43830 7.84721 7.86081 8.02697 8.33968 8.82717 9.43109 10.94394 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014925 B = 0.002637 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.606687 B =10613.744594 C =11622.498180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.557 4.557 8 H 0.074 0.926 9 C 0.154 3.846 10 N -0.533 5.533 11 C 0.047 3.953 12 C 0.120 3.880 13 N -0.605 5.605 14 C 0.596 3.404 15 O -0.527 6.527 16 C -0.286 4.286 17 C 0.126 3.874 18 N -0.461 5.461 19 C 0.115 3.885 20 C 0.028 3.972 21 C -0.129 4.129 22 C -0.219 4.219 23 C -0.010 4.010 24 O -0.166 6.166 25 S 0.202 5.798 26 C 0.105 3.895 27 C 0.052 3.948 28 H 0.265 0.735 29 H 0.033 0.967 30 H 0.027 0.973 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.193 0.807 36 H 0.161 0.839 37 H 0.157 0.843 38 H 0.213 0.787 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.053 0.947 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.105 -18.501 -10.817 24.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.595 4.595 8 H 0.092 0.908 9 C 0.028 3.972 10 N -0.257 5.257 11 C -0.083 4.083 12 C -0.002 4.002 13 N -0.338 5.338 14 C 0.383 3.617 15 O -0.405 6.405 16 C -0.411 4.411 17 C -0.033 4.033 18 N -0.176 5.176 19 C -0.154 4.154 20 C -0.024 4.024 21 C -0.154 4.154 22 C -0.238 4.238 23 C -0.080 4.080 24 O -0.062 6.062 25 S 0.463 5.537 26 C -0.020 4.020 27 C -0.077 4.077 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.209 0.791 36 H 0.178 0.822 37 H 0.175 0.825 38 H 0.229 0.771 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.776 -17.893 -10.723 24.462 hybrid contribution -1.223 0.460 0.377 1.360 sum 11.553 -17.433 -10.346 23.333 Atomic orbital electron populations 1.69929 1.06418 1.27141 1.49894 1.24980 0.94700 0.99284 0.94020 0.86788 0.80391 0.83499 0.78665 1.20149 1.21247 1.18757 1.21661 0.90559 0.94728 1.52567 0.90823 1.20219 0.94747 0.85004 0.97242 1.62420 1.58600 1.03932 1.00719 1.22295 0.99197 0.93023 0.93746 1.21914 1.00238 0.91702 0.86335 1.47969 1.63862 1.13426 1.08566 1.16653 0.77926 0.80966 0.86153 1.90833 1.45592 1.74588 1.29497 1.26076 1.12401 1.02883 0.99710 1.22233 0.96927 0.90054 0.94115 1.66413 1.16985 1.33738 1.00484 1.24762 1.00360 0.96085 0.94174 1.18620 1.02390 0.93853 0.87579 1.21993 1.01738 0.96787 0.94853 1.21880 1.03874 1.00494 0.97560 1.24364 1.02690 0.91247 0.89683 1.84057 1.57552 1.44128 1.20417 1.85446 1.49169 1.14471 1.04608 1.22380 1.01562 0.94880 0.83142 1.22299 0.98700 0.91062 0.95666 0.92560 0.94859 0.95485 0.92961 0.89989 0.88934 0.90862 0.79064 0.82156 0.82506 0.77081 0.89974 0.90790 0.92843 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.96 55.43 0.77 -26.08 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 20.70 27.53 -169.99 -4.68 16.02 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -5.91 6.45 56.52 0.36 -5.54 16 7 C -0.56 -14.91 8.31 -34.44 -0.29 -15.20 16 8 H 0.07 2.18 6.11 -52.49 -0.32 1.86 16 9 C 0.15 3.48 4.19 -4.98 -0.02 3.46 16 10 N -0.53 -10.22 4.83 -235.47 -1.14 -11.35 16 11 C 0.05 0.85 5.21 -3.70 -0.02 0.83 16 12 C 0.12 1.85 6.62 -3.60 -0.02 1.82 16 13 N -0.61 -9.43 3.00 -173.81 -0.52 -9.95 16 14 C 0.60 9.65 7.59 -12.97 -0.10 9.55 16 15 O -0.53 -9.83 16.40 5.17 0.08 -9.75 16 16 C -0.29 -3.97 6.20 -36.81 -0.23 -4.20 16 17 C 0.13 1.65 11.05 -18.69 -0.21 1.45 16 18 N -0.46 -5.99 10.47 -11.00 -0.12 -6.10 16 19 C 0.11 1.40 7.44 -14.45 -0.11 1.29 16 20 C 0.03 0.31 7.21 -36.75 -0.26 0.04 16 21 C -0.13 -1.19 10.79 -39.34 -0.42 -1.62 16 22 C -0.22 -1.49 10.88 -39.85 -0.43 -1.93 16 23 C -0.01 -0.06 12.08 29.57 0.36 0.30 16 24 O -0.17 -1.60 10.67 4.63 0.05 -1.55 16 25 S 0.20 2.34 18.89 -107.50 -2.03 0.31 16 26 C 0.11 1.49 5.49 -3.36 -0.02 1.47 16 27 C 0.05 0.92 5.20 -3.46 -0.02 0.90 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.03 0.76 6.94 -51.93 -0.36 0.40 16 30 H 0.03 0.60 7.71 -51.93 -0.40 0.20 16 31 H 0.05 1.13 6.96 -51.93 -0.36 0.77 16 32 H 0.08 1.43 8.08 -51.93 -0.42 1.01 16 33 H 0.09 1.43 7.07 -51.93 -0.37 1.07 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.19 2.25 8.06 -52.49 -0.42 1.82 16 36 H 0.16 1.35 8.06 -52.48 -0.42 0.93 16 37 H 0.16 0.66 8.06 -52.49 -0.42 0.23 16 38 H 0.21 0.45 8.06 -52.49 -0.42 0.03 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.08 0.98 3.73 -21.09 -0.08 0.90 16 41 H 0.05 1.11 6.74 -51.93 -0.35 0.76 16 42 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 LS Contribution 358.42 15.07 5.40 5.40 Total: -1.00 -32.76 358.42 -8.85 -41.61 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -4.79 Total: 1.33 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.89 Total: 0.12 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -1.00 Total: -53.49 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.13 Total: -11.30 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.68 Total: 16.02 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.03 Total: 0.31 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.76 -8.85 -41.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602208179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.083 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds