Wall clock time and date at job start Wed Apr 1 2020 04:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99611 * 2 1 4 4 H 1.48501 * 109.46948 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47378 * 300.00515 * 3 2 1 6 6 H 1.48501 * 109.47174 * 60.00430 * 3 2 1 7 7 C 1.38948 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00263 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 O 1.45206 * 109.47021 * 180.02562 * 12 10 9 14 14 C 1.34224 * 117.00077 * 180.02562 * 13 12 10 15 15 O 1.20833 * 120.00103 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00302 * 180.02562 * 14 13 12 17 17 C 1.50703 * 109.47225 * 180.02562 * 16 14 13 18 18 C 1.39912 * 125.87848 * 124.71699 * 17 16 14 19 19 C 1.35336 * 107.92463 * 179.82521 * 18 17 16 20 20 N 1.35204 * 107.71875 * 0.42475 * 19 18 17 21 21 C 1.40244 * 126.05517 * 179.70536 * 20 19 18 22 22 C 1.38837 * 120.03693 * 359.73286 * 21 20 19 23 23 C 1.38110 * 119.95412 * 179.74009 * 22 21 20 24 24 C 1.38479 * 120.04031 * 0.53154 * 23 22 21 25 25 F 1.35104 * 119.95899 * 179.74353 * 24 23 22 26 26 C 1.38482 * 120.08651 * 359.72311 * 24 23 22 27 27 C 1.38111 * 120.04067 * 0.02562 * 26 24 23 28 28 N 1.30884 * 125.87804 * 305.01701 * 17 16 14 29 29 H 0.97002 * 120.00294 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 32 32 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 33 33 H 1.09009 * 109.46972 * 299.99362 * 16 14 13 34 34 H 1.08995 * 109.47473 * 59.99636 * 16 14 13 35 35 H 1.07997 * 126.03684 * 359.97438 * 18 17 16 36 36 H 1.08001 * 126.13673 * 180.15558 * 19 18 17 37 37 H 1.07993 * 120.02113 * 359.97338 * 22 21 20 38 38 H 1.07993 * 119.97573 * 180.22627 * 23 22 21 39 39 H 1.07999 * 119.98423 * 180.02562 * 26 24 23 40 40 H 1.07998 * 120.02248 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8891 2.3966 -1.2124 6 1 1.8893 2.3965 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 8 2.1876 -5.9665 -0.0027 14 6 1.6747 -7.2069 -0.0037 15 8 0.4768 -7.3653 -0.0038 16 6 2.5927 -8.4019 -0.0037 17 6 1.7720 -9.6659 -0.0057 18 6 1.8679 -10.7044 -0.9383 19 6 0.9699 -11.6569 -0.5950 20 7 0.3209 -11.2306 0.5119 21 6 -0.6953 -11.9197 1.1897 22 6 -1.1231 -13.1572 0.7282 23 6 -2.1202 -13.8367 1.4001 24 6 -2.7008 -13.2794 2.5271 25 9 -3.6796 -13.9433 3.1801 26 6 -2.2790 -12.0428 2.9859 27 6 -1.2785 -11.3626 2.3197 28 7 0.8429 -9.9785 0.8615 29 1 -0.4851 0.8400 0.0004 30 1 0.3535 -2.3906 -0.0005 31 1 0.6170 -4.9201 -0.8920 32 1 0.6177 -4.9213 0.8880 33 1 3.2222 -8.3766 -0.8934 34 1 3.2209 -8.3776 0.8866 35 1 2.5416 -10.7408 -1.7817 36 1 0.7990 -12.5880 -1.1147 37 1 -0.6739 -13.5898 -0.1534 38 1 -2.4507 -14.8010 1.0435 39 1 -2.7326 -11.6099 3.8652 40 1 -0.9496 -10.3983 2.6780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745419370.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:30 Heat of formation + Delta-G solvation = -52.014608 kcal Electronic energy + Delta-G solvation = -27755.482840 eV Core-core repulsion = 23259.254043 eV Total energy + Delta-G solvation = -4496.228797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.32824 -41.96721 -40.22704 -39.29960 -38.11057 -36.11035 -34.26285 -33.98731 -31.93935 -31.45691 -31.29486 -30.24906 -28.69810 -27.65486 -24.64618 -23.98840 -23.41117 -21.58268 -21.16970 -19.76131 -19.54421 -18.77672 -18.05629 -17.90752 -17.51984 -16.63634 -16.45766 -16.29586 -16.09100 -15.63637 -15.42944 -15.17250 -14.55995 -14.45333 -14.33208 -14.18357 -14.12431 -13.86378 -13.61179 -13.21731 -13.10591 -12.99142 -12.75009 -12.60713 -12.04175 -11.93817 -11.63387 -11.61436 -11.14410 -10.95240 -10.47537 -10.38265 -10.37420 -10.32036 -10.23934 -9.75309 -9.60619 -9.42983 -8.50785 -8.36545 -8.07251 -6.49037 -3.91039 0.23666 0.61372 1.68723 1.93654 2.23611 2.36573 2.90524 3.09132 3.12519 3.24588 3.32242 3.72534 3.75250 3.89047 4.12327 4.15983 4.20412 4.35285 4.53531 4.65071 4.69697 4.88522 5.04826 5.12759 5.16025 5.18329 5.27646 5.32962 5.34443 5.49541 5.52984 5.60267 5.63347 5.72438 5.76526 6.06966 6.13340 6.24159 6.67190 6.74231 7.29695 7.48904 7.88079 7.98880 8.49740 9.08225 9.40717 9.90571 10.68282 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018646 B = 0.001689 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.326248 B =16572.897393 C =17790.222737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.302 4.302 8 H 0.107 0.893 9 N -0.554 5.554 10 C 0.439 3.561 11 O -0.576 6.576 12 C 0.062 3.938 13 O -0.326 6.326 14 C 0.459 3.541 15 O -0.500 6.500 16 C -0.031 4.031 17 C 0.091 3.909 18 C -0.243 4.243 19 C 0.049 3.951 20 N -0.324 5.324 21 C 0.158 3.842 22 C -0.115 4.115 23 C -0.126 4.126 24 C 0.086 3.914 25 F -0.137 7.137 26 C -0.126 4.126 27 C -0.089 4.089 28 N -0.254 5.254 29 H 0.273 0.727 30 H 0.395 0.605 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.159 0.841 36 H 0.180 0.820 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.954 -29.401 0.598 29.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.125 0.875 9 N -0.191 5.191 10 C 0.224 3.776 11 O -0.460 6.460 12 C -0.015 4.015 13 O -0.240 6.240 14 C 0.300 3.700 15 O -0.387 6.387 16 C -0.071 4.071 17 C -0.077 4.077 18 C -0.271 4.271 19 C -0.092 4.092 20 N -0.100 5.100 21 C 0.065 3.935 22 C -0.136 4.136 23 C -0.145 4.145 24 C 0.066 3.934 25 F -0.115 7.115 26 C -0.145 4.145 27 C -0.109 4.109 28 N -0.073 5.073 29 H 0.083 0.917 30 H 0.228 0.772 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.177 0.823 36 H 0.197 0.803 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.346 -28.947 1.677 29.188 hybrid contribution -0.267 0.470 -0.699 0.884 sum -3.613 -28.477 0.978 28.722 Atomic orbital electron populations 1.69622 1.06008 1.28361 1.49801 1.25318 0.95689 0.99883 0.96947 0.85739 0.79711 0.80753 0.77781 1.19075 1.20646 1.20643 1.19782 0.93516 0.81751 1.48028 0.87530 1.41716 1.09377 1.04113 1.63881 1.19336 0.88336 0.84088 0.85866 1.90560 1.13399 1.86814 1.55215 1.22729 0.90816 0.84495 1.03476 1.86526 1.40302 1.14061 1.83144 1.23298 0.88622 0.84787 0.73323 1.90705 1.16637 1.86661 1.44706 1.19636 0.95557 0.84084 1.07782 1.21748 0.95661 0.96100 0.94210 1.21474 1.06141 0.95092 1.04406 1.22576 0.95275 1.01049 0.90304 1.45791 1.28109 1.14700 1.21351 1.17566 0.90006 0.91935 0.94013 1.20628 0.98520 0.93120 1.01326 1.20920 0.97276 1.01358 0.94976 1.17718 0.89859 0.92225 0.93633 1.91523 1.59692 1.80094 1.80221 1.21104 0.98082 0.93719 1.01630 1.20842 0.95414 1.01095 0.93572 1.77548 1.12415 0.94110 1.23222 0.91694 0.77170 0.89602 0.89577 0.85156 0.85509 0.82320 0.80342 0.84151 0.83681 0.83620 0.83199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.19 13.05 55.50 0.72 -23.47 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.74 29.55 -169.99 -5.02 15.71 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 8 H 0.11 3.07 7.16 -52.48 -0.38 2.70 16 9 N -0.55 -14.07 5.29 -10.96 -0.06 -14.13 16 10 C 0.44 10.62 7.86 -10.99 -0.09 10.53 16 11 O -0.58 -15.96 16.08 -14.12 -0.23 -16.19 16 12 C 0.06 1.20 5.94 36.01 0.21 1.41 16 13 O -0.33 -5.96 9.75 -45.89 -0.45 -6.41 16 14 C 0.46 7.15 7.95 36.00 0.29 7.44 16 15 O -0.50 -9.08 15.31 -18.76 -0.29 -9.37 16 16 C -0.03 -0.34 6.39 -29.04 -0.19 -0.52 16 17 C 0.09 1.07 6.02 -82.37 -0.50 0.57 16 18 C -0.24 -2.17 10.72 -39.99 -0.43 -2.60 16 19 C 0.05 0.41 10.80 -17.10 -0.18 0.22 16 20 N -0.32 -3.55 3.80 -10.69 -0.04 -3.59 16 21 C 0.16 1.50 6.69 -83.57 -0.56 0.94 16 22 C -0.12 -0.76 9.45 -39.41 -0.37 -1.13 16 23 C -0.13 -0.79 10.02 -39.54 -0.40 -1.19 16 24 C 0.09 0.67 7.30 -39.40 -0.29 0.38 16 25 F -0.14 -1.17 17.27 2.25 0.04 -1.14 16 26 C -0.13 -1.01 10.02 -39.54 -0.40 -1.40 16 27 C -0.09 -0.85 9.66 -39.41 -0.38 -1.23 16 28 N -0.25 -3.44 11.22 33.69 0.38 -3.06 16 29 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.39 9.55 7.90 -40.82 -0.32 9.22 16 31 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 32 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 33 H 0.13 1.00 8.12 -51.92 -0.42 0.57 16 34 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.18 0.71 7.04 -52.49 -0.37 0.34 16 37 H 0.14 0.53 6.74 -52.49 -0.35 0.18 16 38 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 39 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.15 1.57 7.70 -52.49 -0.40 1.17 16 LS Contribution 368.18 15.07 5.55 5.55 Total: -1.00 -35.93 368.18 -6.83 -42.75 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -3.92 Total: 7.87 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -3.51 Total: 5.47 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 1.00 Total: -44.25 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.96 Total: -31.97 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.93 -6.83 -42.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745419370.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.261 kcal (2) G-P(sol) polarization free energy of solvation -35.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds