Wall clock time and date at job start Wed Apr 1 2020 05:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38146 * 126.31273 * 2 1 4 4 C 1.47334 * 126.41881 * 359.97438 * 3 2 1 5 5 O 1.21629 * 119.99939 * 40.57252 * 4 3 2 6 6 N 1.34774 * 119.99833 * 220.56870 * 4 3 2 7 7 C 1.36974 * 120.00131 * 185.19128 * 6 4 3 8 8 H 1.08004 * 119.99867 * 346.33533 * 7 6 4 9 9 C 1.38977 * 120.00684 * 166.34373 * 7 6 4 10 10 N 1.31411 * 119.99589 * 1.58911 * 9 7 6 11 11 Si 1.86793 * 120.00617 * 181.59315 * 9 7 6 12 12 H 1.48499 * 109.47228 * 89.99574 * 11 9 7 13 13 H 1.48501 * 109.47404 * 209.99764 * 11 9 7 14 14 H 1.48504 * 109.46966 * 329.99713 * 11 9 7 15 15 C 1.46506 * 120.00344 * 5.18946 * 6 4 3 16 16 C 1.50702 * 109.47072 * 264.82864 * 15 6 4 17 17 O 1.20829 * 120.00210 * 359.97438 * 16 15 6 18 18 O 1.34230 * 119.99918 * 179.97438 * 16 15 6 19 19 C 1.41351 * 107.16132 * 180.24115 * 3 2 1 20 20 N 1.30485 * 108.07267 * 359.76227 * 19 3 2 21 21 N 1.34538 * 126.31633 * 179.82878 * 2 1 3 22 22 C 1.40206 * 125.76857 * 0.02562 * 21 2 1 23 23 C 1.38814 * 120.07806 * 311.68626 * 22 21 2 24 24 C 1.38128 * 119.95496 * 179.97438 * 23 22 21 25 25 C 1.38290 * 120.11820 * 0.02562 * 24 23 22 26 26 C 1.38241 * 120.15437 * 359.97438 * 25 24 23 27 27 C 1.38332 * 120.04239 * 0.02562 * 26 25 24 28 28 F 1.35105 * 120.05539 * 180.02562 * 27 26 25 29 29 H 1.09003 * 109.46846 * 275.03046 * 1 2 3 30 30 H 1.08994 * 109.47314 * 35.03465 * 1 2 3 31 31 H 1.09001 * 109.47034 * 155.03705 * 1 2 3 32 32 H 0.97002 * 120.00105 * 180.02562 * 10 9 7 33 33 H 1.09006 * 109.46648 * 24.82734 * 15 6 4 34 34 H 1.08996 * 109.47571 * 144.82710 * 15 6 4 35 35 H 0.96694 * 117.00131 * 180.02562 * 18 16 15 36 36 H 1.08005 * 125.96983 * 179.76492 * 19 3 2 37 37 H 1.08002 * 120.01977 * 0.02562 * 23 22 21 38 38 H 1.08002 * 119.93667 * 180.02562 * 24 23 22 39 39 H 1.08003 * 119.91935 * 180.27548 * 25 24 23 40 40 H 1.08004 * 119.98062 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3251 1.1132 0.0000 4 6 1.8877 2.5201 -0.0005 5 8 0.9429 2.8635 0.6841 6 7 2.5347 3.4266 -0.7596 7 6 2.1978 4.7518 -0.6802 8 1 1.2831 5.0479 -0.1880 9 6 3.0327 5.7156 -1.2330 10 7 4.1297 5.3533 -1.8593 11 14 2.5957 7.5257 -1.0858 12 1 3.1913 8.0793 0.1567 13 1 3.1291 8.2609 -2.2606 14 1 1.1191 7.6760 -1.0365 15 6 3.5983 2.9945 -1.6698 16 6 4.9345 3.1486 -0.9900 17 8 4.9924 3.5759 0.1387 18 8 6.0602 2.8111 -1.6385 19 6 3.6604 0.6495 -0.0057 20 7 3.6358 -0.6552 -0.0037 21 7 2.3038 -1.0841 0.0032 22 6 1.8725 -2.4181 0.0067 23 6 0.8981 -2.8319 0.9046 24 6 0.4747 -4.1467 0.9054 25 6 1.0202 -5.0520 0.0136 26 6 1.9910 -4.6450 -0.8825 27 6 2.4198 -3.3298 -0.8891 28 9 3.3681 -2.9317 -1.7651 29 1 -0.3633 0.0901 1.0238 30 1 -0.3633 0.8414 -0.5899 31 1 -0.3633 -0.9317 -0.4337 32 1 4.7127 6.0260 -2.2448 33 1 3.4451 1.9490 -1.9373 34 1 3.5764 3.6071 -2.5711 35 1 6.8932 2.9271 -1.1614 36 1 4.5464 1.2671 -0.0107 37 1 0.4707 -2.1261 1.6014 38 1 -0.2838 -4.4682 1.6038 39 1 0.6836 -6.0782 0.0141 40 1 2.4154 -5.3545 -1.5775 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738258834.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:19 Heat of formation + Delta-G solvation = -35.057123 kcal Electronic energy + Delta-G solvation = -30919.946219 eV Core-core repulsion = 26424.452754 eV Total energy + Delta-G solvation = -4495.493465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.00522 -41.48105 -39.46565 -38.95502 -37.84781 -35.23127 -34.42720 -33.80986 -31.95954 -31.65335 -30.94729 -29.17779 -27.69494 -27.18823 -24.90536 -23.62254 -23.20239 -21.65022 -21.02179 -20.55915 -18.64342 -17.96036 -17.36978 -17.09452 -16.84288 -16.72203 -15.93024 -15.74272 -15.53947 -15.34327 -14.87275 -14.76411 -14.55537 -14.33906 -14.07291 -13.73549 -13.39641 -13.34803 -12.79699 -12.71589 -12.61595 -12.52938 -12.30941 -12.00608 -11.79557 -11.77854 -11.53472 -11.23924 -10.94073 -10.66259 -10.42063 -10.40366 -10.33531 -9.93928 -9.58957 -9.24772 -9.07268 -8.80144 -8.67726 -8.08482 -7.98462 -6.39838 -3.94225 0.54677 0.77741 1.92303 2.34845 2.65763 3.16193 3.18273 3.25684 3.29009 3.52586 3.85707 3.92485 4.05300 4.28686 4.34727 4.49507 4.70050 4.75549 4.83077 4.88544 5.03634 5.12405 5.19000 5.32507 5.61764 5.63272 5.68606 5.76784 5.83960 5.87395 5.95382 6.02217 6.04253 6.20136 6.35811 6.58040 6.70844 6.89439 7.17383 7.49197 7.58128 7.76319 7.95984 8.35875 9.04826 9.10988 9.28635 9.81887 10.61732 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.019597 B = 0.003329 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.469082 B = 8407.962037 C = 9375.963769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.128 3.872 3 C -0.244 4.244 4 C 0.531 3.469 5 O -0.576 6.576 6 N -0.426 5.426 7 C -0.282 4.282 8 H 0.111 0.889 9 C 0.027 3.973 10 N -0.901 5.901 11 Si 0.942 3.058 12 H -0.278 1.278 13 H -0.283 1.283 14 H -0.269 1.269 15 C 0.145 3.855 16 C 0.495 3.505 17 O -0.519 6.519 18 O -0.532 6.532 19 C 0.086 3.914 20 N -0.289 5.289 21 N -0.330 5.330 22 C 0.123 3.877 23 C -0.094 4.094 24 C -0.114 4.114 25 C -0.091 4.091 26 C -0.143 4.143 27 C 0.113 3.887 28 F -0.121 7.121 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.272 0.728 33 H 0.069 0.931 34 H 0.147 0.853 35 H 0.390 0.610 36 H 0.185 0.815 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.292 -18.723 -0.695 19.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.002 3.998 3 C -0.257 4.257 4 C 0.320 3.680 5 O -0.460 6.460 6 N -0.144 5.144 7 C -0.409 4.409 8 H 0.129 0.871 9 C -0.173 4.173 10 N -0.545 5.545 11 Si 0.769 3.231 12 H -0.203 1.203 13 H -0.209 1.209 14 H -0.193 1.193 15 C 0.018 3.982 16 C 0.337 3.663 17 O -0.406 6.406 18 O -0.343 6.343 19 C -0.102 4.102 20 N -0.106 5.106 21 N -0.107 5.107 22 C 0.030 3.970 23 C -0.114 4.114 24 C -0.133 4.133 25 C -0.110 4.110 26 C -0.163 4.163 27 C 0.092 3.908 28 F -0.099 7.099 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.164 0.836 35 H 0.246 0.754 36 H 0.202 0.798 37 H 0.160 0.840 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.273 -19.425 -0.401 19.894 hybrid contribution 0.761 1.924 0.207 2.080 sum -3.512 -17.501 -0.195 17.851 Atomic orbital electron populations 1.20527 0.86215 1.03456 1.04317 1.21491 0.94677 0.85313 0.98289 1.20440 0.92172 0.94930 1.18202 1.16870 0.85830 0.83146 0.82180 1.90606 1.30487 1.80472 1.44386 1.43260 1.29501 1.07067 1.34568 1.19854 1.06748 0.79893 1.34377 0.87147 1.25260 0.94809 1.01044 0.96148 1.69529 1.13295 1.34299 1.37365 0.85657 0.78769 0.80870 0.77780 1.20350 1.20879 1.19348 1.21086 0.81673 0.99565 0.95839 1.23737 0.86009 0.72292 0.84230 1.90621 1.87098 1.42153 1.20720 1.84559 1.17487 1.80972 1.51249 1.24321 0.97964 0.91410 0.96521 1.77343 0.94381 1.13264 1.25568 1.45294 1.04893 1.02581 1.57903 1.17472 0.99610 0.81728 0.98173 1.21150 0.96566 0.97165 0.96563 1.21084 1.00576 0.92006 0.99620 1.21114 0.95244 1.00328 0.94299 1.21132 0.99695 0.93620 1.01812 1.17651 0.90538 0.93030 0.89590 1.91577 1.61171 1.91219 1.65946 0.89317 0.88675 0.91466 0.91671 0.91281 0.83579 0.75433 0.79799 0.84046 0.84270 0.84373 0.83855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.24 8.56 36.01 0.31 -0.93 16 2 C 0.13 2.32 6.84 -81.44 -0.56 1.76 16 3 C -0.24 -5.23 5.06 -105.05 -0.53 -5.76 16 4 C 0.53 13.32 7.31 -12.56 -0.09 13.23 16 5 O -0.58 -15.64 16.27 5.25 0.09 -15.56 16 6 N -0.43 -10.95 2.15 -117.34 -0.25 -11.20 16 7 C -0.28 -7.71 9.36 -14.98 -0.14 -7.85 16 8 H 0.11 3.11 7.22 -52.48 -0.38 2.73 16 9 C 0.03 0.69 5.35 -17.46 -0.09 0.60 16 10 N -0.90 -23.18 7.92 55.50 0.44 -22.74 16 11 Si 0.94 20.91 29.55 -169.99 -5.02 15.88 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 15 C 0.14 3.33 4.81 -5.19 -0.02 3.31 16 16 C 0.50 11.37 3.58 36.01 0.13 11.50 16 17 O -0.52 -13.64 16.44 -18.75 -0.31 -13.95 16 18 O -0.53 -10.13 13.42 -39.26 -0.53 -10.65 16 19 C 0.09 1.77 9.85 -16.94 -0.17 1.61 16 20 N -0.29 -5.64 11.96 30.88 0.37 -5.27 16 21 N -0.33 -5.71 3.54 -6.44 -0.02 -5.74 16 22 C 0.12 1.69 5.88 -83.52 -0.49 1.20 16 23 C -0.09 -0.97 8.48 -39.41 -0.33 -1.30 16 24 C -0.11 -0.82 10.04 -39.60 -0.40 -1.22 16 25 C -0.09 -0.61 10.04 -39.56 -0.40 -1.01 16 26 C -0.14 -1.27 10.02 -39.55 -0.40 -1.66 16 27 C 0.11 1.46 7.28 -39.25 -0.29 1.17 16 28 F -0.12 -1.86 16.65 2.25 0.04 -1.82 16 29 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.09 1.47 8.08 -51.93 -0.42 1.05 16 31 H 0.07 0.76 7.14 -51.93 -0.37 0.38 16 32 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 33 H 0.07 1.44 5.93 -51.93 -0.31 1.14 16 34 H 0.15 3.50 6.15 -51.93 -0.32 3.18 16 35 H 0.39 5.73 9.10 45.56 0.41 6.15 16 36 H 0.19 3.85 4.79 -52.48 -0.25 3.60 16 37 H 0.14 1.36 7.49 -52.49 -0.39 0.96 16 38 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.14 0.50 8.06 -52.48 -0.42 0.07 16 40 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 LS Contribution 348.24 15.07 5.25 5.25 Total: -1.00 -34.82 348.24 -6.28 -41.10 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -2.85 Total: 10.07 kcal Atomic # 6 Polarization: 18.11 SS G_CDS: -3.47 Total: 14.63 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.53 Total: -44.95 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -0.75 Total: -40.16 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.82 -6.28 -41.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738258834.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.039 kcal (2) G-P(sol) polarization free energy of solvation -34.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds