Wall clock time and date at job start Wed Apr 1 2020 03:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86793 * 120.00192 * 2 1 4 4 H 1.48505 * 109.47227 * 185.00832 * 3 2 1 5 5 H 1.48498 * 109.47232 * 305.00609 * 3 2 1 6 6 H 1.48502 * 109.47519 * 65.00820 * 3 2 1 7 7 C 1.39946 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00620 * 168.59684 * 7 2 1 9 9 C 1.41400 * 119.99575 * 348.60196 * 7 2 1 10 10 C 1.40732 * 120.24743 * 328.41604 * 9 7 2 11 11 C 1.37600 * 119.74554 * 180.28037 * 10 9 7 12 12 C 1.38658 * 120.24731 * 359.69364 * 11 10 9 13 13 C 1.38613 * 120.50033 * 0.03207 * 12 11 10 14 14 C 1.37629 * 120.25022 * 359.96857 * 13 12 11 15 15 S 1.76203 * 120.12844 * 180.02562 * 14 13 12 16 16 O 1.42098 * 106.40279 * 132.47757 * 15 14 13 17 17 O 1.42095 * 106.40124 * 359.55691 * 15 14 13 18 18 N 1.65605 * 107.21940 * 246.01650 * 15 14 13 19 19 C 1.40802 * 119.99812 * 62.62399 * 18 15 14 20 20 C 1.40223 * 126.06911 * 45.13843 * 19 18 15 21 21 N 1.30851 * 108.36510 * 179.97438 * 20 19 18 22 22 N 1.40075 * 108.36294 * 359.97438 * 21 20 19 23 23 C 1.46502 * 126.07407 * 179.97438 * 22 21 20 24 24 C 1.52995 * 109.47511 * 305.61715 * 23 22 21 25 25 C 1.53001 * 117.49757 * 243.87198 * 24 23 22 26 26 C 1.52993 * 117.50041 * 175.25150 * 24 23 22 27 27 C 1.35699 * 126.06696 * 225.42217 * 19 18 15 28 28 H 0.97006 * 119.99689 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.12947 * 359.97438 * 10 9 7 30 30 H 1.07997 * 119.87476 * 179.72312 * 11 10 9 31 31 H 1.08003 * 119.74703 * 180.02562 * 12 11 10 32 32 H 1.08002 * 119.87377 * 179.97438 * 13 12 11 33 33 H 0.96991 * 119.99802 * 242.62235 * 18 15 14 34 34 H 1.08004 * 125.81517 * 359.97438 * 20 19 18 35 35 H 1.09002 * 109.46550 * 65.61654 * 23 22 21 36 36 H 1.09003 * 109.47233 * 185.60965 * 23 22 21 37 37 H 1.08998 * 115.55283 * 29.57397 * 24 23 22 38 38 H 1.09002 * 117.50118 * 0.02562 * 25 24 23 39 39 H 1.09000 * 117.49773 * 145.01287 * 25 24 23 40 40 H 1.09001 * 117.50204 * 214.97869 * 26 24 23 41 41 H 1.08999 * 117.50270 * 359.97438 * 26 24 23 42 42 H 1.08007 * 126.22389 * 0.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6176 0.0000 4 1 3.6976 1.3489 -0.1222 5 1 1.7942 2.4479 -1.1468 6 1 1.9775 2.3422 1.2690 7 6 2.0080 -1.2120 0.0005 8 1 3.0720 -1.2214 -0.1844 9 6 1.3218 -2.4243 0.2431 10 6 0.1988 -2.4459 1.0909 11 6 -0.4577 -3.6324 1.3243 12 6 -0.0204 -4.8027 0.7228 13 6 1.0811 -4.7922 -0.1186 14 6 1.7531 -3.6169 -0.3664 15 16 3.1525 -3.6071 -1.4370 16 8 2.9646 -2.5203 -2.3331 17 8 3.3363 -4.9481 -1.8694 18 7 4.4738 -3.2283 -0.5132 19 6 4.8689 -4.0826 0.5339 20 6 4.9653 -5.4800 0.4676 21 7 5.3631 -5.9216 1.6333 22 7 5.5358 -4.8235 2.4857 23 6 5.9725 -4.8765 3.8831 24 6 5.0622 -5.8244 4.6664 25 6 4.2167 -5.2233 5.7911 26 6 5.4222 -6.1034 6.1270 27 6 5.2189 -3.7003 1.7880 28 1 -0.4850 0.8401 0.0004 29 1 -0.1436 -1.5356 1.5605 30 1 -1.3171 -3.6522 1.9781 31 1 -0.5420 -5.7295 0.9113 32 1 1.4133 -5.7097 -0.5815 33 1 4.9754 -2.4180 -0.6936 34 1 4.7482 -6.0881 -0.3982 35 1 6.9996 -5.2384 3.9292 36 1 5.9190 -3.8787 4.3186 37 1 4.6268 -6.6410 4.0905 38 1 4.3087 -4.1524 5.9726 39 1 3.2248 -5.6443 5.9551 40 1 5.2234 -7.1036 6.5121 41 1 6.3078 -5.6121 6.5298 42 1 5.2442 -2.6877 2.1628 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619463166.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:48 Heat of formation + Delta-G solvation = 48.762949 kcal Electronic energy + Delta-G solvation = -28585.257826 eV Core-core repulsion = 24659.612248 eV Total energy + Delta-G solvation = -3925.645578 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.90245 -37.70218 -37.57684 -36.24070 -34.86728 -34.56886 -33.83406 -32.15596 -30.21589 -29.56802 -28.86827 -26.28889 -25.51065 -22.59514 -21.81558 -21.66168 -21.17865 -20.86270 -20.25760 -18.55107 -17.70678 -17.41396 -16.73703 -16.24932 -15.76116 -15.45792 -15.28260 -14.88867 -14.48048 -14.31325 -14.00064 -13.65807 -13.30649 -13.26473 -13.07555 -12.74479 -12.69586 -11.93340 -11.83435 -11.74809 -11.56524 -11.39580 -11.29652 -11.15655 -11.09815 -11.03076 -10.90498 -10.72499 -10.62430 -10.49828 -10.25646 -10.03297 -9.87067 -9.44414 -9.19406 -9.15177 -8.02373 -7.70571 -7.56611 -7.01709 -4.75204 1.43351 2.07378 2.34521 2.56958 2.73048 2.96362 3.01783 3.07855 3.09952 3.58214 3.77499 3.94015 4.27994 4.42714 4.62946 4.68799 4.74227 4.89883 5.07022 5.15362 5.28923 5.30065 5.41497 5.46070 5.60535 5.69569 5.73611 5.84737 5.90091 6.05445 6.06851 6.24406 6.37997 6.44356 6.78037 6.91199 6.94483 7.08228 7.12937 7.32021 7.49022 7.56945 7.66864 7.80629 7.89735 7.90937 8.28206 8.51875 8.64925 9.93378 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009732 B = 0.004443 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.408017 B = 6300.587158 C = 6748.388741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.082 3.918 3 Si 0.915 3.085 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.452 4.452 8 H 0.086 0.914 9 C 0.191 3.809 10 C -0.156 4.156 11 C -0.076 4.076 12 C -0.247 4.247 13 C 0.000 4.000 14 C -0.764 4.764 15 S 2.698 3.302 16 O -0.959 6.959 17 O -0.991 6.991 18 N -1.038 6.038 19 C 0.018 3.982 20 C 0.044 3.956 21 N -0.283 5.283 22 N -0.373 5.373 23 C 0.174 3.826 24 C -0.168 4.168 25 C -0.176 4.176 26 C -0.173 4.173 27 C 0.044 3.956 28 H 0.286 0.714 29 H 0.120 0.880 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.415 0.585 34 H 0.198 0.802 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.600 -3.499 9.755 14.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.139 4.139 3 Si 0.738 3.262 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.481 4.481 8 H 0.104 0.896 9 C 0.187 3.813 10 C -0.176 4.176 11 C -0.095 4.095 12 C -0.268 4.268 13 C -0.020 4.020 14 C -0.859 4.859 15 S 2.797 3.203 16 O -0.949 6.949 17 O -0.982 6.982 18 N -0.787 5.787 19 C -0.088 4.088 20 C -0.145 4.145 21 N -0.104 5.104 22 N -0.158 5.158 23 C 0.053 3.947 24 C -0.187 4.187 25 C -0.213 4.213 26 C -0.210 4.210 27 C -0.104 4.104 28 H 0.097 0.903 29 H 0.138 0.862 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.126 0.874 33 H 0.250 0.750 34 H 0.214 0.786 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.137 0.863 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 9.698 -4.659 9.618 14.431 hybrid contribution -0.362 2.007 0.155 2.045 sum 9.336 -2.652 9.773 13.773 Atomic orbital electron populations 1.69786 1.07727 1.29968 1.32767 1.25900 0.94860 1.01658 0.91466 0.86140 0.81115 0.80165 0.78766 1.17871 1.19418 1.19507 1.19796 0.96560 0.90786 1.40976 0.89638 1.16990 0.89743 0.89660 0.84929 1.21399 0.98713 0.96505 1.00949 1.20892 0.97409 0.93576 0.97578 1.20488 1.02058 0.97122 1.07084 1.20249 0.93294 0.95022 0.93413 1.29835 1.25425 1.01206 1.29471 1.01320 0.72847 0.72595 0.73542 1.93557 1.85106 1.54583 1.61666 1.93424 1.86183 1.38006 1.80562 1.53088 1.46068 1.33526 1.45977 1.17158 1.12993 0.89913 0.88784 1.24383 0.99334 0.93766 0.97018 1.77251 1.22611 1.09712 1.00870 1.48332 1.53382 1.03906 1.10193 1.21167 0.97582 1.00332 0.75668 1.22594 1.02767 1.02510 0.90849 1.23092 0.96212 0.99543 1.02432 1.22954 0.99644 1.01511 0.96900 1.22401 1.03545 0.92968 0.91498 0.90253 0.86220 0.88878 0.88771 0.87387 0.74973 0.78550 0.89604 0.88676 0.86291 0.88508 0.88518 0.88496 0.88618 0.80555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.09 11.08 55.55 0.62 -18.47 16 2 C 0.08 1.95 5.22 -17.34 -0.09 1.86 16 3 Si 0.91 17.66 29.57 -169.99 -5.03 12.63 16 4 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 7 C -0.45 -11.14 7.51 -37.74 -0.28 -11.42 16 8 H 0.09 1.95 6.01 -52.49 -0.32 1.63 16 9 C 0.19 4.83 5.51 -106.82 -0.59 4.24 16 10 C -0.16 -3.83 8.64 -38.87 -0.34 -4.17 16 11 C -0.08 -1.70 10.02 -39.66 -0.40 -2.10 16 12 C -0.25 -5.47 10.05 -39.29 -0.39 -5.87 16 13 C 0.00 0.00 9.53 -39.67 -0.38 -0.37 16 14 C -0.76 -18.30 5.86 -38.87 -0.23 -18.53 16 15 S 2.70 58.92 4.92 -107.50 -0.53 58.39 16 16 O -0.96 -23.62 16.57 -57.17 -0.95 -24.57 16 17 O -0.99 -21.96 14.91 -57.17 -0.85 -22.81 16 18 N -1.04 -18.49 5.07 32.30 0.16 -18.32 16 19 C 0.02 0.31 6.53 -83.90 -0.55 -0.24 16 20 C 0.04 0.76 11.20 -17.22 -0.19 0.57 16 21 N -0.28 -4.65 12.21 30.70 0.37 -4.27 16 22 N -0.37 -5.23 3.71 -61.00 -0.23 -5.46 16 23 C 0.17 1.74 6.80 -4.04 -0.03 1.72 16 24 C -0.17 -1.74 5.92 -90.63 -0.54 -2.28 16 25 C -0.18 -1.65 10.18 -26.73 -0.27 -1.92 16 26 C -0.17 -1.36 10.25 -26.74 -0.27 -1.63 16 27 C 0.04 0.65 11.52 -16.63 -0.19 0.46 16 28 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 29 H 0.12 2.96 6.47 -52.49 -0.34 2.62 16 30 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 31 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 32 H 0.11 2.31 7.32 -52.49 -0.38 1.92 16 33 H 0.42 6.36 8.81 -34.47 -0.30 6.05 16 34 H 0.20 3.39 6.84 -52.48 -0.36 3.03 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 0.74 7.81 -51.93 -0.41 0.34 16 37 H 0.12 1.51 7.90 -51.93 -0.41 1.10 16 38 H 0.10 0.83 8.03 -51.93 -0.42 0.41 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.18 2.09 8.06 -52.48 -0.42 1.66 16 LS Contribution 368.35 15.07 5.55 5.55 Total: -1.00 -31.30 368.35 -10.65 -41.94 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.09 kcal Atomic # 6 Polarization: -34.96 SS G_CDS: -4.74 Total: -39.70 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.93 Total: -46.52 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: -1.80 Total: -47.38 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Atomic # 16 Polarization: 58.92 SS G_CDS: -0.53 Total: 58.39 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.30 -10.65 -41.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619463166.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.706 kcal (2) G-P(sol) polarization free energy of solvation -31.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds