Wall clock time and date at job start Wed Apr 1 2020 03:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86793 * 120.00192 * 2 1 4 4 H 1.48505 * 109.47227 * 185.00832 * 3 2 1 5 5 H 1.48498 * 109.47232 * 305.00609 * 3 2 1 6 6 H 1.48502 * 109.47519 * 65.00820 * 3 2 1 7 7 C 1.39946 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00620 * 168.59684 * 7 2 1 9 9 C 1.41400 * 119.99575 * 348.60196 * 7 2 1 10 10 C 1.40732 * 120.24743 * 328.41604 * 9 7 2 11 11 C 1.37600 * 119.74554 * 180.28037 * 10 9 7 12 12 C 1.38658 * 120.24731 * 359.69364 * 11 10 9 13 13 C 1.38613 * 120.50033 * 0.03207 * 12 11 10 14 14 C 1.37629 * 120.25022 * 359.96857 * 13 12 11 15 15 S 1.76203 * 120.12844 * 180.02562 * 14 13 12 16 16 O 1.42098 * 106.40279 * 132.47757 * 15 14 13 17 17 O 1.42095 * 106.40124 * 359.55691 * 15 14 13 18 18 N 1.65605 * 107.21940 * 246.01650 * 15 14 13 19 19 C 1.40802 * 119.99812 * 62.62399 * 18 15 14 20 20 C 1.40223 * 126.06911 * 45.13843 * 19 18 15 21 21 N 1.30851 * 108.36510 * 179.97438 * 20 19 18 22 22 N 1.40075 * 108.36294 * 359.97438 * 21 20 19 23 23 C 1.46502 * 126.07407 * 179.97438 * 22 21 20 24 24 C 1.52995 * 109.47511 * 305.61715 * 23 22 21 25 25 C 1.53001 * 117.49757 * 243.87198 * 24 23 22 26 26 C 1.52993 * 117.50041 * 175.25150 * 24 23 22 27 27 C 1.35699 * 126.06696 * 225.42217 * 19 18 15 28 28 H 0.97006 * 119.99689 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.12947 * 359.97438 * 10 9 7 30 30 H 1.07997 * 119.87476 * 179.72312 * 11 10 9 31 31 H 1.08003 * 119.74703 * 180.02562 * 12 11 10 32 32 H 1.08002 * 119.87377 * 179.97438 * 13 12 11 33 33 H 0.96991 * 119.99802 * 242.62235 * 18 15 14 34 34 H 1.08004 * 125.81517 * 359.97438 * 20 19 18 35 35 H 1.09002 * 109.46550 * 65.61654 * 23 22 21 36 36 H 1.09003 * 109.47233 * 185.60965 * 23 22 21 37 37 H 1.08998 * 115.55283 * 29.57397 * 24 23 22 38 38 H 1.09002 * 117.50118 * 0.02562 * 25 24 23 39 39 H 1.09000 * 117.49773 * 145.01287 * 25 24 23 40 40 H 1.09001 * 117.50204 * 214.97869 * 26 24 23 41 41 H 1.08999 * 117.50270 * 359.97438 * 26 24 23 42 42 H 1.08007 * 126.22389 * 0.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6176 0.0000 4 1 3.6976 1.3489 -0.1222 5 1 1.7942 2.4479 -1.1468 6 1 1.9775 2.3422 1.2690 7 6 2.0080 -1.2120 0.0005 8 1 3.0720 -1.2214 -0.1844 9 6 1.3218 -2.4243 0.2431 10 6 0.1988 -2.4459 1.0909 11 6 -0.4577 -3.6324 1.3243 12 6 -0.0204 -4.8027 0.7228 13 6 1.0811 -4.7922 -0.1186 14 6 1.7531 -3.6169 -0.3664 15 16 3.1525 -3.6071 -1.4370 16 8 2.9646 -2.5203 -2.3331 17 8 3.3363 -4.9481 -1.8694 18 7 4.4738 -3.2283 -0.5132 19 6 4.8689 -4.0826 0.5339 20 6 4.9653 -5.4800 0.4676 21 7 5.3631 -5.9216 1.6333 22 7 5.5358 -4.8235 2.4857 23 6 5.9725 -4.8765 3.8831 24 6 5.0622 -5.8244 4.6664 25 6 4.2167 -5.2233 5.7911 26 6 5.4222 -6.1034 6.1270 27 6 5.2189 -3.7003 1.7880 28 1 -0.4850 0.8401 0.0004 29 1 -0.1436 -1.5356 1.5605 30 1 -1.3171 -3.6522 1.9781 31 1 -0.5420 -5.7295 0.9113 32 1 1.4133 -5.7097 -0.5815 33 1 4.9754 -2.4180 -0.6936 34 1 4.7482 -6.0881 -0.3982 35 1 6.9996 -5.2384 3.9292 36 1 5.9190 -3.8787 4.3186 37 1 4.6268 -6.6410 4.0905 38 1 4.3087 -4.1524 5.9726 39 1 3.2248 -5.6443 5.9551 40 1 5.2234 -7.1036 6.5121 41 1 6.3078 -5.6121 6.5298 42 1 5.2442 -2.6877 2.1628 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619463166.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:47 Heat of formation + Delta-G solvation = 29.561841 kcal Electronic energy + Delta-G solvation = -28586.090449 eV Core-core repulsion = 24659.612248 eV Total energy + Delta-G solvation = -3926.478200 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.09789 -39.36426 -38.47556 -38.01974 -36.67763 -35.94115 -35.57077 -33.26324 -32.00647 -31.36482 -30.03687 -27.41799 -27.24691 -23.44966 -23.27307 -22.95012 -22.85844 -22.10412 -21.31361 -20.08676 -19.46685 -18.72810 -18.34558 -17.76630 -17.20026 -16.95331 -16.39771 -16.03661 -15.98465 -15.90448 -15.11244 -15.02277 -14.93192 -14.67446 -14.43931 -14.20872 -13.86999 -13.69186 -13.28931 -13.01829 -12.94116 -12.90011 -12.83043 -12.78306 -12.66810 -12.48207 -12.37217 -12.17964 -12.08710 -11.61566 -11.46351 -11.34127 -11.16298 -10.98467 -10.90934 -10.30722 -9.82629 -9.39455 -8.98831 -8.75859 -6.58447 -0.24081 0.54584 0.88485 0.98593 1.40196 1.51971 1.52503 1.55732 1.77246 2.19293 2.35421 2.66568 2.87728 2.96279 3.45682 3.49204 3.87710 3.90068 3.93946 4.03781 4.07088 4.28907 4.32627 4.38954 4.47401 4.49576 4.59254 4.70147 4.78057 4.80092 4.98137 5.01919 5.10292 5.14959 5.23255 5.26194 5.31300 5.53643 5.61056 5.71357 5.82643 5.99807 6.04407 6.10065 6.29688 6.48231 6.67418 6.71658 6.84538 8.22333 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009732 B = 0.004443 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.408017 B = 6300.587158 C = 6748.388741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.040 3.960 3 Si 0.976 3.024 4 H -0.243 1.243 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.477 4.477 8 H 0.096 0.904 9 C 0.168 3.832 10 C -0.180 4.180 11 C -0.076 4.076 12 C -0.251 4.251 13 C -0.015 4.015 14 C -0.781 4.781 15 S 2.718 3.282 16 O -0.991 6.991 17 O -1.000 7.000 18 N -1.023 6.023 19 C -0.013 4.013 20 C 0.026 3.974 21 N -0.298 5.298 22 N -0.363 5.363 23 C 0.165 3.835 24 C -0.187 4.187 25 C -0.184 4.184 26 C -0.148 4.148 27 C 0.060 3.940 28 H 0.294 0.706 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.427 0.573 34 H 0.188 0.812 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.120 0.880 42 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.163 -2.674 11.805 16.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.178 4.178 3 Si 0.796 3.204 4 H -0.166 1.166 5 H -0.198 1.198 6 H -0.179 1.179 7 C -0.505 4.505 8 H 0.114 0.886 9 C 0.164 3.836 10 C -0.200 4.200 11 C -0.095 4.095 12 C -0.271 4.271 13 C -0.034 4.034 14 C -0.876 4.876 15 S 2.815 3.185 16 O -0.982 6.982 17 O -0.990 6.990 18 N -0.776 5.776 19 C -0.119 4.119 20 C -0.162 4.162 21 N -0.120 5.120 22 N -0.147 5.147 23 C 0.046 3.954 24 C -0.206 4.206 25 C -0.221 4.221 26 C -0.185 4.185 27 C -0.090 4.090 28 H 0.105 0.895 29 H 0.129 0.871 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.265 0.735 34 H 0.205 0.795 35 H 0.124 0.876 36 H 0.143 0.857 37 H 0.107 0.893 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.119 0.881 41 H 0.138 0.862 42 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 11.251 -3.863 11.693 16.680 hybrid contribution -0.846 1.613 -0.385 1.862 sum 10.404 -2.250 11.308 15.530 Atomic orbital electron populations 1.69834 1.09152 1.31276 1.33473 1.26807 0.95604 1.04803 0.90586 0.85230 0.80353 0.75723 0.79120 1.16561 1.19760 1.17877 1.20115 0.97242 0.91311 1.41868 0.88646 1.17302 0.90388 0.90473 0.85486 1.21465 0.99670 0.96997 1.01901 1.21216 0.97802 0.93000 0.97457 1.20856 1.01727 0.98208 1.06348 1.20544 0.93728 0.95306 0.93863 1.30148 1.26744 1.01236 1.29429 1.00642 0.72859 0.71874 0.73144 1.93504 1.85867 1.55649 1.63152 1.93407 1.86341 1.38355 1.80875 1.52501 1.44608 1.34272 1.46248 1.17333 1.15304 0.89694 0.89599 1.24333 1.00388 0.94157 0.97342 1.77209 1.22960 1.10889 1.00926 1.48743 1.51719 1.03074 1.11196 1.21625 0.98293 1.02140 0.73386 1.22477 1.04005 1.02309 0.91853 1.23164 0.96316 1.00475 1.02135 1.23056 0.99585 1.01593 0.94277 1.22874 1.01219 0.94352 0.90583 0.89519 0.87132 0.86122 0.85949 0.86380 0.73517 0.79486 0.87648 0.85666 0.89342 0.87342 0.89665 0.88136 0.86190 0.77393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.32 11.08 21.83 0.24 -40.08 16 2 C 0.04 1.87 5.22 85.26 0.45 2.31 16 3 Si 0.98 35.29 29.57 68.60 2.03 37.32 16 4 H -0.24 -8.19 7.11 99.48 0.71 -7.49 16 5 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 6 H -0.25 -8.49 7.11 99.48 0.71 -7.79 16 7 C -0.48 -23.58 7.51 23.46 0.18 -23.41 16 8 H 0.10 4.32 6.01 -2.91 -0.02 4.31 16 9 C 0.17 8.59 5.51 -21.29 -0.12 8.47 16 10 C -0.18 -8.98 8.64 22.73 0.20 -8.79 16 11 C -0.08 -3.39 10.02 22.22 0.22 -3.17 16 12 C -0.25 -10.95 10.05 22.46 0.23 -10.72 16 13 C -0.01 -0.68 9.53 22.22 0.21 -0.47 16 14 C -0.78 -37.91 5.86 22.73 0.13 -37.77 16 15 S 2.72 120.03 4.92 -56.49 -0.28 119.75 16 16 O -0.99 -49.61 16.57 -128.00 -2.12 -51.73 16 17 O -1.00 -44.97 14.91 -128.00 -1.91 -46.88 16 18 N -1.02 -36.09 5.07 -51.74 -0.26 -36.35 16 19 C -0.01 -0.43 6.53 37.59 0.25 -0.19 16 20 C 0.03 0.90 11.20 85.32 0.96 1.85 16 21 N -0.30 -9.64 12.21 -56.78 -0.69 -10.34 16 22 N -0.36 -9.50 3.71 -346.89 -1.29 -10.79 16 23 C 0.17 2.82 6.80 86.38 0.59 3.41 16 24 C -0.19 -3.56 5.92 -10.80 -0.06 -3.63 16 25 C -0.18 -3.09 10.18 30.59 0.31 -2.78 16 26 C -0.15 -1.92 10.25 30.59 0.31 -1.60 16 27 C 0.06 1.63 11.52 83.46 0.96 2.59 16 28 H 0.29 13.05 8.30 -92.70 -0.77 12.28 16 29 H 0.11 5.59 6.47 -2.91 -0.02 5.57 16 30 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 31 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 32 H 0.12 5.08 7.32 -2.91 -0.02 5.06 16 33 H 0.43 12.74 8.81 -96.75 -0.85 11.89 16 34 H 0.19 6.69 6.84 -2.91 -0.02 6.67 16 35 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.13 1.41 7.81 -2.39 -0.02 1.39 16 37 H 0.09 2.25 7.90 -2.39 -0.02 2.23 16 38 H 0.11 1.55 8.03 -2.39 -0.02 1.53 16 39 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.21 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -68.81 368.35 0.74 -68.07 By element: Atomic # 1 Polarization: 44.68 SS G_CDS: 0.22 Total: 44.89 kcal Atomic # 6 Polarization: -78.68 SS G_CDS: 4.80 Total: -73.87 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -2.00 Total: -97.55 kcal Atomic # 8 Polarization: -94.58 SS G_CDS: -4.03 Total: -98.61 kcal Atomic # 14 Polarization: 35.29 SS G_CDS: 2.03 Total: 37.32 kcal Atomic # 16 Polarization: 120.03 SS G_CDS: -0.28 Total: 119.75 kcal Total: -68.81 0.74 -68.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619463166.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.627 kcal (2) G-P(sol) polarization free energy of solvation -68.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds