Wall clock time and date at job start Wed Apr 1 2020 04:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 120.00122 * 2 1 4 4 H 1.48493 * 109.46842 * 264.98167 * 3 2 1 5 5 H 1.48496 * 109.47074 * 24.98258 * 3 2 1 6 6 H 1.48498 * 109.46732 * 144.98453 * 3 2 1 7 7 C 1.38950 * 119.99597 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00210 * 201.39255 * 7 2 1 9 9 N 1.37096 * 119.99958 * 21.39823 * 7 2 1 10 10 C 1.46499 * 120.00604 * 11.50148 * 9 7 2 11 11 C 1.50703 * 109.47393 * 264.67503 * 10 9 7 12 12 O 1.20827 * 119.99695 * 359.97438 * 11 10 9 13 13 O 1.34228 * 120.00093 * 179.97438 * 11 10 9 14 14 C 1.34779 * 119.99755 * 191.51020 * 9 7 2 15 15 O 1.21288 * 120.00442 * 359.97438 * 14 9 7 16 16 C 1.50705 * 119.99810 * 179.97438 * 14 9 7 17 17 C 1.50706 * 109.46984 * 179.97438 * 16 14 9 18 18 C 1.39905 * 125.87609 * 124.71287 * 17 16 14 19 19 C 1.35335 * 107.92803 * 179.82915 * 18 17 16 20 20 N 1.35205 * 107.71588 * 0.43108 * 19 18 17 21 21 C 1.40249 * 126.05665 * 179.70809 * 20 19 18 22 22 C 1.38836 * 120.03720 * 359.72782 * 21 20 19 23 23 C 1.38104 * 119.95687 * 179.74482 * 22 21 20 24 24 C 1.38486 * 120.03806 * 0.52770 * 23 22 21 25 25 F 1.35107 * 119.95471 * 179.74675 * 24 23 22 26 26 C 1.38481 * 120.08400 * 359.72486 * 24 23 22 27 27 C 1.38102 * 120.04267 * 0.02562 * 26 24 23 28 28 N 1.30885 * 125.87707 * 305.02509 * 17 16 14 29 29 H 0.97005 * 119.99665 * 0.02562 * 1 2 3 30 30 H 1.09008 * 109.46595 * 24.67138 * 10 9 7 31 31 H 1.09000 * 109.47379 * 144.66585 * 10 9 7 32 32 H 0.96699 * 116.99988 * 179.97438 * 13 11 10 33 33 H 1.09003 * 109.46954 * 59.99745 * 16 14 9 34 34 H 1.08995 * 109.46780 * 299.99323 * 16 14 9 35 35 H 1.07998 * 126.03282 * 0.02562 * 18 17 16 36 36 H 1.07995 * 126.14088 * 180.15755 * 19 18 17 37 37 H 1.07997 * 120.01808 * 359.97438 * 22 21 20 38 38 H 1.07998 * 119.98281 * 180.22784 * 23 22 21 39 39 H 1.08001 * 119.97908 * 179.97438 * 26 24 23 40 40 H 1.08002 * 120.02098 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.6017 1.9851 -1.3947 5 1 1.3967 2.6809 0.5913 6 1 3.4887 1.4730 0.8034 7 6 2.0088 -1.2034 0.0005 8 1 3.0330 -1.2356 0.3417 9 7 1.3941 -2.3499 -0.4321 10 6 0.1061 -2.2736 -1.1260 11 6 -1.0108 -2.4851 -0.1366 12 8 -0.7569 -2.6801 1.0285 13 8 -2.2877 -2.4568 -0.5497 14 6 1.9747 -3.5474 -0.2190 15 8 3.0412 -3.6107 0.3551 16 6 1.2988 -4.8078 -0.6941 17 6 2.1485 -5.9995 -0.3350 18 6 1.7316 -7.1100 0.4068 19 6 2.7798 -7.9599 0.5093 20 7 3.8274 -7.4010 -0.1374 21 6 5.1099 -7.9543 -0.2639 22 6 5.3953 -9.1856 0.3104 23 6 6.6573 -9.7313 0.1803 24 6 7.6408 -9.0460 -0.5132 25 9 8.8762 -9.5791 -0.6351 26 6 7.3594 -7.8153 -1.0823 27 6 6.0971 -7.2688 -0.9587 28 7 3.4051 -6.1710 -0.6585 29 1 -0.4850 0.8401 -0.0004 30 1 0.0004 -1.2923 -1.5889 31 1 0.0613 -3.0448 -1.8949 32 1 -2.9694 -2.5981 0.1214 33 1 1.1708 -4.7658 -1.7758 34 1 0.3235 -4.8992 -0.2161 35 1 0.7462 -7.2636 0.8213 36 1 2.7808 -8.9113 1.0202 37 1 4.6299 -9.7180 0.8554 38 1 6.8787 -10.6908 0.6238 39 1 8.1278 -7.2822 -1.6224 40 1 5.8782 -6.3087 -1.4023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739078784.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:26 Heat of formation + Delta-G solvation = -38.866090 kcal Electronic energy + Delta-G solvation = -29413.055935 eV Core-core repulsion = 24917.397301 eV Total energy + Delta-G solvation = -4495.658634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.09500 -41.46112 -39.49599 -39.00839 -38.06979 -35.30490 -34.58765 -33.66619 -31.84839 -31.63695 -30.54298 -29.64469 -27.86121 -27.43865 -24.68777 -23.65422 -22.88444 -21.19578 -20.82832 -20.20635 -18.63410 -18.34403 -17.59714 -17.21328 -16.93316 -16.36027 -16.23831 -15.84086 -15.70297 -15.14249 -15.10368 -14.52635 -14.46284 -14.26536 -14.08550 -13.90635 -13.84467 -13.59452 -13.21471 -12.84063 -12.67151 -12.41135 -12.30912 -12.04740 -11.70459 -11.67885 -11.42657 -11.27314 -10.94057 -10.47815 -10.40848 -10.40649 -10.25665 -9.93032 -9.70172 -9.47900 -9.04318 -8.95027 -8.53513 -7.97119 -7.93715 -6.45745 -3.87511 0.56835 0.88981 2.12698 2.41059 2.91040 3.14774 3.24658 3.29964 3.39098 3.39726 3.64878 3.98706 4.04748 4.22843 4.28379 4.47407 4.60946 4.67015 4.75844 4.92512 5.03894 5.08514 5.28198 5.45054 5.55077 5.62631 5.70390 5.76074 5.81026 5.89101 5.91601 5.95513 5.99855 6.21240 6.44254 6.44738 6.65120 6.75286 7.17880 7.44548 7.54197 7.84532 7.95614 8.36464 8.97236 9.08643 9.29402 9.83101 10.62360 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.015395 B = 0.002604 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.317672 B =10751.735562 C =12243.005077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.026 3.974 3 Si 0.930 3.070 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.297 4.297 8 H 0.109 0.891 9 N -0.435 5.435 10 C 0.139 3.861 11 C 0.488 3.512 12 O -0.508 6.508 13 O -0.533 6.533 14 C 0.466 3.534 15 O -0.559 6.559 16 C -0.061 4.061 17 C 0.115 3.885 18 C -0.245 4.245 19 C 0.041 3.959 20 N -0.333 5.333 21 C 0.169 3.831 22 C -0.121 4.121 23 C -0.126 4.126 24 C 0.077 3.923 25 F -0.140 7.140 26 C -0.125 4.125 27 C -0.092 4.092 28 N -0.250 5.250 29 H 0.271 0.729 30 H 0.140 0.860 31 H 0.077 0.923 32 H 0.392 0.608 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.154 0.846 36 H 0.175 0.825 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.546 -16.684 -4.189 17.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.175 4.175 3 Si 0.757 3.243 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.424 4.424 8 H 0.127 0.873 9 N -0.155 5.155 10 C 0.013 3.987 11 C 0.329 3.671 12 O -0.394 6.394 13 O -0.344 6.344 14 C 0.253 3.747 15 O -0.440 6.440 16 C -0.103 4.103 17 C -0.054 4.054 18 C -0.273 4.273 19 C -0.100 4.100 20 N -0.109 5.109 21 C 0.075 3.925 22 C -0.142 4.142 23 C -0.145 4.145 24 C 0.058 3.942 25 F -0.118 7.118 26 C -0.145 4.145 27 C -0.112 4.112 28 N -0.068 5.068 29 H 0.081 0.919 30 H 0.157 0.843 31 H 0.094 0.906 32 H 0.248 0.752 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.171 0.829 36 H 0.192 0.808 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.162 0.838 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.449 -16.114 -4.446 17.298 hybrid contribution -0.967 0.424 1.171 1.576 sum 3.482 -15.689 -3.276 16.401 Atomic orbital electron populations 1.69817 1.05978 1.27917 1.49163 1.25185 0.95381 0.99871 0.97069 0.85866 0.79357 0.80544 0.78541 1.20204 1.21141 1.19487 1.19757 0.97942 0.83227 1.41520 0.87325 1.43451 1.16067 1.05558 1.50431 1.20916 0.80961 1.05580 0.91291 1.23994 0.82361 0.70783 0.89958 1.90626 1.83911 1.45152 1.19725 1.84537 1.17963 1.85722 1.46129 1.19665 0.87618 0.83551 0.83850 1.90579 1.23042 1.85863 1.44526 1.20160 0.97732 0.89868 1.02578 1.21882 0.91653 0.95395 0.96471 1.21511 1.01023 0.95786 1.08995 1.22461 0.87376 1.00351 0.99777 1.45873 1.07400 1.15568 1.42015 1.17580 0.82778 0.93120 0.99031 1.20617 0.97506 0.94266 1.01794 1.20872 0.92009 1.01086 1.00539 1.17681 0.80668 0.93987 1.01906 1.91502 1.39831 1.86031 1.94482 1.21066 0.97686 0.94573 1.01135 1.20867 0.90882 1.00995 0.98453 1.77614 1.12716 0.95520 1.20976 0.91861 0.84280 0.90555 0.75183 0.88252 0.88278 0.82882 0.80800 0.84303 0.83935 0.83830 0.83095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.78 9.27 55.50 0.51 -22.27 16 2 C 0.03 0.68 4.95 -17.47 -0.09 0.59 16 3 Si 0.93 20.49 29.60 -169.99 -5.03 15.46 16 4 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.12 9.42 -14.93 -0.14 -8.26 16 8 H 0.11 3.16 7.31 -52.49 -0.38 2.77 16 9 N -0.43 -10.77 2.17 -116.09 -0.25 -11.02 16 10 C 0.14 2.91 4.98 -5.19 -0.03 2.89 16 11 C 0.49 10.36 6.05 36.01 0.22 10.58 16 12 O -0.51 -12.78 17.03 -18.75 -0.32 -13.10 16 13 O -0.53 -9.04 13.42 -39.25 -0.53 -9.57 16 14 C 0.47 11.26 7.43 -10.98 -0.08 11.18 16 15 O -0.56 -15.64 15.17 5.55 0.08 -15.55 16 16 C -0.06 -1.13 4.89 -29.03 -0.14 -1.27 16 17 C 0.12 2.11 6.02 -82.37 -0.50 1.61 16 18 C -0.24 -3.64 10.72 -39.99 -0.43 -4.07 16 19 C 0.04 0.54 10.80 -17.10 -0.18 0.35 16 20 N -0.33 -5.21 3.80 -10.69 -0.04 -5.25 16 21 C 0.17 2.24 6.69 -83.57 -0.56 1.68 16 22 C -0.12 -1.19 9.45 -39.41 -0.37 -1.57 16 23 C -0.13 -1.14 10.02 -39.54 -0.40 -1.53 16 24 C 0.08 0.81 7.30 -39.40 -0.29 0.52 16 25 F -0.14 -1.50 17.27 2.25 0.04 -1.46 16 26 C -0.13 -1.35 10.02 -39.54 -0.40 -1.75 16 27 C -0.09 -1.20 9.66 -39.41 -0.38 -1.58 16 28 N -0.25 -4.80 11.22 33.69 0.38 -4.42 16 29 H 0.27 6.66 8.31 -40.82 -0.34 6.33 16 30 H 0.14 3.08 6.01 -51.92 -0.31 2.76 16 31 H 0.08 1.26 6.66 -51.93 -0.35 0.91 16 32 H 0.39 5.01 9.10 45.56 0.41 5.43 16 33 H 0.10 1.53 7.41 -51.93 -0.38 1.15 16 34 H 0.10 1.69 7.54 -51.93 -0.39 1.30 16 35 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 36 H 0.17 1.45 7.04 -52.49 -0.37 1.08 16 37 H 0.14 1.00 6.74 -52.49 -0.35 0.64 16 38 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 40 H 0.15 2.16 7.70 -52.49 -0.40 1.76 16 LS Contribution 356.67 15.07 5.37 5.37 Total: -1.00 -36.09 356.67 -6.47 -42.57 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -2.93 Total: 9.86 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: -3.76 Total: 9.37 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.60 Total: -42.95 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -0.76 Total: -38.22 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.09 -6.47 -42.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078784.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.703 kcal (2) G-P(sol) polarization free energy of solvation -36.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds