Wall clock time and date at job start Wed Apr 1 2020 04:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99885 * 2 1 4 4 H 1.48497 * 109.46978 * 270.00057 * 3 2 1 5 5 H 1.48501 * 109.47243 * 29.99713 * 3 2 1 6 6 H 1.48494 * 109.47215 * 150.00137 * 3 2 1 7 7 C 1.37871 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99896 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00090 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.46963 * 176.96191 * 9 7 2 11 11 C 1.46903 * 111.00086 * 296.97773 * 10 9 7 12 12 C 1.53235 * 109.33849 * 187.25822 * 11 10 9 13 13 N 1.47088 * 108.52184 * 306.16709 * 12 11 10 14 14 C 1.34776 * 120.88055 * 231.19217 * 13 12 11 15 15 O 1.21724 * 119.99918 * 14.31455 * 14 13 12 16 16 C 1.46420 * 119.99565 * 194.31476 * 14 13 12 17 17 C 1.36814 * 125.99527 * 188.38387 * 16 14 13 18 18 N 1.30366 * 115.31083 * 179.70349 * 17 16 14 19 19 C 1.30927 * 117.31438 * 0.53619 * 18 17 16 20 20 C 1.46866 * 125.28315 * 179.76822 * 19 18 17 21 21 C 1.36421 * 125.97783 * 359.68732 * 20 19 18 22 22 C 1.40612 * 106.71898 * 180.02562 * 21 20 19 23 23 C 1.34954 * 107.08959 * 359.97438 * 22 21 20 24 24 O 1.34163 * 108.74710 * 0.26378 * 23 22 21 25 25 S 1.76119 * 109.42659 * 359.49618 * 19 18 17 26 26 C 1.47077 * 118.23522 * 51.45883 * 13 12 11 27 27 C 1.46901 * 111.00129 * 61.28158 * 10 9 7 28 28 H 0.97000 * 120.00129 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46951 * 56.96257 * 9 7 2 30 30 H 1.08997 * 109.47047 * 296.96403 * 9 7 2 31 31 H 1.08994 * 109.49235 * 67.29379 * 11 10 9 32 32 H 1.08996 * 109.51088 * 307.22864 * 11 10 9 33 33 H 1.09002 * 109.62871 * 186.45967 * 12 11 10 34 34 H 1.08998 * 109.63056 * 65.87691 * 12 11 10 35 35 H 1.08002 * 122.34961 * 359.97438 * 17 16 14 36 36 H 1.08004 * 126.63997 * 0.03300 * 21 20 19 37 37 H 1.08001 * 126.45524 * 180.02562 * 22 21 20 38 38 H 1.07999 * 125.62344 * 180.02562 * 23 22 21 39 39 H 1.09001 * 109.62706 * 68.25083 * 26 13 12 40 40 H 1.09001 * 109.62795 * 188.83426 * 26 13 12 41 41 H 1.08996 * 109.49347 * 292.70160 * 27 10 9 42 42 H 1.09000 * 109.49437 * 52.78235 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5770 0.0741 11 6 3.5906 -3.2141 1.3325 12 6 4.2683 -4.5831 1.4528 13 7 3.9739 -5.3586 0.2381 14 6 3.4815 -6.6106 0.3191 15 8 3.0315 -7.0206 1.3732 16 6 3.4878 -7.4774 -0.8609 17 6 2.8804 -8.6989 -0.9646 18 7 3.0142 -9.2918 -2.1179 19 6 3.7127 -8.6713 -3.0350 20 6 3.9775 -9.1785 -4.3876 21 6 3.5463 -10.3688 -4.8958 22 6 4.0280 -10.4438 -6.2147 23 6 4.7218 -9.3101 -6.4486 24 8 4.6938 -8.5515 -5.3424 25 16 4.2788 -7.1303 -2.3973 26 6 4.2369 -4.7337 -1.0671 27 6 3.5549 -3.3565 -1.0883 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6331 0.8610 30 1 3.8745 -0.7286 -0.9164 31 1 2.5082 -3.3421 1.3390 32 1 3.8877 -2.5861 2.1723 33 1 3.8802 -5.1084 2.3255 34 1 5.3458 -4.4510 1.5507 35 1 2.3250 -9.1392 -0.1496 36 1 2.9503 -11.1101 -4.3842 37 1 3.8714 -11.2553 -6.9099 38 1 5.2207 -9.0572 -7.3724 39 1 5.3114 -4.6158 -1.2067 40 1 3.8279 -5.3585 -1.8612 41 1 2.4731 -3.4826 -1.0480 42 1 3.8265 -2.8316 -2.0042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602208179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:47 Heat of formation + Delta-G solvation = 33.572949 kcal Electronic energy + Delta-G solvation = -27286.717198 eV Core-core repulsion = 23360.412932 eV Total energy + Delta-G solvation = -3926.304266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.60003 -41.52225 -40.45391 -39.02708 -36.20099 -34.42787 -34.19990 -33.09037 -32.14912 -30.78718 -29.85997 -27.56382 -26.61124 -25.01482 -24.16163 -23.33700 -22.53527 -22.44511 -21.11925 -20.38541 -19.52871 -18.87515 -18.41254 -17.67278 -17.31967 -17.28681 -16.74041 -16.53872 -16.31174 -16.11055 -15.85933 -15.47240 -15.36390 -14.94030 -14.89330 -14.47471 -14.07511 -13.99461 -13.94184 -13.84970 -13.51549 -13.30696 -13.05229 -12.80709 -12.61462 -12.37330 -12.19631 -12.02847 -11.86107 -11.70243 -11.38316 -11.23776 -10.92943 -10.81530 -10.77254 -10.34748 -9.95285 -9.15995 -9.07098 -8.33279 -6.40294 -1.32491 -0.12306 0.28379 0.51002 1.32847 1.36711 1.38709 1.48964 1.50087 1.66076 1.73898 1.99247 2.33074 3.02047 3.13720 3.15851 3.35514 3.67002 3.75253 3.94199 3.97721 3.99645 4.10310 4.15878 4.24035 4.35910 4.48251 4.60710 4.61174 4.76791 4.88446 4.94322 4.94876 4.98406 5.01284 5.03133 5.10688 5.29052 5.44802 5.44901 5.90657 5.94815 6.11161 6.23872 6.26427 6.35852 6.66943 6.77764 7.27213 8.83364 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014925 B = 0.002637 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.606687 B =10613.744594 C =11622.498180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.008 3.992 3 Si 0.954 3.046 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.239 1.239 7 C -0.553 4.553 8 H 0.026 0.974 9 C 0.160 3.840 10 N -0.520 5.520 11 C 0.050 3.950 12 C 0.128 3.872 13 N -0.611 5.611 14 C 0.596 3.404 15 O -0.562 6.562 16 C -0.320 4.320 17 C 0.134 3.866 18 N -0.481 5.481 19 C 0.123 3.877 20 C -0.014 4.014 21 C -0.123 4.123 22 C -0.228 4.228 23 C 0.011 3.989 24 O -0.179 6.179 25 S 0.233 5.767 26 C 0.115 3.885 27 C 0.052 3.948 28 H 0.266 0.734 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.005 0.995 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.197 0.803 36 H 0.162 0.838 37 H 0.186 0.814 38 H 0.257 0.743 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.010 0.990 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.378 -18.728 -13.316 27.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.777 3.223 4 H -0.189 1.189 5 H -0.215 1.215 6 H -0.162 1.162 7 C -0.592 4.592 8 H 0.044 0.956 9 C 0.032 3.968 10 N -0.243 5.243 11 C -0.079 4.079 12 C 0.006 3.994 13 N -0.343 5.343 14 C 0.384 3.616 15 O -0.443 6.443 16 C -0.444 4.444 17 C -0.027 4.027 18 N -0.196 5.196 19 C -0.144 4.144 20 C -0.067 4.067 21 C -0.148 4.148 22 C -0.246 4.246 23 C -0.058 4.058 24 O -0.075 6.075 25 S 0.496 5.504 26 C -0.010 4.010 27 C -0.078 4.078 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.024 0.976 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.123 0.877 35 H 0.214 0.786 36 H 0.180 0.820 37 H 0.203 0.797 38 H 0.273 0.727 39 H 0.132 0.868 40 H 0.103 0.897 41 H 0.028 0.972 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 16.084 -18.126 -13.227 27.608 hybrid contribution -2.292 0.319 0.929 2.494 sum 13.792 -17.807 -12.299 25.662 Atomic orbital electron populations 1.70106 1.08665 1.28258 1.52106 1.26009 0.95509 1.03787 0.93686 0.85609 0.79574 0.77732 0.79383 1.18892 1.21533 1.16200 1.21907 0.93022 0.92893 1.51364 0.95582 1.20121 0.91442 0.87302 0.97893 1.62464 1.57500 1.02833 1.01491 1.22285 0.96677 0.95125 0.93829 1.21850 1.01516 0.89571 0.86419 1.48078 1.63716 1.13465 1.09086 1.16916 0.77028 0.81194 0.86432 1.90799 1.47152 1.75340 1.31038 1.25817 1.14949 1.03226 1.00404 1.22378 0.96140 0.89777 0.94375 1.66470 1.18265 1.34216 1.00661 1.25102 0.98794 0.95825 0.94702 1.18609 1.05220 0.95136 0.87724 1.22298 1.00498 0.95981 0.95996 1.22252 1.03816 1.01724 0.96858 1.25377 1.00632 0.90193 0.89637 1.84061 1.57566 1.44841 1.21027 1.85065 1.48450 1.14178 1.02724 1.22392 1.02947 0.92671 0.82952 1.22343 0.96507 0.93228 0.95683 0.92548 0.94273 0.94166 0.97632 0.89082 0.89326 0.87742 0.78626 0.82028 0.79708 0.72730 0.86825 0.89714 0.97198 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 2 C 0.01 0.45 5.47 84.65 0.46 0.91 16 3 Si 0.95 42.44 27.53 68.60 1.89 44.33 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.24 -9.62 6.45 99.48 0.64 -8.98 16 7 C -0.55 -30.66 8.31 25.60 0.21 -30.45 16 8 H 0.03 1.66 6.11 -2.91 -0.02 1.64 16 9 C 0.16 7.07 4.19 85.56 0.36 7.43 16 10 N -0.52 -19.67 4.83 -898.90 -4.34 -24.01 16 11 C 0.05 1.87 5.21 86.38 0.45 2.32 16 12 C 0.13 3.91 6.62 86.35 0.57 4.48 16 13 N -0.61 -19.06 3.00 -822.02 -2.47 -21.53 16 14 C 0.60 19.80 7.59 86.37 0.66 20.45 16 15 O -0.56 -21.92 16.40 -4.43 -0.07 -21.99 16 16 C -0.32 -8.99 6.20 24.07 0.15 -8.85 16 17 C 0.13 3.59 11.05 84.58 0.93 4.52 16 18 N -0.48 -12.53 10.47 -188.72 -1.98 -14.50 16 19 C 0.12 2.94 7.44 87.09 0.65 3.59 16 20 C -0.01 -0.29 7.21 24.11 0.17 -0.12 16 21 C -0.12 -2.05 10.79 22.42 0.24 -1.81 16 22 C -0.23 -2.34 10.88 22.09 0.24 -2.10 16 23 C 0.01 0.10 12.08 67.06 0.81 0.91 16 24 O -0.18 -3.01 10.67 -6.35 -0.07 -3.08 16 25 S 0.23 5.21 18.89 -56.49 -1.07 4.14 16 26 C 0.11 3.13 5.49 86.50 0.47 3.60 16 27 C 0.05 1.83 5.20 86.54 0.45 2.28 16 28 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 29 H 0.04 1.71 6.94 -2.39 -0.02 1.69 16 30 H 0.04 1.70 7.71 -2.39 -0.02 1.68 16 31 H 0.01 0.25 6.96 -2.39 -0.02 0.23 16 32 H 0.09 3.18 8.08 -2.39 -0.02 3.16 16 33 H 0.09 2.80 7.07 -2.39 -0.02 2.78 16 34 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.20 4.85 8.06 -2.91 -0.02 4.82 16 36 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 37 H 0.19 0.78 8.06 -2.91 -0.02 0.76 16 38 H 0.26 -0.29 8.06 -2.91 -0.02 -0.31 16 39 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.09 2.16 3.73 -21.99 -0.08 2.08 16 41 H 0.01 0.43 6.74 -2.39 -0.02 0.41 16 42 H 0.10 3.15 8.10 -2.39 -0.02 3.13 16 Total: -1.00 -75.77 358.42 -0.04 -75.81 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.93 Total: 12.66 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 6.83 Total: 7.18 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -8.48 Total: -119.06 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.14 Total: -25.07 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.89 Total: 44.33 kcal Atomic # 16 Polarization: 5.21 SS G_CDS: -1.07 Total: 4.14 kcal Total: -75.77 -0.04 -75.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602208179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.379 kcal (2) G-P(sol) polarization free energy of solvation -75.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds