Wall clock time and date at job start Wed Apr 1 2020 04:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34165 * 122.24891 * 2 1 4 4 C 1.46639 * 124.74461 * 359.97438 * 3 2 1 5 5 O 1.21706 * 119.99654 * 359.72323 * 4 3 2 6 6 N 1.34768 * 120.00139 * 179.72203 * 4 3 2 7 7 C 1.46500 * 120.00056 * 179.97438 * 6 4 3 8 8 H 1.08998 * 109.46845 * 35.00845 * 7 6 4 9 9 C 1.52997 * 109.47473 * 275.00296 * 7 6 4 10 10 C 1.50706 * 109.47187 * 154.99900 * 7 6 4 11 11 H 1.07998 * 119.99629 * 0.02562 * 10 7 6 12 12 C 1.37875 * 119.99955 * 179.97438 * 10 7 6 13 13 N 1.31510 * 120.00308 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99908 * 180.02562 * 12 10 7 15 15 H 1.48507 * 109.46754 * 90.00468 * 14 12 10 16 16 H 1.48498 * 109.47278 * 210.00299 * 14 12 10 17 17 H 1.48498 * 109.47109 * 330.00728 * 14 12 10 18 18 S 1.75539 * 110.51392 * 179.73519 * 3 2 1 19 19 C 1.75955 * 91.56856 * 0.23459 * 18 3 2 20 20 N 1.34439 * 131.22653 * 180.02562 * 19 18 3 21 21 C 1.30651 * 123.09820 * 180.02562 * 20 19 18 22 22 N 1.35721 * 121.81513 * 0.18579 * 21 20 19 23 23 C 1.35370 * 120.23674 * 359.71812 * 22 21 20 24 24 O 1.21822 * 120.69439 * 180.16171 * 23 22 21 25 25 C 1.39413 * 122.24507 * 180.23065 * 2 1 3 26 26 C 1.47306 * 110.98457 * 179.65452 * 22 21 20 27 27 C 1.54260 * 105.59038 * 17.55864 * 26 22 21 28 28 C 1.51959 * 128.57510 * 180.28879 * 21 20 19 29 29 H 1.08992 * 109.47342 * 90.02340 * 1 2 3 30 30 H 1.09003 * 109.46955 * 210.02839 * 1 2 3 31 31 H 1.09000 * 109.47227 * 330.02361 * 1 2 3 32 32 H 0.97001 * 120.00396 * 359.97438 * 6 4 3 33 33 H 1.09002 * 109.47153 * 59.99757 * 9 7 6 34 34 H 1.09001 * 109.46832 * 299.99948 * 9 7 6 35 35 H 1.09004 * 109.47261 * 179.97438 * 9 7 6 36 36 H 0.96998 * 120.00365 * 179.97438 * 13 12 10 37 37 H 1.09000 * 110.22528 * 136.58424 * 26 22 21 38 38 H 1.08997 * 110.22612 * 258.53347 * 26 22 21 39 39 H 1.09004 * 110.96433 * 91.79676 * 27 26 22 40 40 H 1.09003 * 110.96678 * 215.54199 * 27 26 22 41 41 H 1.08996 * 110.45442 * 281.86796 * 28 21 20 42 42 H 1.08997 * 110.45807 * 44.42798 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2229 1.1347 0.0000 4 6 1.6498 2.4844 -0.0005 5 8 0.4418 2.6326 -0.0061 6 7 2.4607 3.5609 0.0052 7 6 1.8881 4.9093 0.0041 8 1 0.9683 4.9139 0.5889 9 6 1.5804 5.3317 -1.4339 10 6 2.8739 5.8742 0.6110 11 1 3.8313 5.5185 0.9621 12 6 2.5539 7.2111 0.7172 13 7 1.3883 7.6443 0.2893 14 14 3.7761 8.4072 1.4689 15 1 4.6510 8.9566 0.4021 16 1 3.0415 9.5172 2.1273 17 1 4.6075 7.6985 2.4748 18 16 3.9416 0.7777 0.0076 19 6 3.6311 -0.9543 0.0035 20 7 4.4699 -2.0048 0.0063 21 6 4.0598 -3.2453 0.0018 22 7 2.7403 -3.5626 -0.0098 23 6 1.8040 -2.5849 -0.0114 24 8 0.6174 -2.8602 -0.0188 25 6 2.2508 -1.1791 -0.0047 26 6 2.5490 -5.0231 -0.0208 27 6 3.8965 -5.6212 0.4333 28 6 4.8903 -4.5178 0.0102 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3634 0.8902 0.5135 32 1 3.4235 3.4428 0.0100 33 1 0.8674 4.6338 -1.8729 34 1 2.5003 5.3271 -2.0186 35 1 1.1540 6.3348 -1.4347 36 1 1.1630 8.5847 0.3643 37 1 1.7584 -5.3049 0.6747 38 1 2.3057 -5.3638 -1.0271 39 1 3.9138 -5.7683 1.5132 40 1 4.1048 -6.5548 -0.0893 41 1 5.2847 -4.7219 -0.9852 42 1 5.7018 -4.4384 0.7335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604510478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:44 Heat of formation + Delta-G solvation = -37.810288 kcal Electronic energy + Delta-G solvation = -27458.255627 eV Core-core repulsion = 23528.855952 eV Total energy + Delta-G solvation = -3929.399675 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.01529 -40.93807 -39.38882 -38.82166 -36.92974 -36.11355 -34.42899 -33.39576 -31.51873 -30.99078 -29.07190 -28.92443 -27.36028 -25.60006 -24.80029 -23.55584 -22.64050 -21.79988 -21.00040 -20.15813 -19.00043 -18.44825 -18.07080 -17.99171 -17.19792 -17.02594 -16.75337 -16.29325 -15.99937 -15.76113 -15.30011 -14.95910 -14.94212 -14.80117 -14.50134 -14.34264 -14.24982 -13.87890 -13.73308 -13.60891 -13.44121 -12.98602 -12.97124 -12.87668 -12.72469 -12.48663 -12.31776 -12.27270 -12.14129 -11.78405 -11.57880 -11.16457 -11.12911 -10.99359 -10.82229 -10.61763 -9.98143 -9.83480 -9.13680 -8.18879 -6.36849 -1.20164 -0.19989 0.19443 0.47689 0.65529 1.17420 1.45220 1.46226 1.56943 2.00956 2.22102 2.24615 2.47856 2.50227 3.02663 3.11644 3.33354 3.51507 3.66825 3.79180 3.96626 4.06956 4.26584 4.32399 4.50948 4.55563 4.55955 4.61245 4.71981 4.81470 4.88967 4.98110 5.04819 5.05563 5.08749 5.17851 5.19009 5.30115 5.41514 5.53631 5.63101 5.84055 6.05256 6.42693 6.45151 6.67010 6.77187 7.21928 7.38587 8.87654 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.023357 B = 0.002535 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.491013 B =11043.147004 C =11956.113188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.033 3.967 3 C -0.295 4.295 4 C 0.578 3.422 5 O -0.570 6.570 6 N -0.699 5.699 7 C 0.272 3.728 8 H 0.005 0.995 9 C -0.135 4.135 10 C -0.550 4.550 11 H 0.073 0.927 12 C 0.016 3.984 13 N -0.916 5.916 14 Si 0.974 3.026 15 H -0.269 1.269 16 H -0.286 1.286 17 H -0.264 1.264 18 S 0.290 5.710 19 C 0.104 3.896 20 N -0.528 5.528 21 C 0.413 3.587 22 N -0.546 5.546 23 C 0.565 3.435 24 O -0.541 6.541 25 C -0.273 4.273 26 C 0.078 3.922 27 C -0.112 4.112 28 C -0.067 4.067 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.399 0.601 33 H 0.013 0.987 34 H 0.041 0.959 35 H 0.071 0.929 36 H 0.267 0.733 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.931 -31.280 -0.994 33.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.020 3.980 3 C -0.415 4.415 4 C 0.365 3.635 5 O -0.452 6.452 6 N -0.347 5.347 7 C 0.169 3.831 8 H 0.023 0.977 9 C -0.194 4.194 10 C -0.588 4.588 11 H 0.091 0.909 12 C -0.184 4.184 13 N -0.554 5.554 14 Si 0.799 3.201 15 H -0.195 1.195 16 H -0.211 1.211 17 H -0.188 1.188 18 S 0.557 5.443 19 C -0.131 4.131 20 N -0.252 5.252 21 C 0.145 3.855 22 N -0.267 5.267 23 C 0.359 3.641 24 O -0.418 6.418 25 C -0.290 4.290 26 C -0.041 4.041 27 C -0.150 4.150 28 C -0.106 4.106 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.234 0.766 33 H 0.032 0.968 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.165 0.835 41 H 0.163 0.837 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 13.161 -29.806 -1.004 32.598 hybrid contribution -1.970 0.417 0.236 2.027 sum 11.191 -29.389 -0.768 31.457 Atomic orbital electron populations 1.20797 0.88909 1.03514 1.03027 1.18469 0.98135 0.89147 0.92234 1.23470 0.99026 0.96633 1.22364 1.17201 0.86320 0.83314 0.76663 1.90707 1.15282 1.86252 1.53000 1.46202 1.09464 1.06565 1.72443 1.18463 0.93771 0.77139 0.93698 0.97661 1.21919 0.98760 1.01526 0.97160 1.21500 1.02602 0.93074 1.41593 0.90865 1.25802 0.97286 0.99944 0.95409 1.70044 1.22616 1.16080 1.46622 0.85310 0.78375 0.77810 0.78648 1.19464 1.21131 1.18808 1.83778 0.99527 0.91054 1.69955 1.24177 0.91233 1.00067 0.97660 1.66841 1.35532 0.96041 1.26816 1.25457 0.83496 0.93720 0.82806 1.47604 1.07685 1.10845 1.60524 1.17768 0.85266 0.84226 0.76831 1.90838 1.16553 1.83688 1.50730 1.20290 0.93711 0.93679 1.21317 1.23043 1.02612 0.73081 1.05409 1.22817 0.88410 0.99044 1.04686 1.21867 0.97588 0.82947 1.08191 0.90831 0.90654 0.90195 0.76628 0.96805 0.93986 0.91005 0.92422 0.88757 0.87397 0.88117 0.83548 0.83667 0.84361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.95 9.00 71.24 0.64 -3.31 16 2 C 0.03 1.24 5.84 -20.51 -0.12 1.12 16 3 C -0.30 -11.06 6.32 23.54 0.15 -10.91 16 4 C 0.58 26.22 7.73 86.44 0.67 26.89 16 5 O -0.57 -29.75 13.58 -4.37 -0.06 -29.81 16 6 N -0.70 -31.66 5.06 -450.11 -2.28 -33.94 16 7 C 0.27 14.64 2.56 44.25 0.11 14.76 16 8 H 0.01 0.34 7.58 -2.39 -0.02 0.33 16 9 C -0.13 -7.06 9.26 71.98 0.67 -6.39 16 10 C -0.55 -29.73 8.73 25.60 0.22 -29.51 16 11 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 12 C 0.02 0.87 5.30 84.65 0.45 1.31 16 13 N -0.92 -53.00 11.32 21.45 0.24 -52.76 16 14 Si 0.97 42.38 29.54 68.60 2.03 44.41 16 15 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 16 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 17 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 18 S 0.29 8.26 22.26 -56.49 -1.26 7.00 16 19 C 0.10 2.94 7.74 84.68 0.66 3.60 16 20 N -0.53 -11.68 10.33 -179.87 -1.86 -13.54 16 21 C 0.41 6.14 7.97 138.27 1.10 7.24 16 22 N -0.55 -9.92 3.09 -626.12 -1.94 -11.86 16 23 C 0.57 16.48 7.85 86.59 0.68 17.16 16 24 O -0.54 -18.56 15.63 -4.74 -0.07 -18.63 16 25 C -0.27 -8.80 6.03 -20.16 -0.12 -8.92 16 26 C 0.08 0.55 7.23 86.65 0.63 1.18 16 27 C -0.11 0.28 7.15 31.50 0.23 0.51 16 28 C -0.07 -0.05 6.85 30.73 0.21 0.16 16 29 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.07 2.75 6.53 -2.39 -0.02 2.73 16 31 H 0.08 3.38 5.75 -2.39 -0.01 3.37 16 32 H 0.40 15.61 7.58 -92.71 -0.70 14.90 16 33 H 0.01 0.67 8.14 -2.39 -0.02 0.66 16 34 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.07 4.06 6.07 -2.38 -0.01 4.04 16 36 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 37 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.10 -0.33 8.14 -2.38 -0.02 -0.35 16 40 H 0.15 -1.33 8.14 -2.39 -0.02 -1.35 16 41 H 0.15 -0.54 8.14 -2.39 -0.02 -0.56 16 42 H 0.14 -0.32 8.14 -2.39 -0.02 -0.34 16 Total: -1.00 -81.27 360.54 1.36 -79.91 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.39 Total: 14.35 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 6.17 Total: 14.88 kcal Atomic # 7 Polarization: -106.27 SS G_CDS: -5.83 Total: -112.10 kcal Atomic # 8 Polarization: -48.31 SS G_CDS: -0.13 Total: -48.44 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 8.26 SS G_CDS: -1.26 Total: 7.00 kcal Total: -81.27 1.36 -79.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604510478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.104 kcal (2) G-P(sol) polarization free energy of solvation -81.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds