Wall clock time and date at job start Wed Apr 1 2020 04:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 119.99899 * 2 1 4 4 H 1.48508 * 109.46924 * 239.99878 * 3 2 1 5 5 H 1.48497 * 109.47413 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47362 * 120.00103 * 3 2 1 7 7 C 1.38810 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99637 * 163.17915 * 7 2 1 9 9 N 1.36934 * 120.00385 * 343.17619 * 7 2 1 10 10 C 1.46923 * 120.63052 * 151.92570 * 9 7 2 11 11 C 1.53192 * 108.89264 * 126.47035 * 10 9 7 12 12 C 1.53041 * 109.31335 * 54.56274 * 11 10 9 13 13 N 1.46500 * 109.45675 * 178.61088 * 12 11 10 14 14 C 1.34779 * 119.99996 * 204.99381 * 13 12 11 15 15 O 1.21726 * 120.00081 * 0.02562 * 14 13 12 16 16 C 1.46420 * 119.99803 * 180.02562 * 14 13 12 17 17 C 1.36818 * 125.99631 * 179.71824 * 16 14 13 18 18 N 1.30354 * 115.30952 * 179.84177 * 17 16 14 19 19 C 1.30929 * 117.32366 * 0.46368 * 18 17 16 20 20 C 1.46855 * 125.29187 * 179.77505 * 19 18 17 21 21 C 1.36428 * 125.97546 * 359.96678 * 20 19 18 22 22 C 1.40614 * 106.71845 * 179.97438 * 21 20 19 23 23 C 1.34953 * 107.09023 * 359.97438 * 22 21 20 24 24 O 1.34161 * 108.74506 * 359.73590 * 23 22 21 25 25 S 1.76128 * 109.41659 * 359.74627 * 19 18 17 26 26 C 1.53034 * 109.53846 * 298.63620 * 12 11 10 27 27 C 1.46963 * 120.65445 * 331.75076 * 9 7 2 28 28 H 0.97000 * 119.99586 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.58814 * 6.60497 * 10 9 7 30 30 H 1.09002 * 109.58411 * 246.32718 * 10 9 7 31 31 H 1.09005 * 109.49585 * 174.51826 * 11 10 9 32 32 H 1.08997 * 109.49466 * 294.60443 * 11 10 9 33 33 H 1.08998 * 109.45744 * 58.65976 * 12 11 10 34 34 H 0.97004 * 120.00015 * 25.00918 * 13 12 11 35 35 H 1.07998 * 122.34286 * 0.04284 * 17 16 14 36 36 H 1.08001 * 126.64188 * 359.97250 * 21 20 19 37 37 H 1.08000 * 126.45481 * 180.02562 * 22 21 20 38 38 H 1.07997 * 125.62628 * 180.02562 * 23 22 21 39 39 H 1.09000 * 109.49720 * 181.31749 * 26 12 11 40 40 H 1.09010 * 109.49370 * 301.38037 * 26 12 11 41 41 H 1.08993 * 109.46933 * 113.74085 * 27 9 7 42 42 H 1.09000 * 109.71279 * 353.45490 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0556 -1.2223 -0.2701 9 7 1.3695 -2.3625 0.3443 10 6 1.8155 -3.6530 -0.1985 11 6 2.0654 -4.6199 0.9631 12 6 0.8078 -4.7041 1.8311 13 7 1.0319 -5.6534 2.9242 14 6 -0.0149 -6.2757 3.5016 15 8 -1.1466 -6.0494 3.1145 16 6 0.2092 -7.2240 4.5945 17 6 -0.7587 -7.9171 5.2689 18 7 -0.3242 -8.7115 6.2066 19 6 0.9690 -8.7542 6.4067 20 6 1.6446 -9.5804 7.4154 21 6 1.0368 -10.4264 8.2964 22 6 2.0578 -11.0077 9.0690 23 6 3.2272 -10.4971 8.6296 24 8 2.9746 -9.6411 7.6280 25 16 1.7724 -7.6673 5.2774 26 6 0.4928 -3.3235 2.4112 27 6 0.2251 -2.3418 1.2660 28 1 -0.4849 0.8401 -0.0004 29 1 2.7377 -3.5131 -0.7625 30 1 1.0449 -4.0598 -0.8533 31 1 2.3025 -5.6082 0.5692 32 1 2.8992 -4.2580 1.5647 33 1 -0.0311 -5.0425 1.2230 34 1 1.9338 -5.8338 3.2326 35 1 -1.8089 -7.8156 5.0382 36 1 -0.0233 -10.6134 8.3836 37 1 1.9302 -11.7279 9.8637 38 1 4.2053 -10.7412 9.0170 39 1 -0.3894 -3.3890 3.0480 40 1 1.3413 -2.9740 2.9998 41 1 -0.6769 -2.6405 0.7320 42 1 0.0955 -1.3373 1.6687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609329412.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:03 Heat of formation + Delta-G solvation = 30.269655 kcal Electronic energy + Delta-G solvation = -26610.573376 eV Core-core repulsion = 22684.125869 eV Total energy + Delta-G solvation = -3926.447507 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.61727 -41.35856 -40.36543 -38.91199 -36.11386 -34.23687 -34.04129 -32.87815 -31.84186 -31.37870 -30.00856 -27.29477 -26.56399 -24.32739 -23.94774 -23.19243 -22.53513 -22.23980 -21.30023 -20.48903 -19.91199 -18.78534 -18.31537 -17.73460 -17.31271 -17.18642 -16.80469 -16.36915 -16.19365 -15.68052 -15.44802 -15.36777 -15.22438 -15.09354 -14.76563 -14.31772 -14.12039 -14.00003 -13.90181 -13.52977 -13.23064 -13.03546 -12.77401 -12.69206 -12.57452 -12.16649 -12.11255 -11.89364 -11.59913 -11.55090 -11.32847 -11.27466 -11.00845 -10.87168 -10.58730 -10.54363 -10.16947 -9.14032 -8.71992 -7.87888 -5.34193 -1.33537 -0.16945 0.27044 0.50162 1.33842 1.45857 1.47518 1.50089 1.56869 1.71223 1.91792 2.02365 2.51411 3.20166 3.28111 3.57684 3.63638 3.68850 3.84305 3.96745 3.99889 4.02707 4.15377 4.27545 4.43747 4.60171 4.63424 4.72357 4.81483 4.87325 4.94490 4.97807 4.99106 5.02804 5.09992 5.28902 5.37109 5.43896 5.44240 5.63331 5.68538 5.89531 6.24606 6.36314 6.38183 6.96659 7.12821 7.83557 8.36393 9.19214 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.023574 B = 0.002005 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.484400 B =13963.171742 C =14428.312515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.055 4.055 3 Si 0.970 3.030 4 H -0.273 1.273 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.262 4.262 8 H 0.074 0.926 9 N -0.609 5.609 10 C 0.142 3.858 11 C -0.124 4.124 12 C 0.162 3.838 13 N -0.705 5.705 14 C 0.595 3.405 15 O -0.562 6.562 16 C -0.306 4.306 17 C 0.129 3.871 18 N -0.475 5.475 19 C 0.150 3.850 20 C -0.016 4.016 21 C -0.119 4.119 22 C -0.227 4.227 23 C 0.012 3.988 24 O -0.180 6.180 25 S 0.205 5.795 26 C -0.132 4.132 27 C 0.183 3.817 28 H 0.249 0.751 29 H 0.069 0.931 30 H 0.014 0.986 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.408 0.592 35 H 0.198 0.802 36 H 0.164 0.836 37 H 0.186 0.814 38 H 0.257 0.743 39 H 0.048 0.952 40 H 0.061 0.939 41 H -0.008 1.008 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.232 -25.122 19.304 33.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.250 4.250 3 Si 0.798 3.202 4 H -0.198 1.198 5 H -0.224 1.224 6 H -0.203 1.203 7 C -0.392 4.392 8 H 0.091 0.909 9 N -0.333 5.333 10 C 0.016 3.984 11 C -0.163 4.163 12 C 0.058 3.942 13 N -0.355 5.355 14 C 0.381 3.619 15 O -0.443 6.443 16 C -0.431 4.431 17 C -0.031 4.031 18 N -0.191 5.191 19 C -0.119 4.119 20 C -0.069 4.069 21 C -0.144 4.144 22 C -0.246 4.246 23 C -0.057 4.057 24 O -0.075 6.075 25 S 0.466 5.534 26 C -0.172 4.172 27 C 0.056 3.944 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.032 0.968 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.244 0.756 35 H 0.215 0.785 36 H 0.181 0.819 37 H 0.203 0.797 38 H 0.272 0.728 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.010 0.990 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.342 -24.615 18.861 32.387 hybrid contribution -0.931 1.194 -0.246 1.534 sum 8.411 -23.421 18.615 31.077 Atomic orbital electron populations 1.70200 1.06855 1.25938 1.55366 1.25885 0.96026 1.01806 1.01268 0.85308 0.77478 0.79007 0.78453 1.19837 1.22416 1.20282 1.19517 0.92977 0.85761 1.40933 0.90868 1.44330 1.35632 1.02670 1.50629 1.21028 0.98076 0.85489 0.93774 1.22175 0.95974 1.00665 0.97513 1.20798 0.99182 0.87298 0.86958 1.45977 1.09160 1.43609 1.36774 1.16881 0.84888 0.79350 0.80821 1.90857 1.23652 1.65468 1.64305 1.25812 0.98153 1.10964 1.08157 1.22414 1.01971 0.89743 0.88930 1.66406 1.11313 1.21866 1.19471 1.24556 0.91239 0.98366 0.97747 1.18559 0.81839 1.04889 1.01588 1.22297 1.02203 0.95435 0.94487 1.22259 0.91252 1.06075 1.05027 1.25374 1.02730 0.90198 0.87436 1.84062 1.22820 1.53979 1.46680 1.84732 1.05781 1.35854 1.27032 1.22333 1.00512 0.95634 0.98768 1.20467 0.87972 0.97245 0.88703 0.94169 0.91238 0.96783 0.88888 0.90598 0.91545 0.75565 0.78530 0.81884 0.79714 0.72765 0.93345 0.91994 0.98975 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.66 11.20 21.65 0.24 -56.42 16 2 C -0.05 -3.07 4.92 84.86 0.42 -2.66 16 3 Si 0.97 44.94 29.59 68.60 2.03 46.97 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.26 -14.26 9.58 84.03 0.81 -13.45 16 8 H 0.07 3.80 7.88 -2.91 -0.02 3.77 16 9 N -0.61 -30.53 3.00 -699.03 -2.10 -32.62 16 10 C 0.14 5.66 6.51 86.36 0.56 6.22 16 11 C -0.12 -3.79 5.55 30.67 0.17 -3.62 16 12 C 0.16 5.51 2.42 45.02 0.11 5.62 16 13 N -0.70 -19.61 5.07 -446.62 -2.27 -21.87 16 14 C 0.59 18.20 7.74 86.37 0.67 18.87 16 15 O -0.56 -21.71 16.52 -4.43 -0.07 -21.78 16 16 C -0.31 -7.59 6.50 24.07 0.16 -7.43 16 17 C 0.13 3.10 11.04 84.58 0.93 4.04 16 18 N -0.48 -10.93 10.47 -188.73 -1.98 -12.91 16 19 C 0.15 3.10 7.44 87.08 0.65 3.75 16 20 C -0.02 -0.28 7.21 24.10 0.17 -0.11 16 21 C -0.12 -1.67 10.79 22.43 0.24 -1.43 16 22 C -0.23 -1.79 10.88 22.09 0.24 -1.55 16 23 C 0.01 0.08 12.08 67.06 0.81 0.89 16 24 O -0.18 -2.54 10.67 -6.30 -0.07 -2.61 16 25 S 0.21 3.87 22.52 -56.49 -1.27 2.60 16 26 C -0.13 -5.34 5.65 30.67 0.17 -5.16 16 27 C 0.18 9.22 5.30 86.35 0.46 9.67 16 28 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 29 H 0.07 2.61 7.93 -2.39 -0.02 2.59 16 30 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 32 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.07 2.58 7.58 -2.39 -0.02 2.56 16 34 H 0.41 8.84 7.77 -92.71 -0.72 8.12 16 35 H 0.20 4.40 8.05 -2.91 -0.02 4.38 16 36 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.19 0.38 8.06 -2.91 -0.02 0.36 16 38 H 0.26 -0.85 8.06 -2.91 -0.02 -0.87 16 39 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 41 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 42 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 Total: -1.00 -73.83 370.60 1.43 -72.40 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.35 Total: 12.59 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 6.57 Total: 13.66 kcal Atomic # 7 Polarization: -117.73 SS G_CDS: -6.10 Total: -123.83 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.14 Total: -24.39 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -1.27 Total: 2.60 kcal Total: -73.83 1.43 -72.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609329412.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.668 kcal (2) G-P(sol) polarization free energy of solvation -73.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds