Wall clock time and date at job start Wed Apr 1 2020 04:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 120.00122 * 2 1 4 4 H 1.48493 * 109.46842 * 264.98167 * 3 2 1 5 5 H 1.48496 * 109.47074 * 24.98258 * 3 2 1 6 6 H 1.48498 * 109.46732 * 144.98453 * 3 2 1 7 7 C 1.38950 * 119.99597 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00210 * 201.39255 * 7 2 1 9 9 N 1.37096 * 119.99958 * 21.39823 * 7 2 1 10 10 C 1.46499 * 120.00604 * 11.50148 * 9 7 2 11 11 C 1.50703 * 109.47393 * 264.67503 * 10 9 7 12 12 O 1.20827 * 119.99695 * 359.97438 * 11 10 9 13 13 O 1.34228 * 120.00093 * 179.97438 * 11 10 9 14 14 C 1.34779 * 119.99755 * 191.51020 * 9 7 2 15 15 O 1.21288 * 120.00442 * 359.97438 * 14 9 7 16 16 C 1.50705 * 119.99810 * 179.97438 * 14 9 7 17 17 C 1.50706 * 109.46984 * 179.97438 * 16 14 9 18 18 C 1.39905 * 125.87609 * 124.71287 * 17 16 14 19 19 C 1.35335 * 107.92803 * 179.82915 * 18 17 16 20 20 N 1.35205 * 107.71588 * 0.43108 * 19 18 17 21 21 C 1.40249 * 126.05665 * 179.70809 * 20 19 18 22 22 C 1.38836 * 120.03720 * 359.72782 * 21 20 19 23 23 C 1.38104 * 119.95687 * 179.74482 * 22 21 20 24 24 C 1.38486 * 120.03806 * 0.52770 * 23 22 21 25 25 F 1.35107 * 119.95471 * 179.74675 * 24 23 22 26 26 C 1.38481 * 120.08400 * 359.72486 * 24 23 22 27 27 C 1.38102 * 120.04267 * 0.02562 * 26 24 23 28 28 N 1.30885 * 125.87707 * 305.02509 * 17 16 14 29 29 H 0.97005 * 119.99665 * 0.02562 * 1 2 3 30 30 H 1.09008 * 109.46595 * 24.67138 * 10 9 7 31 31 H 1.09000 * 109.47379 * 144.66585 * 10 9 7 32 32 H 0.96699 * 116.99988 * 179.97438 * 13 11 10 33 33 H 1.09003 * 109.46954 * 59.99745 * 16 14 9 34 34 H 1.08995 * 109.46780 * 299.99323 * 16 14 9 35 35 H 1.07998 * 126.03282 * 0.02562 * 18 17 16 36 36 H 1.07995 * 126.14088 * 180.15755 * 19 18 17 37 37 H 1.07997 * 120.01808 * 359.97438 * 22 21 20 38 38 H 1.07998 * 119.98281 * 180.22784 * 23 22 21 39 39 H 1.08001 * 119.97908 * 179.97438 * 26 24 23 40 40 H 1.08002 * 120.02098 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.6017 1.9851 -1.3947 5 1 1.3967 2.6809 0.5913 6 1 3.4887 1.4730 0.8034 7 6 2.0088 -1.2034 0.0005 8 1 3.0330 -1.2356 0.3417 9 7 1.3941 -2.3499 -0.4321 10 6 0.1061 -2.2736 -1.1260 11 6 -1.0108 -2.4851 -0.1366 12 8 -0.7569 -2.6801 1.0285 13 8 -2.2877 -2.4568 -0.5497 14 6 1.9747 -3.5474 -0.2190 15 8 3.0412 -3.6107 0.3551 16 6 1.2988 -4.8078 -0.6941 17 6 2.1485 -5.9995 -0.3350 18 6 1.7316 -7.1100 0.4068 19 6 2.7798 -7.9599 0.5093 20 7 3.8274 -7.4010 -0.1374 21 6 5.1099 -7.9543 -0.2639 22 6 5.3953 -9.1856 0.3104 23 6 6.6573 -9.7313 0.1803 24 6 7.6408 -9.0460 -0.5132 25 9 8.8762 -9.5791 -0.6351 26 6 7.3594 -7.8153 -1.0823 27 6 6.0971 -7.2688 -0.9587 28 7 3.4051 -6.1710 -0.6585 29 1 -0.4850 0.8401 -0.0004 30 1 0.0004 -1.2923 -1.5889 31 1 0.0613 -3.0448 -1.8949 32 1 -2.9694 -2.5981 0.1214 33 1 1.1708 -4.7658 -1.7758 34 1 0.3235 -4.8992 -0.2161 35 1 0.7462 -7.2636 0.8213 36 1 2.7808 -8.9113 1.0202 37 1 4.6299 -9.7180 0.8554 38 1 6.8787 -10.6908 0.6238 39 1 8.1278 -7.2822 -1.6224 40 1 5.8782 -6.3087 -1.4023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739078784.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:25 Heat of formation + Delta-G solvation = -62.751100 kcal Electronic energy + Delta-G solvation = -29414.091667 eV Core-core repulsion = 24917.397301 eV Total energy + Delta-G solvation = -4496.694366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.93556 -42.57426 -41.18375 -40.06954 -39.68300 -37.01492 -36.35946 -34.85967 -33.75994 -32.48596 -31.75927 -30.82199 -29.50218 -28.74027 -26.52385 -24.52086 -23.93639 -22.82563 -21.89532 -21.58191 -20.10297 -19.33057 -18.99934 -18.67516 -18.50017 -18.04983 -17.35197 -17.17677 -16.73742 -16.56692 -16.22310 -16.16273 -16.00479 -15.72458 -15.56520 -14.94669 -14.87711 -14.65565 -14.29759 -14.18202 -13.85323 -13.74711 -13.65071 -13.46011 -13.38073 -13.34854 -12.95928 -12.62178 -12.33898 -12.19910 -12.15329 -12.10102 -11.55389 -11.52763 -11.03816 -10.91498 -10.42219 -10.29279 -10.05549 -9.88594 -8.97568 -8.42807 -5.91788 -0.34926 0.07381 1.09649 1.36405 1.39497 1.42208 1.52819 1.69263 1.72456 1.93165 2.26642 2.51742 2.55494 2.96286 3.15929 3.16775 3.31737 3.65005 3.69362 3.82259 3.97506 4.00042 4.13456 4.25789 4.32453 4.46454 4.53711 4.69662 4.75698 4.81126 4.85552 4.92944 4.97453 5.01268 5.02123 5.20418 5.46391 5.54245 5.66323 5.98233 6.00855 6.21647 6.41146 6.68272 7.12425 7.31920 7.47930 7.95463 8.62688 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.015395 B = 0.002604 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.317672 B =10751.735562 C =12243.005077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.001 3.999 3 Si 0.989 3.011 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.284 1.284 7 C -0.337 4.337 8 H 0.074 0.926 9 N -0.446 5.446 10 C 0.134 3.866 11 C 0.498 3.502 12 O -0.553 6.553 13 O -0.515 6.515 14 C 0.454 3.546 15 O -0.611 6.611 16 C -0.048 4.048 17 C 0.086 3.914 18 C -0.264 4.264 19 C 0.057 3.943 20 N -0.337 5.337 21 C 0.136 3.864 22 C -0.105 4.105 23 C -0.112 4.112 24 C 0.075 3.925 25 F -0.140 7.140 26 C -0.128 4.128 27 C -0.114 4.114 28 N -0.303 5.303 29 H 0.276 0.724 30 H 0.129 0.871 31 H 0.123 0.877 32 H 0.414 0.586 33 H 0.127 0.873 34 H 0.114 0.886 35 H 0.178 0.822 36 H 0.228 0.772 37 H 0.175 0.825 38 H 0.180 0.820 39 H 0.155 0.845 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.534 -18.974 -4.167 19.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.200 4.200 3 Si 0.813 3.187 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.209 1.209 7 C -0.464 4.464 8 H 0.092 0.908 9 N -0.166 5.166 10 C 0.009 3.991 11 C 0.341 3.659 12 O -0.443 6.443 13 O -0.327 6.327 14 C 0.243 3.757 15 O -0.496 6.496 16 C -0.090 4.090 17 C -0.082 4.082 18 C -0.291 4.291 19 C -0.084 4.084 20 N -0.113 5.113 21 C 0.044 3.956 22 C -0.126 4.126 23 C -0.131 4.131 24 C 0.055 3.945 25 F -0.119 7.119 26 C -0.147 4.147 27 C -0.134 4.134 28 N -0.122 5.122 29 H 0.086 0.914 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.274 0.726 33 H 0.145 0.855 34 H 0.132 0.868 35 H 0.195 0.805 36 H 0.245 0.755 37 H 0.193 0.807 38 H 0.197 0.803 39 H 0.173 0.827 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.371 -18.400 -4.469 19.233 hybrid contribution -0.619 1.069 1.162 1.696 sum 2.752 -17.331 -3.308 17.857 Atomic orbital electron populations 1.69888 1.06498 1.28765 1.48129 1.25839 0.96233 1.01946 0.95951 0.85015 0.77658 0.76983 0.79026 1.18531 1.20143 1.20910 1.19574 0.97317 0.85408 1.44113 0.90847 1.43588 1.17365 1.05190 1.50430 1.21070 0.79524 1.06661 0.91838 1.23866 0.83463 0.69585 0.88995 1.90620 1.84811 1.47406 1.21459 1.84458 1.16919 1.84802 1.46555 1.20643 0.87088 0.84998 0.82930 1.90530 1.25372 1.86873 1.46846 1.20064 0.97622 0.87096 1.04176 1.22051 0.91848 0.96329 0.97951 1.21850 1.02831 0.95161 1.09305 1.23286 0.85723 1.01435 0.97962 1.46045 1.08652 1.14744 1.41836 1.18013 0.82094 0.94747 1.00774 1.20983 0.98596 0.92554 1.00419 1.21271 0.90926 1.01928 0.99009 1.17843 0.81015 0.93793 1.01851 1.91506 1.39986 1.85914 1.94486 1.21139 0.97078 0.95164 1.01307 1.20756 0.92267 1.00567 0.99812 1.77504 1.13601 0.98041 1.23103 0.91410 0.85369 0.85902 0.72606 0.85529 0.86783 0.80503 0.75543 0.80728 0.80314 0.82733 0.85909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.72 9.27 21.66 0.20 -45.52 16 2 C 0.00 0.07 4.95 84.93 0.42 0.49 16 3 Si 0.99 42.63 29.60 68.60 2.03 44.66 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.34 -19.26 9.42 84.04 0.79 -18.47 16 8 H 0.07 4.61 7.31 -2.91 -0.02 4.59 16 9 N -0.45 -22.81 2.17 -639.58 -1.39 -24.20 16 10 C 0.13 5.58 4.98 85.63 0.43 6.01 16 11 C 0.50 20.68 6.05 71.24 0.43 21.11 16 12 O -0.55 -27.88 17.03 21.96 0.37 -27.51 16 13 O -0.52 -16.28 13.42 -51.40 -0.69 -16.97 16 14 C 0.45 22.90 7.43 87.66 0.65 23.56 16 15 O -0.61 -36.53 15.17 -3.05 -0.05 -36.58 16 16 C -0.05 -1.79 4.89 29.11 0.14 -1.64 16 17 C 0.09 3.20 6.02 43.11 0.26 3.46 16 18 C -0.26 -7.51 10.72 22.00 0.24 -7.28 16 19 C 0.06 1.36 10.80 83.50 0.90 2.26 16 20 N -0.34 -10.44 3.80 -187.73 -0.71 -11.15 16 21 C 0.14 3.54 6.69 38.08 0.25 3.80 16 22 C -0.11 -1.74 9.45 22.38 0.21 -1.53 16 23 C -0.11 -1.64 10.02 22.30 0.22 -1.41 16 24 C 0.07 1.42 7.30 22.39 0.16 1.59 16 25 F -0.14 -2.74 17.27 44.97 0.78 -1.96 16 26 C -0.13 -2.78 10.02 22.30 0.22 -2.55 16 27 C -0.11 -3.12 9.66 22.38 0.22 -2.90 16 28 N -0.30 -12.11 11.22 -47.34 -0.53 -12.64 16 29 H 0.28 13.33 8.31 -92.70 -0.77 12.56 16 30 H 0.13 5.63 6.01 -2.38 -0.01 5.61 16 31 H 0.12 3.84 6.66 -2.39 -0.02 3.83 16 32 H 0.41 9.49 9.10 -74.06 -0.67 8.82 16 33 H 0.13 3.84 7.41 -2.39 -0.02 3.82 16 34 H 0.11 3.82 7.54 -2.39 -0.02 3.80 16 35 H 0.18 3.92 8.06 -2.91 -0.02 3.90 16 36 H 0.23 2.63 7.04 -2.91 -0.02 2.61 16 37 H 0.18 1.56 6.74 -2.91 -0.02 1.54 16 38 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 39 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 40 H 0.12 3.98 7.70 -2.91 -0.02 3.96 16 Total: -1.00 -84.86 356.67 6.02 -78.84 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.46 Total: 26.55 kcal Atomic # 6 Polarization: 20.93 SS G_CDS: 5.55 Total: 26.48 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -2.43 Total: -93.51 kcal Atomic # 8 Polarization: -80.69 SS G_CDS: -0.36 Total: -81.05 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -84.86 6.02 -78.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078784.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.087 kcal (2) G-P(sol) polarization free energy of solvation -84.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds