Wall clock time and date at job start Wed Apr 1 2020 04:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99611 * 2 1 4 4 H 1.48501 * 109.46948 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47378 * 300.00515 * 3 2 1 6 6 H 1.48501 * 109.47174 * 60.00430 * 3 2 1 7 7 C 1.38948 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00263 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 O 1.45206 * 109.47021 * 180.02562 * 12 10 9 14 14 C 1.34224 * 117.00077 * 180.02562 * 13 12 10 15 15 O 1.20833 * 120.00103 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00302 * 180.02562 * 14 13 12 17 17 C 1.50703 * 109.47225 * 180.02562 * 16 14 13 18 18 C 1.39912 * 125.87848 * 124.71699 * 17 16 14 19 19 C 1.35336 * 107.92463 * 179.82521 * 18 17 16 20 20 N 1.35204 * 107.71875 * 0.42475 * 19 18 17 21 21 C 1.40244 * 126.05517 * 179.70536 * 20 19 18 22 22 C 1.38837 * 120.03693 * 359.73286 * 21 20 19 23 23 C 1.38110 * 119.95412 * 179.74009 * 22 21 20 24 24 C 1.38479 * 120.04031 * 0.53154 * 23 22 21 25 25 F 1.35104 * 119.95899 * 179.74353 * 24 23 22 26 26 C 1.38482 * 120.08651 * 359.72311 * 24 23 22 27 27 C 1.38111 * 120.04067 * 0.02562 * 26 24 23 28 28 N 1.30884 * 125.87804 * 305.01701 * 17 16 14 29 29 H 0.97002 * 120.00294 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 32 32 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 33 33 H 1.09009 * 109.46972 * 299.99362 * 16 14 13 34 34 H 1.08995 * 109.47473 * 59.99636 * 16 14 13 35 35 H 1.07997 * 126.03684 * 359.97438 * 18 17 16 36 36 H 1.08001 * 126.13673 * 180.15558 * 19 18 17 37 37 H 1.07993 * 120.02113 * 359.97338 * 22 21 20 38 38 H 1.07993 * 119.97573 * 180.22627 * 23 22 21 39 39 H 1.07999 * 119.98423 * 180.02562 * 26 24 23 40 40 H 1.07998 * 120.02248 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8891 2.3966 -1.2124 6 1 1.8893 2.3965 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 8 2.1876 -5.9665 -0.0027 14 6 1.6747 -7.2069 -0.0037 15 8 0.4768 -7.3653 -0.0038 16 6 2.5927 -8.4019 -0.0037 17 6 1.7720 -9.6659 -0.0057 18 6 1.8679 -10.7044 -0.9383 19 6 0.9699 -11.6569 -0.5950 20 7 0.3209 -11.2306 0.5119 21 6 -0.6953 -11.9197 1.1897 22 6 -1.1231 -13.1572 0.7282 23 6 -2.1202 -13.8367 1.4001 24 6 -2.7008 -13.2794 2.5271 25 9 -3.6796 -13.9433 3.1801 26 6 -2.2790 -12.0428 2.9859 27 6 -1.2785 -11.3626 2.3197 28 7 0.8429 -9.9785 0.8615 29 1 -0.4851 0.8400 0.0004 30 1 0.3535 -2.3906 -0.0005 31 1 0.6170 -4.9201 -0.8920 32 1 0.6177 -4.9213 0.8880 33 1 3.2222 -8.3766 -0.8934 34 1 3.2209 -8.3776 0.8866 35 1 2.5416 -10.7408 -1.7817 36 1 0.7990 -12.5880 -1.1147 37 1 -0.6739 -13.5898 -0.1534 38 1 -2.4507 -14.8010 1.0435 39 1 -2.7326 -11.6099 3.8652 40 1 -0.9496 -10.3983 2.6780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745419370.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:29 Heat of formation + Delta-G solvation = -74.114661 kcal Electronic energy + Delta-G solvation = -27756.441170 eV Core-core repulsion = 23259.254043 eV Total energy + Delta-G solvation = -4497.187127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.95816 -42.68027 -41.55036 -40.08818 -39.85063 -37.53348 -36.03536 -35.02284 -33.42683 -32.51473 -32.17982 -30.99278 -30.04770 -28.66592 -26.57339 -24.57034 -24.18371 -22.64082 -21.84179 -21.42863 -20.63111 -20.07648 -19.38882 -18.84172 -18.51606 -17.88792 -17.81647 -17.21808 -17.17465 -16.72789 -16.46575 -16.21534 -15.95224 -15.82283 -15.67430 -15.04812 -14.90861 -14.68900 -14.59371 -14.45079 -14.07936 -13.80341 -13.70701 -13.59287 -13.55869 -13.40961 -13.09371 -12.93610 -12.46952 -12.21868 -12.10536 -11.85901 -11.75580 -11.58802 -11.57683 -11.08685 -10.51595 -10.31360 -10.12611 -10.10965 -9.02853 -8.53019 -6.03831 -0.38840 0.05228 0.95970 1.14271 1.26219 1.34561 1.36196 1.43938 1.58166 1.85485 1.86087 2.30654 2.49032 3.05836 3.12447 3.14437 3.22502 3.54905 3.66782 3.73496 3.82853 3.94462 4.07056 4.12609 4.13784 4.20853 4.25654 4.44148 4.49721 4.65074 4.72196 4.79352 4.92301 4.97194 5.00130 5.14019 5.33360 5.37193 5.51117 5.63771 5.88542 6.14321 6.45060 6.57341 6.67054 7.02155 7.38992 7.92098 8.64304 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018646 B = 0.001689 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.326248 B =16572.897393 C =17790.222737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 1.000 3.000 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.559 5.559 10 C 0.438 3.562 11 O -0.615 6.615 12 C 0.073 3.927 13 O -0.341 6.341 14 C 0.459 3.541 15 O -0.528 6.528 16 C -0.024 4.024 17 C 0.073 3.927 18 C -0.250 4.250 19 C 0.054 3.946 20 N -0.332 5.332 21 C 0.135 3.865 22 C -0.103 4.103 23 C -0.115 4.115 24 C 0.074 3.926 25 F -0.142 7.142 26 C -0.130 4.130 27 C -0.111 4.111 28 N -0.309 5.309 29 H 0.281 0.719 30 H 0.399 0.601 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.166 0.834 34 H 0.144 0.856 35 H 0.189 0.811 36 H 0.225 0.775 37 H 0.177 0.823 38 H 0.176 0.824 39 H 0.153 0.847 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.844 -31.356 -0.792 31.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.823 3.177 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.104 0.896 9 N -0.196 5.196 10 C 0.224 3.776 11 O -0.502 6.502 12 C -0.004 4.004 13 O -0.256 6.256 14 C 0.302 3.698 15 O -0.417 6.417 16 C -0.063 4.063 17 C -0.095 4.095 18 C -0.278 4.278 19 C -0.086 4.086 20 N -0.108 5.108 21 C 0.043 3.957 22 C -0.123 4.123 23 C -0.134 4.134 24 C 0.055 3.945 25 F -0.121 7.121 26 C -0.150 4.150 27 C -0.131 4.131 28 N -0.129 5.129 29 H 0.090 0.910 30 H 0.233 0.767 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.184 0.816 34 H 0.161 0.839 35 H 0.206 0.794 36 H 0.241 0.759 37 H 0.194 0.806 38 H 0.194 0.806 39 H 0.171 0.829 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.263 -30.918 0.292 31.091 hybrid contribution -0.363 0.968 -0.248 1.063 sum -3.626 -29.950 0.044 30.169 Atomic orbital electron populations 1.69683 1.07025 1.29670 1.49309 1.26162 0.96596 1.02698 0.95668 0.84770 0.78107 0.76440 0.78398 1.19412 1.19437 1.19532 1.19787 0.93005 0.83329 1.50521 0.89593 1.41762 1.09536 1.04261 1.64089 1.20082 0.88088 0.85322 0.84066 1.90522 1.15305 1.87684 1.56669 1.22451 0.90236 0.82745 1.04956 1.86539 1.40487 1.14881 1.83687 1.24260 0.89085 0.84591 0.71814 1.90692 1.18197 1.86722 1.46109 1.19855 0.94814 0.81412 1.10188 1.22045 0.95653 0.96878 0.94884 1.21884 1.06912 0.94276 1.04701 1.23382 0.93904 1.02266 0.89082 1.45945 1.28492 1.14205 1.22196 1.17931 0.90361 0.93135 0.94309 1.20987 0.97831 0.91573 1.01913 1.21281 0.96239 1.02175 0.93740 1.17912 0.90053 0.92200 0.94371 1.91510 1.59977 1.80104 1.80493 1.21167 0.97808 0.94091 1.01893 1.20758 0.96697 1.00824 0.94788 1.77468 1.14080 0.96183 1.25148 0.90988 0.76670 0.87829 0.88220 0.81649 0.83885 0.79366 0.75890 0.80608 0.80616 0.82901 0.85424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.22 13.05 21.66 0.28 -48.94 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 3 Si 1.00 42.27 29.55 68.60 2.03 44.30 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.34 -19.09 9.68 84.04 0.81 -18.28 16 8 H 0.09 5.14 7.16 -2.91 -0.02 5.12 16 9 N -0.56 -29.10 5.29 -306.98 -1.62 -30.72 16 10 C 0.44 21.66 7.86 87.66 0.69 22.35 16 11 O -0.62 -35.04 16.08 15.72 0.25 -34.79 16 12 C 0.07 2.85 5.94 71.24 0.42 3.27 16 13 O -0.34 -12.48 9.75 -45.00 -0.44 -12.92 16 14 C 0.46 14.24 7.95 71.23 0.57 14.80 16 15 O -0.53 -19.43 15.31 21.94 0.34 -19.10 16 16 C -0.02 -0.49 6.39 29.10 0.19 -0.30 16 17 C 0.07 1.63 6.02 43.11 0.26 1.89 16 18 C -0.25 -3.84 10.72 22.01 0.24 -3.60 16 19 C 0.05 0.74 10.80 83.50 0.90 1.65 16 20 N -0.33 -6.97 3.80 -187.73 -0.71 -7.68 16 21 C 0.14 2.46 6.69 38.08 0.25 2.72 16 22 C -0.10 -1.06 9.45 22.38 0.21 -0.85 16 23 C -0.12 -1.14 10.02 22.30 0.22 -0.91 16 24 C 0.07 1.09 7.30 22.39 0.16 1.26 16 25 F -0.14 -2.31 17.27 44.97 0.78 -1.53 16 26 C -0.13 -2.15 10.02 22.30 0.22 -1.92 16 27 C -0.11 -2.23 9.66 22.38 0.22 -2.02 16 28 N -0.31 -8.46 11.22 -47.33 -0.53 -8.99 16 29 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 30 H 0.40 19.70 7.90 -92.71 -0.73 18.97 16 31 H 0.10 3.64 8.13 -2.39 -0.02 3.62 16 32 H 0.10 3.59 8.13 -2.39 -0.02 3.57 16 33 H 0.17 2.12 8.12 -2.38 -0.02 2.10 16 34 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.19 1.54 8.06 -2.91 -0.02 1.52 16 36 H 0.22 0.67 7.04 -2.91 -0.02 0.65 16 37 H 0.18 0.47 6.74 -2.91 -0.02 0.45 16 38 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 39 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 40 H 0.13 3.06 7.70 -2.91 -0.02 3.04 16 Total: -1.00 -80.85 368.18 6.59 -74.26 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.39 Total: 26.18 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 5.84 Total: 19.94 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -2.58 Total: -96.33 kcal Atomic # 8 Polarization: -66.96 SS G_CDS: 0.15 Total: -66.81 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.78 Total: -1.53 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -80.85 6.59 -74.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745419370.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.141 kcal (2) G-P(sol) polarization free energy of solvation -80.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds