Wall clock time and date at job start Wed Apr 1 2020 05:10:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.38146 * 126.31273 * 2 1
4 4 C 1.47334 * 126.41881 * 359.97438 * 3 2 1
5 5 O 1.21629 * 119.99939 * 40.57252 * 4 3 2
6 6 N 1.34774 * 119.99833 * 220.56870 * 4 3 2
7 7 C 1.36974 * 120.00131 * 185.19128 * 6 4 3
8 8 H 1.08004 * 119.99867 * 346.33533 * 7 6 4
9 9 C 1.38977 * 120.00684 * 166.34373 * 7 6 4
10 10 N 1.31411 * 119.99589 * 1.58911 * 9 7 6
11 11 Si 1.86793 * 120.00617 * 181.59315 * 9 7 6
12 12 H 1.48499 * 109.47228 * 89.99574 * 11 9 7
13 13 H 1.48501 * 109.47404 * 209.99764 * 11 9 7
14 14 H 1.48504 * 109.46966 * 329.99713 * 11 9 7
15 15 C 1.46506 * 120.00344 * 5.18946 * 6 4 3
16 16 C 1.50702 * 109.47072 * 264.82864 * 15 6 4
17 17 O 1.20829 * 120.00210 * 359.97438 * 16 15 6
18 18 O 1.34230 * 119.99918 * 179.97438 * 16 15 6
19 19 C 1.41351 * 107.16132 * 180.24115 * 3 2 1
20 20 N 1.30485 * 108.07267 * 359.76227 * 19 3 2
21 21 N 1.34538 * 126.31633 * 179.82878 * 2 1 3
22 22 C 1.40206 * 125.76857 * 0.02562 * 21 2 1
23 23 C 1.38814 * 120.07806 * 311.68626 * 22 21 2
24 24 C 1.38128 * 119.95496 * 179.97438 * 23 22 21
25 25 C 1.38290 * 120.11820 * 0.02562 * 24 23 22
26 26 C 1.38241 * 120.15437 * 359.97438 * 25 24 23
27 27 C 1.38332 * 120.04239 * 0.02562 * 26 25 24
28 28 F 1.35105 * 120.05539 * 180.02562 * 27 26 25
29 29 H 1.09003 * 109.46846 * 275.03046 * 1 2 3
30 30 H 1.08994 * 109.47314 * 35.03465 * 1 2 3
31 31 H 1.09001 * 109.47034 * 155.03705 * 1 2 3
32 32 H 0.97002 * 120.00105 * 180.02562 * 10 9 7
33 33 H 1.09006 * 109.46648 * 24.82734 * 15 6 4
34 34 H 1.08996 * 109.47571 * 144.82710 * 15 6 4
35 35 H 0.96694 * 117.00131 * 180.02562 * 18 16 15
36 36 H 1.08005 * 125.96983 * 179.76492 * 19 3 2
37 37 H 1.08002 * 120.01977 * 0.02562 * 23 22 21
38 38 H 1.08002 * 119.93667 * 180.02562 * 24 23 22
39 39 H 1.08003 * 119.91935 * 180.27548 * 25 24 23
40 40 H 1.08004 * 119.98062 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3251 1.1132 0.0000
4 6 1.8877 2.5201 -0.0005
5 8 0.9429 2.8635 0.6841
6 7 2.5347 3.4266 -0.7596
7 6 2.1978 4.7518 -0.6802
8 1 1.2831 5.0479 -0.1880
9 6 3.0327 5.7156 -1.2330
10 7 4.1297 5.3533 -1.8593
11 14 2.5957 7.5257 -1.0858
12 1 3.1913 8.0793 0.1567
13 1 3.1291 8.2609 -2.2606
14 1 1.1191 7.6760 -1.0365
15 6 3.5983 2.9945 -1.6698
16 6 4.9345 3.1486 -0.9900
17 8 4.9924 3.5759 0.1387
18 8 6.0602 2.8111 -1.6385
19 6 3.6604 0.6495 -0.0057
20 7 3.6358 -0.6552 -0.0037
21 7 2.3038 -1.0841 0.0032
22 6 1.8725 -2.4181 0.0067
23 6 0.8981 -2.8319 0.9046
24 6 0.4747 -4.1467 0.9054
25 6 1.0202 -5.0520 0.0136
26 6 1.9910 -4.6450 -0.8825
27 6 2.4198 -3.3298 -0.8891
28 9 3.3681 -2.9317 -1.7651
29 1 -0.3633 0.0901 1.0238
30 1 -0.3633 0.8414 -0.5899
31 1 -0.3633 -0.9317 -0.4337
32 1 4.7127 6.0260 -2.2448
33 1 3.4451 1.9490 -1.9373
34 1 3.5764 3.6071 -2.5711
35 1 6.8932 2.9271 -1.1614
36 1 4.5464 1.2671 -0.0107
37 1 0.4707 -2.1261 1.6014
38 1 -0.2838 -4.4682 1.6038
39 1 0.6836 -6.0782 0.0141
40 1 2.4154 -5.3545 -1.5775
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000738258834.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:10:18
Heat of formation + Delta-G solvation = -58.080399 kcal
Electronic energy + Delta-G solvation = -30920.944583 eV
Core-core repulsion = 26424.452754 eV
Total energy + Delta-G solvation = -4496.491829 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 347.111 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-50.01974 -42.90368 -41.15966 -40.02577 -39.58483 -37.07054 -36.33177 -35.00520
-33.67545 -33.18397 -31.70033 -30.36908 -29.48867 -28.62257 -26.73123 -24.69895
-24.12343 -23.21717 -22.72343 -21.81385 -20.27034 -19.23512 -18.96847 -18.70614
-18.33813 -17.76042 -17.45394 -17.28891 -16.87052 -16.73979 -16.38178 -16.20053
-15.86541 -15.84407 -15.33335 -15.10665 -14.99226 -14.62673 -14.24377 -14.10269
-13.87449 -13.62782 -13.60676 -13.49963 -13.19082 -13.10116 -12.93418 -12.75574
-12.44348 -12.37198 -12.17541 -12.12367 -12.09134 -11.54190 -11.11421 -11.01383
-10.62196 -10.11041 -9.97115 -9.89836 -9.43778 -8.37216 -5.99523 -0.34906
0.06561 0.60117 1.01045 1.10880 1.39554 1.44688 1.54276 1.70946
2.15081 2.21425 2.44131 2.50509 2.97109 3.04287 3.20580 3.41527
3.46116 3.67015 3.83769 3.97197 4.12668 4.19108 4.23684 4.24967
4.34029 4.49154 4.55954 4.75629 4.87088 4.90399 4.94151 4.97110
5.01220 5.13650 5.22042 5.30878 5.41691 5.63716 5.92681 5.97493
5.98887 6.29273 6.38826 7.05321 7.26854 7.43119 7.87447 8.62072
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.019597 B = 0.003329 C = 0.002986
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1428.469082 B = 8407.962037 C = 9375.963769
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.083 4.083
2 C 0.147 3.853
3 C -0.286 4.286
4 C 0.528 3.472
5 O -0.610 6.610
6 N -0.438 5.438
7 C -0.319 4.319
8 H 0.090 0.910
9 C -0.004 4.004
10 N -0.908 5.908
11 Si 1.002 2.998
12 H -0.285 1.285
13 H -0.267 1.267
14 H -0.264 1.264
15 C 0.149 3.851
16 C 0.506 3.494
17 O -0.557 6.557
18 O -0.519 6.519
19 C 0.078 3.922
20 N -0.302 5.302
21 N -0.316 5.316
22 C 0.073 3.927
23 C -0.096 4.096
24 C -0.098 4.098
25 C -0.068 4.068
26 C -0.138 4.138
27 C 0.083 3.917
28 F -0.146 7.146
29 H 0.103 0.897
30 H 0.080 0.920
31 H 0.103 0.897
32 H 0.275 0.725
33 H 0.086 0.914
34 H 0.137 0.863
35 H 0.412 0.588
36 H 0.175 0.825
37 H 0.146 0.854
38 H 0.180 0.820
39 H 0.184 0.816
40 H 0.166 0.834
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.603 -21.937 -0.702 22.652
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C 0.018 3.982
3 C -0.300 4.300
4 C 0.318 3.682
5 O -0.496 6.496
6 N -0.155 5.155
7 C -0.446 4.446
8 H 0.108 0.892
9 C -0.202 4.202
10 N -0.550 5.550
11 Si 0.825 3.175
12 H -0.211 1.211
13 H -0.191 1.191
14 H -0.189 1.189
15 C 0.023 3.977
16 C 0.350 3.650
17 O -0.447 6.447
18 O -0.331 6.331
19 C -0.109 4.109
20 N -0.120 5.120
21 N -0.091 5.091
22 C -0.017 4.017
23 C -0.116 4.116
24 C -0.116 4.116
25 C -0.086 4.086
26 C -0.157 4.157
27 C 0.062 3.938
28 F -0.125 7.125
29 H 0.121 0.879
30 H 0.098 0.902
31 H 0.121 0.879
32 H 0.086 0.914
33 H 0.104 0.896
34 H 0.155 0.845
35 H 0.271 0.729
36 H 0.192 0.808
37 H 0.164 0.836
38 H 0.197 0.803
39 H 0.201 0.799
40 H 0.184 0.816
Dipole moment (debyes) X Y Z Total
from point charges -5.531 -22.697 -0.449 23.365
hybrid contribution 1.136 2.597 0.225 2.843
sum -4.396 -20.100 -0.224 20.576
Atomic orbital electron populations
1.20649 0.83527 1.04675 1.05241 1.21928 0.96137 0.84659 0.95464
1.20175 0.93316 0.93916 1.22566 1.17351 0.85075 0.84484 0.81309
1.90543 1.31918 1.81495 1.45688 1.43370 1.30230 1.06820 1.35127
1.19838 1.07146 0.81360 1.36305 0.89213 1.26015 0.94578 1.04421
0.95226 1.69618 1.13326 1.35278 1.36785 0.84795 0.78739 0.76224
0.77725 1.21136 1.19105 1.18853 1.21022 0.81533 1.00191 0.94905
1.23565 0.86740 0.71216 0.83500 1.90601 1.87757 1.44102 1.22270
1.84480 1.17780 1.80128 1.50717 1.24082 0.97402 0.91794 0.97634
1.77252 0.96416 1.12474 1.25863 1.45476 1.03767 1.04057 1.55827
1.18020 1.02392 0.80188 1.01137 1.21379 0.95484 0.98909 0.95803
1.21592 1.00205 0.90284 0.99513 1.21701 0.92812 1.02196 0.91883
1.21507 0.99713 0.92006 1.02453 1.18143 0.91038 0.94642 0.90015
1.91508 1.62387 1.91686 1.66915 0.87865 0.90160 0.87879 0.91406
0.89611 0.84540 0.72892 0.80842 0.83590 0.80286 0.79882 0.81636
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -2.31 8.56 71.24 0.61 -1.70 16
2 C 0.15 5.39 6.84 42.12 0.29 5.68 16
3 C -0.29 -12.82 5.06 -20.14 -0.10 -12.92 16
4 C 0.53 27.94 7.31 86.64 0.63 28.57 16
5 O -0.61 -34.98 16.27 -4.12 -0.07 -35.05 16
6 N -0.44 -23.69 2.15 -643.39 -1.39 -25.08 16
7 C -0.32 -18.33 9.36 84.07 0.79 -17.54 16
8 H 0.09 5.38 7.22 -2.91 -0.02 5.36 16
9 C 0.00 -0.22 5.35 84.93 0.45 0.23 16
10 N -0.91 -47.40 7.92 21.67 0.17 -47.23 16
11 Si 1.00 43.50 29.55 68.60 2.03 45.53 16
12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16
13 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16
14 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16
15 C 0.15 7.17 4.81 85.63 0.41 7.58 16
16 C 0.51 23.92 3.58 71.24 0.26 24.18 16
17 O -0.56 -30.37 16.44 21.96 0.36 -30.00 16
18 O -0.52 -19.80 13.42 -51.41 -0.69 -20.49 16
19 C 0.08 3.38 9.85 85.66 0.84 4.22 16
20 N -0.30 -12.19 11.96 -56.21 -0.67 -12.86 16
21 N -0.32 -10.98 3.54 -174.29 -0.62 -11.60 16
22 C 0.07 1.93 5.88 38.13 0.22 2.15 16
23 C -0.10 -1.67 8.48 22.38 0.19 -1.48 16
24 C -0.10 -0.88 10.04 22.26 0.22 -0.65 16
25 C -0.07 -0.52 10.04 22.28 0.22 -0.29 16
26 C -0.14 -1.94 10.02 22.29 0.22 -1.71 16
27 C 0.08 2.02 7.28 22.48 0.16 2.18 16
28 F -0.15 -4.55 16.65 44.97 0.75 -3.80 16
29 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16
30 H 0.08 2.52 8.08 -2.39 -0.02 2.50 16
31 H 0.10 2.09 7.14 -2.39 -0.02 2.07 16
32 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16
33 H 0.09 3.77 5.93 -2.38 -0.01 3.76 16
34 H 0.14 6.78 6.15 -2.39 -0.01 6.77 16
35 H 0.41 11.90 9.10 -74.06 -0.67 11.23 16
36 H 0.17 7.70 4.79 -2.91 -0.01 7.69 16
37 H 0.15 2.38 7.49 -2.91 -0.02 2.36 16
38 H 0.18 0.29 8.06 -2.91 -0.02 0.26 16
39 H 0.18 -0.11 8.06 -2.91 -0.02 -0.14 16
40 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16
Total: -1.00 -81.55 348.24 5.77 -75.78
By element:
Atomic # 1 Polarization: 25.85 SS G_CDS: 0.46 Total: 26.32 kcal
Atomic # 6 Polarization: 33.06 SS G_CDS: 5.43 Total: 38.49 kcal
Atomic # 7 Polarization: -94.26 SS G_CDS: -2.50 Total: -96.77 kcal
Atomic # 8 Polarization: -85.14 SS G_CDS: -0.40 Total: -85.54 kcal
Atomic # 9 Polarization: -4.55 SS G_CDS: 0.75 Total: -3.80 kcal
Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal
Total: -81.55 5.77 -75.78 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000738258834.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.701 kcal
(2) G-P(sol) polarization free energy of solvation -81.553 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.852 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.772 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.781 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.080 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds