Wall clock time and date at job start Wed Apr 1 2020 04:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34165 * 122.24891 * 2 1 4 4 C 1.46639 * 124.74461 * 359.97438 * 3 2 1 5 5 O 1.21706 * 119.99654 * 359.72323 * 4 3 2 6 6 N 1.34768 * 120.00139 * 179.72203 * 4 3 2 7 7 C 1.46500 * 120.00056 * 179.97438 * 6 4 3 8 8 H 1.08998 * 109.46845 * 35.00845 * 7 6 4 9 9 C 1.52997 * 109.47473 * 275.00296 * 7 6 4 10 10 C 1.50706 * 109.47187 * 154.99900 * 7 6 4 11 11 H 1.07998 * 119.99629 * 0.02562 * 10 7 6 12 12 C 1.37875 * 119.99955 * 179.97438 * 10 7 6 13 13 N 1.31510 * 120.00308 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99908 * 180.02562 * 12 10 7 15 15 H 1.48507 * 109.46754 * 90.00468 * 14 12 10 16 16 H 1.48498 * 109.47278 * 210.00299 * 14 12 10 17 17 H 1.48498 * 109.47109 * 330.00728 * 14 12 10 18 18 S 1.75539 * 110.51392 * 179.73519 * 3 2 1 19 19 C 1.75955 * 91.56856 * 0.23459 * 18 3 2 20 20 N 1.34439 * 131.22653 * 180.02562 * 19 18 3 21 21 C 1.30651 * 123.09820 * 180.02562 * 20 19 18 22 22 N 1.35721 * 121.81513 * 0.18579 * 21 20 19 23 23 C 1.35370 * 120.23674 * 359.71812 * 22 21 20 24 24 O 1.21822 * 120.69439 * 180.16171 * 23 22 21 25 25 C 1.39413 * 122.24507 * 180.23065 * 2 1 3 26 26 C 1.47306 * 110.98457 * 179.65452 * 22 21 20 27 27 C 1.54260 * 105.59038 * 17.55864 * 26 22 21 28 28 C 1.51959 * 128.57510 * 180.28879 * 21 20 19 29 29 H 1.08992 * 109.47342 * 90.02340 * 1 2 3 30 30 H 1.09003 * 109.46955 * 210.02839 * 1 2 3 31 31 H 1.09000 * 109.47227 * 330.02361 * 1 2 3 32 32 H 0.97001 * 120.00396 * 359.97438 * 6 4 3 33 33 H 1.09002 * 109.47153 * 59.99757 * 9 7 6 34 34 H 1.09001 * 109.46832 * 299.99948 * 9 7 6 35 35 H 1.09004 * 109.47261 * 179.97438 * 9 7 6 36 36 H 0.96998 * 120.00365 * 179.97438 * 13 12 10 37 37 H 1.09000 * 110.22528 * 136.58424 * 26 22 21 38 38 H 1.08997 * 110.22612 * 258.53347 * 26 22 21 39 39 H 1.09004 * 110.96433 * 91.79676 * 27 26 22 40 40 H 1.09003 * 110.96678 * 215.54199 * 27 26 22 41 41 H 1.08996 * 110.45442 * 281.86796 * 28 21 20 42 42 H 1.08997 * 110.45807 * 44.42798 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2229 1.1347 0.0000 4 6 1.6498 2.4844 -0.0005 5 8 0.4418 2.6326 -0.0061 6 7 2.4607 3.5609 0.0052 7 6 1.8881 4.9093 0.0041 8 1 0.9683 4.9139 0.5889 9 6 1.5804 5.3317 -1.4339 10 6 2.8739 5.8742 0.6110 11 1 3.8313 5.5185 0.9621 12 6 2.5539 7.2111 0.7172 13 7 1.3883 7.6443 0.2893 14 14 3.7761 8.4072 1.4689 15 1 4.6510 8.9566 0.4021 16 1 3.0415 9.5172 2.1273 17 1 4.6075 7.6985 2.4748 18 16 3.9416 0.7777 0.0076 19 6 3.6311 -0.9543 0.0035 20 7 4.4699 -2.0048 0.0063 21 6 4.0598 -3.2453 0.0018 22 7 2.7403 -3.5626 -0.0098 23 6 1.8040 -2.5849 -0.0114 24 8 0.6174 -2.8602 -0.0188 25 6 2.2508 -1.1791 -0.0047 26 6 2.5490 -5.0231 -0.0208 27 6 3.8965 -5.6212 0.4333 28 6 4.8903 -4.5178 0.0102 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3634 0.8902 0.5135 32 1 3.4235 3.4428 0.0100 33 1 0.8674 4.6338 -1.8729 34 1 2.5003 5.3271 -2.0186 35 1 1.1540 6.3348 -1.4347 36 1 1.1630 8.5847 0.3643 37 1 1.7584 -5.3049 0.6747 38 1 2.3057 -5.3638 -1.0271 39 1 3.9138 -5.7683 1.5132 40 1 4.1048 -6.5548 -0.0893 41 1 5.2847 -4.7219 -0.9852 42 1 5.7018 -4.4384 0.7335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604510478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:44 Heat of formation + Delta-G solvation = -14.559822 kcal Electronic energy + Delta-G solvation = -27457.247411 eV Core-core repulsion = 23528.855952 eV Total energy + Delta-G solvation = -3928.391459 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.11271 -39.36528 -38.32137 -37.65037 -35.48137 -34.64124 -32.70451 -32.45765 -30.17079 -29.43194 -28.21953 -27.57193 -25.26910 -24.54916 -23.84655 -22.16442 -22.01736 -20.05379 -19.60455 -18.87289 -17.89136 -17.40055 -16.87084 -16.64139 -16.03015 -15.37180 -15.24322 -15.16844 -14.53604 -14.39733 -14.27290 -14.06581 -13.95863 -13.42029 -13.21350 -13.11894 -12.95921 -12.85238 -12.43183 -12.20781 -12.15406 -12.07929 -11.72964 -11.18285 -11.09738 -11.02897 -10.94818 -10.74622 -10.43318 -10.32188 -10.23866 -10.12390 -10.06801 -9.11170 -9.06450 -8.72302 -8.57506 -8.11865 -7.87661 -6.13094 -4.22614 -0.12810 0.93571 1.41360 1.72226 1.75268 2.02950 3.13815 3.19406 3.24855 3.31636 3.34016 3.63898 3.74965 3.86997 3.97707 4.15737 4.33859 4.41573 4.65254 4.68843 4.81045 4.92958 5.03539 5.12225 5.19225 5.25039 5.28054 5.42244 5.68916 5.76932 5.86530 6.04970 6.14663 6.49895 6.67986 6.82438 6.95764 7.12552 7.37396 7.38569 7.48896 7.51673 7.66877 7.88785 8.12511 8.55996 8.73575 8.99168 9.44445 10.92916 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.023357 B = 0.002535 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.491013 B =11043.147004 C =11956.113188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.029 3.971 3 C -0.256 4.256 4 C 0.578 3.422 5 O -0.531 6.531 6 N -0.701 5.701 7 C 0.265 3.735 8 H 0.053 0.947 9 C -0.148 4.148 10 C -0.535 4.535 11 H 0.062 0.938 12 C 0.067 3.933 13 N -0.882 5.882 14 Si 0.902 3.098 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.273 1.273 18 S 0.246 5.754 19 C 0.080 3.920 20 N -0.504 5.504 21 C 0.396 3.604 22 N -0.547 5.547 23 C 0.570 3.430 24 O -0.509 6.509 25 C -0.230 4.230 26 C 0.093 3.907 27 C -0.131 4.131 28 C -0.071 4.071 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.385 0.615 33 H 0.016 0.984 34 H 0.027 0.973 35 H 0.092 0.908 36 H 0.265 0.735 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.115 0.885 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.979 -27.859 -1.137 29.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.017 3.983 3 C -0.377 4.377 4 C 0.362 3.638 5 O -0.410 6.410 6 N -0.348 5.348 7 C 0.164 3.836 8 H 0.071 0.929 9 C -0.207 4.207 10 C -0.574 4.574 11 H 0.080 0.920 12 C -0.136 4.136 13 N -0.520 5.520 14 Si 0.730 3.270 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 S 0.515 5.485 19 C -0.153 4.153 20 N -0.226 5.226 21 C 0.125 3.875 22 N -0.271 5.271 23 C 0.364 3.636 24 O -0.383 6.383 25 C -0.248 4.248 26 C -0.028 4.028 27 C -0.169 4.169 28 C -0.110 4.110 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.120 0.880 32 H 0.218 0.782 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.125 0.875 41 H 0.133 0.867 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.172 -26.287 -1.146 27.865 hybrid contribution -0.784 -0.330 0.290 0.899 sum 8.388 -26.617 -0.856 27.920 Atomic orbital electron populations 1.20952 0.87935 1.04669 1.03482 1.18383 0.98440 0.88224 0.93257 1.23994 0.96322 0.98722 1.18633 1.16818 0.86829 0.82164 0.77991 1.90736 1.13547 1.85283 1.51484 1.46492 1.08739 1.07696 1.71896 1.18832 0.95352 0.75143 0.94254 0.92941 1.22094 0.98459 1.02957 0.97158 1.21195 1.02180 0.92619 1.41368 0.92009 1.24877 0.95516 0.98107 0.95134 1.69896 1.20737 1.15644 1.45694 0.86432 0.80818 0.80475 0.79303 1.20502 1.21042 1.19798 1.84111 1.03240 0.91179 1.70011 1.23973 0.91492 0.99132 1.00698 1.66662 1.36225 0.95455 1.24273 1.24004 0.83021 0.92956 0.87478 1.47371 1.07937 1.09324 1.62421 1.17794 0.85019 0.83772 0.76991 1.90870 1.15170 1.83106 1.49187 1.20278 0.93106 0.93273 1.18151 1.22519 0.99964 0.76157 1.04170 1.22702 0.92076 0.98567 1.03577 1.21405 0.97645 0.86282 1.05716 0.90661 0.90898 0.87990 0.78223 0.96464 0.95367 0.88940 0.92515 0.88400 0.88931 0.89026 0.87466 0.86722 0.86711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.97 9.00 36.01 0.32 -1.64 16 2 C 0.03 0.52 5.84 -105.62 -0.62 -0.10 16 3 C -0.26 -4.60 6.32 -37.63 -0.24 -4.84 16 4 C 0.58 12.36 7.73 -12.87 -0.10 12.26 16 5 O -0.53 -12.83 13.58 5.18 0.07 -12.76 16 6 N -0.70 -15.27 5.06 -56.25 -0.28 -15.56 16 7 C 0.27 6.83 2.56 -69.08 -0.18 6.65 16 8 H 0.05 1.54 7.58 -51.93 -0.39 1.14 16 9 C -0.15 -3.72 9.26 37.16 0.34 -3.37 16 10 C -0.54 -14.26 8.73 -34.44 -0.30 -14.56 16 11 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 12 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 13 N -0.88 -24.84 11.32 55.43 0.63 -24.22 16 14 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 S 0.25 3.56 22.26 -107.50 -2.39 1.17 16 19 C 0.08 1.17 7.74 -15.81 -0.12 1.05 16 20 N -0.50 -6.22 10.33 -8.21 -0.08 -6.30 16 21 C 0.40 3.63 7.97 -154.05 -1.23 2.40 16 22 N -0.55 -5.61 3.09 -112.01 -0.35 -5.96 16 23 C 0.57 8.38 7.85 -12.22 -0.10 8.29 16 24 O -0.51 -8.55 15.63 5.08 0.08 -8.47 16 25 C -0.23 -3.66 6.03 -105.08 -0.63 -4.30 16 26 C 0.09 0.50 7.23 -2.94 -0.02 0.48 16 27 C -0.13 -0.22 7.15 -25.34 -0.18 -0.40 16 28 C -0.07 -0.23 6.85 -26.53 -0.18 -0.42 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.07 1.23 6.53 -51.93 -0.34 0.89 16 31 H 0.10 1.96 5.75 -51.93 -0.30 1.66 16 32 H 0.39 7.42 7.58 -40.82 -0.31 7.11 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 40 H 0.11 -0.10 8.14 -51.93 -0.42 -0.52 16 41 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 360.54 15.07 5.43 5.43 Total: -1.00 -34.54 360.54 -10.24 -44.78 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.00 Total: 3.00 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -3.32 Total: 3.22 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -0.09 Total: -52.03 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: 0.15 Total: -21.23 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -2.39 Total: 1.17 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.54 -10.24 -44.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604510478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.224 kcal (2) G-P(sol) polarization free energy of solvation -34.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds