Wall clock time and date at job start Wed Apr 1 2020 05:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38146 * 126.31273 * 2 1 4 4 C 1.47334 * 126.41881 * 359.97438 * 3 2 1 5 5 O 1.21629 * 119.99939 * 40.57252 * 4 3 2 6 6 N 1.34774 * 119.99833 * 220.56870 * 4 3 2 7 7 C 1.36974 * 120.00131 * 185.19128 * 6 4 3 8 8 H 1.08004 * 119.99867 * 346.33533 * 7 6 4 9 9 C 1.38977 * 120.00684 * 166.34373 * 7 6 4 10 10 N 1.31411 * 119.99589 * 1.58911 * 9 7 6 11 11 Si 1.86793 * 120.00617 * 181.59315 * 9 7 6 12 12 H 1.48499 * 109.47228 * 89.99574 * 11 9 7 13 13 H 1.48501 * 109.47404 * 209.99764 * 11 9 7 14 14 H 1.48504 * 109.46966 * 329.99713 * 11 9 7 15 15 C 1.46506 * 120.00344 * 5.18946 * 6 4 3 16 16 C 1.50702 * 109.47072 * 264.82864 * 15 6 4 17 17 O 1.20829 * 120.00210 * 359.97438 * 16 15 6 18 18 O 1.34230 * 119.99918 * 179.97438 * 16 15 6 19 19 C 1.41351 * 107.16132 * 180.24115 * 3 2 1 20 20 N 1.30485 * 108.07267 * 359.76227 * 19 3 2 21 21 N 1.34538 * 126.31633 * 179.82878 * 2 1 3 22 22 C 1.40206 * 125.76857 * 0.02562 * 21 2 1 23 23 C 1.38814 * 120.07806 * 311.68626 * 22 21 2 24 24 C 1.38128 * 119.95496 * 179.97438 * 23 22 21 25 25 C 1.38290 * 120.11820 * 0.02562 * 24 23 22 26 26 C 1.38241 * 120.15437 * 359.97438 * 25 24 23 27 27 C 1.38332 * 120.04239 * 0.02562 * 26 25 24 28 28 F 1.35105 * 120.05539 * 180.02562 * 27 26 25 29 29 H 1.09003 * 109.46846 * 275.03046 * 1 2 3 30 30 H 1.08994 * 109.47314 * 35.03465 * 1 2 3 31 31 H 1.09001 * 109.47034 * 155.03705 * 1 2 3 32 32 H 0.97002 * 120.00105 * 180.02562 * 10 9 7 33 33 H 1.09006 * 109.46648 * 24.82734 * 15 6 4 34 34 H 1.08996 * 109.47571 * 144.82710 * 15 6 4 35 35 H 0.96694 * 117.00131 * 180.02562 * 18 16 15 36 36 H 1.08005 * 125.96983 * 179.76492 * 19 3 2 37 37 H 1.08002 * 120.01977 * 0.02562 * 23 22 21 38 38 H 1.08002 * 119.93667 * 180.02562 * 24 23 22 39 39 H 1.08003 * 119.91935 * 180.27548 * 25 24 23 40 40 H 1.08004 * 119.98062 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3251 1.1132 0.0000 4 6 1.8877 2.5201 -0.0005 5 8 0.9429 2.8635 0.6841 6 7 2.5347 3.4266 -0.7596 7 6 2.1978 4.7518 -0.6802 8 1 1.2831 5.0479 -0.1880 9 6 3.0327 5.7156 -1.2330 10 7 4.1297 5.3533 -1.8593 11 14 2.5957 7.5257 -1.0858 12 1 3.1913 8.0793 0.1567 13 1 3.1291 8.2609 -2.2606 14 1 1.1191 7.6760 -1.0365 15 6 3.5983 2.9945 -1.6698 16 6 4.9345 3.1486 -0.9900 17 8 4.9924 3.5759 0.1387 18 8 6.0602 2.8111 -1.6385 19 6 3.6604 0.6495 -0.0057 20 7 3.6358 -0.6552 -0.0037 21 7 2.3038 -1.0841 0.0032 22 6 1.8725 -2.4181 0.0067 23 6 0.8981 -2.8319 0.9046 24 6 0.4747 -4.1467 0.9054 25 6 1.0202 -5.0520 0.0136 26 6 1.9910 -4.6450 -0.8825 27 6 2.4198 -3.3298 -0.8891 28 9 3.3681 -2.9317 -1.7651 29 1 -0.3633 0.0901 1.0238 30 1 -0.3633 0.8414 -0.5899 31 1 -0.3633 -0.9317 -0.4337 32 1 4.7127 6.0260 -2.2448 33 1 3.4451 1.9490 -1.9373 34 1 3.5764 3.6071 -2.5711 35 1 6.8932 2.9271 -1.1614 36 1 4.5464 1.2671 -0.0107 37 1 0.4707 -2.1261 1.6014 38 1 -0.2838 -4.4682 1.6038 39 1 0.6836 -6.0782 0.0141 40 1 2.4154 -5.3545 -1.5775 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738258834.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:18 Heat of formation + Delta-G solvation = -58.080399 kcal Electronic energy + Delta-G solvation = -30920.944583 eV Core-core repulsion = 26424.452754 eV Total energy + Delta-G solvation = -4496.491829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.01974 -42.90368 -41.15966 -40.02577 -39.58483 -37.07054 -36.33177 -35.00520 -33.67545 -33.18397 -31.70033 -30.36908 -29.48867 -28.62257 -26.73123 -24.69895 -24.12343 -23.21717 -22.72343 -21.81385 -20.27034 -19.23512 -18.96847 -18.70614 -18.33813 -17.76042 -17.45394 -17.28891 -16.87052 -16.73979 -16.38178 -16.20053 -15.86541 -15.84407 -15.33335 -15.10665 -14.99226 -14.62673 -14.24377 -14.10269 -13.87449 -13.62782 -13.60676 -13.49963 -13.19082 -13.10116 -12.93418 -12.75574 -12.44348 -12.37198 -12.17541 -12.12367 -12.09134 -11.54190 -11.11421 -11.01383 -10.62196 -10.11041 -9.97115 -9.89836 -9.43778 -8.37216 -5.99523 -0.34906 0.06561 0.60117 1.01045 1.10880 1.39554 1.44688 1.54276 1.70946 2.15081 2.21425 2.44131 2.50509 2.97109 3.04287 3.20580 3.41527 3.46116 3.67015 3.83769 3.97197 4.12668 4.19108 4.23684 4.24967 4.34029 4.49154 4.55954 4.75629 4.87088 4.90399 4.94151 4.97110 5.01220 5.13650 5.22042 5.30878 5.41691 5.63716 5.92681 5.97493 5.98887 6.29273 6.38826 7.05321 7.26854 7.43119 7.87447 8.62072 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.019597 B = 0.003329 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.469082 B = 8407.962037 C = 9375.963769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.147 3.853 3 C -0.286 4.286 4 C 0.528 3.472 5 O -0.610 6.610 6 N -0.438 5.438 7 C -0.319 4.319 8 H 0.090 0.910 9 C -0.004 4.004 10 N -0.908 5.908 11 Si 1.002 2.998 12 H -0.285 1.285 13 H -0.267 1.267 14 H -0.264 1.264 15 C 0.149 3.851 16 C 0.506 3.494 17 O -0.557 6.557 18 O -0.519 6.519 19 C 0.078 3.922 20 N -0.302 5.302 21 N -0.316 5.316 22 C 0.073 3.927 23 C -0.096 4.096 24 C -0.098 4.098 25 C -0.068 4.068 26 C -0.138 4.138 27 C 0.083 3.917 28 F -0.146 7.146 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.275 0.725 33 H 0.086 0.914 34 H 0.137 0.863 35 H 0.412 0.588 36 H 0.175 0.825 37 H 0.146 0.854 38 H 0.180 0.820 39 H 0.184 0.816 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.603 -21.937 -0.702 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.018 3.982 3 C -0.300 4.300 4 C 0.318 3.682 5 O -0.496 6.496 6 N -0.155 5.155 7 C -0.446 4.446 8 H 0.108 0.892 9 C -0.202 4.202 10 N -0.550 5.550 11 Si 0.825 3.175 12 H -0.211 1.211 13 H -0.191 1.191 14 H -0.189 1.189 15 C 0.023 3.977 16 C 0.350 3.650 17 O -0.447 6.447 18 O -0.331 6.331 19 C -0.109 4.109 20 N -0.120 5.120 21 N -0.091 5.091 22 C -0.017 4.017 23 C -0.116 4.116 24 C -0.116 4.116 25 C -0.086 4.086 26 C -0.157 4.157 27 C 0.062 3.938 28 F -0.125 7.125 29 H 0.121 0.879 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.155 0.845 35 H 0.271 0.729 36 H 0.192 0.808 37 H 0.164 0.836 38 H 0.197 0.803 39 H 0.201 0.799 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.531 -22.697 -0.449 23.365 hybrid contribution 1.136 2.597 0.225 2.843 sum -4.396 -20.100 -0.224 20.576 Atomic orbital electron populations 1.20649 0.83527 1.04675 1.05241 1.21928 0.96137 0.84659 0.95464 1.20175 0.93316 0.93916 1.22566 1.17351 0.85075 0.84484 0.81309 1.90543 1.31918 1.81495 1.45688 1.43370 1.30230 1.06820 1.35127 1.19838 1.07146 0.81360 1.36305 0.89213 1.26015 0.94578 1.04421 0.95226 1.69618 1.13326 1.35278 1.36785 0.84795 0.78739 0.76224 0.77725 1.21136 1.19105 1.18853 1.21022 0.81533 1.00191 0.94905 1.23565 0.86740 0.71216 0.83500 1.90601 1.87757 1.44102 1.22270 1.84480 1.17780 1.80128 1.50717 1.24082 0.97402 0.91794 0.97634 1.77252 0.96416 1.12474 1.25863 1.45476 1.03767 1.04057 1.55827 1.18020 1.02392 0.80188 1.01137 1.21379 0.95484 0.98909 0.95803 1.21592 1.00205 0.90284 0.99513 1.21701 0.92812 1.02196 0.91883 1.21507 0.99713 0.92006 1.02453 1.18143 0.91038 0.94642 0.90015 1.91508 1.62387 1.91686 1.66915 0.87865 0.90160 0.87879 0.91406 0.89611 0.84540 0.72892 0.80842 0.83590 0.80286 0.79882 0.81636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.31 8.56 71.24 0.61 -1.70 16 2 C 0.15 5.39 6.84 42.12 0.29 5.68 16 3 C -0.29 -12.82 5.06 -20.14 -0.10 -12.92 16 4 C 0.53 27.94 7.31 86.64 0.63 28.57 16 5 O -0.61 -34.98 16.27 -4.12 -0.07 -35.05 16 6 N -0.44 -23.69 2.15 -643.39 -1.39 -25.08 16 7 C -0.32 -18.33 9.36 84.07 0.79 -17.54 16 8 H 0.09 5.38 7.22 -2.91 -0.02 5.36 16 9 C 0.00 -0.22 5.35 84.93 0.45 0.23 16 10 N -0.91 -47.40 7.92 21.67 0.17 -47.23 16 11 Si 1.00 43.50 29.55 68.60 2.03 45.53 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 14 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 15 C 0.15 7.17 4.81 85.63 0.41 7.58 16 16 C 0.51 23.92 3.58 71.24 0.26 24.18 16 17 O -0.56 -30.37 16.44 21.96 0.36 -30.00 16 18 O -0.52 -19.80 13.42 -51.41 -0.69 -20.49 16 19 C 0.08 3.38 9.85 85.66 0.84 4.22 16 20 N -0.30 -12.19 11.96 -56.21 -0.67 -12.86 16 21 N -0.32 -10.98 3.54 -174.29 -0.62 -11.60 16 22 C 0.07 1.93 5.88 38.13 0.22 2.15 16 23 C -0.10 -1.67 8.48 22.38 0.19 -1.48 16 24 C -0.10 -0.88 10.04 22.26 0.22 -0.65 16 25 C -0.07 -0.52 10.04 22.28 0.22 -0.29 16 26 C -0.14 -1.94 10.02 22.29 0.22 -1.71 16 27 C 0.08 2.02 7.28 22.48 0.16 2.18 16 28 F -0.15 -4.55 16.65 44.97 0.75 -3.80 16 29 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.08 2.52 8.08 -2.39 -0.02 2.50 16 31 H 0.10 2.09 7.14 -2.39 -0.02 2.07 16 32 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 33 H 0.09 3.77 5.93 -2.38 -0.01 3.76 16 34 H 0.14 6.78 6.15 -2.39 -0.01 6.77 16 35 H 0.41 11.90 9.10 -74.06 -0.67 11.23 16 36 H 0.17 7.70 4.79 -2.91 -0.01 7.69 16 37 H 0.15 2.38 7.49 -2.91 -0.02 2.36 16 38 H 0.18 0.29 8.06 -2.91 -0.02 0.26 16 39 H 0.18 -0.11 8.06 -2.91 -0.02 -0.14 16 40 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -81.55 348.24 5.77 -75.78 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 0.46 Total: 26.32 kcal Atomic # 6 Polarization: 33.06 SS G_CDS: 5.43 Total: 38.49 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -2.50 Total: -96.77 kcal Atomic # 8 Polarization: -85.14 SS G_CDS: -0.40 Total: -85.54 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.75 Total: -3.80 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -81.55 5.77 -75.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738258834.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.701 kcal (2) G-P(sol) polarization free energy of solvation -81.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds