Wall clock time and date at job start Wed Apr 1 2020 05:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35343 * 126.42643 * 2 1 4 4 C 1.41566 * 105.55542 * 180.02562 * 3 2 1 5 5 C 1.47528 * 126.44949 * 180.02562 * 4 3 2 6 6 O 1.21492 * 120.00195 * 359.97438 * 5 4 3 7 7 O 1.34747 * 120.00047 * 180.02562 * 5 4 3 8 8 C 1.45195 * 117.00080 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.47288 * 179.97438 * 8 7 5 10 10 O 1.21301 * 119.99878 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00224 * 180.02562 * 9 8 7 12 12 C 1.37098 * 120.00095 * 180.02562 * 11 9 8 13 13 H 1.08000 * 120.00129 * 359.97438 * 12 11 9 14 14 C 1.38951 * 120.00178 * 179.97438 * 12 11 9 15 15 N 1.31408 * 119.99618 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00134 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47027 * 60.00520 * 16 14 12 18 18 H 1.48497 * 109.47218 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47245 * 300.00104 * 16 14 12 20 20 N 1.31917 * 107.10281 * 0.02562 * 4 3 2 21 21 N 1.28483 * 110.10618 * 359.71515 * 20 4 3 22 22 C 1.40153 * 124.95449 * 180.29332 * 21 20 4 23 23 C 1.38854 * 120.04154 * 42.23288 * 22 21 20 24 24 C 1.38094 * 119.95215 * 179.71588 * 23 22 21 25 25 C 1.38493 * 120.04237 * 0.58053 * 24 23 22 26 26 F 1.35103 * 119.95200 * 179.69736 * 25 24 23 27 27 C 1.38491 * 120.08755 * 359.67335 * 25 24 23 28 28 C 1.38092 * 120.04431 * 0.04745 * 27 25 24 29 29 H 1.08996 * 109.47181 * 95.17837 * 1 2 3 30 30 H 1.09004 * 109.46883 * 215.17656 * 1 2 3 31 31 H 1.08995 * 109.47461 * 335.17729 * 1 2 3 32 32 H 1.07994 * 127.22079 * 359.97438 * 3 2 1 33 33 H 1.09002 * 109.47595 * 300.00288 * 8 7 5 34 34 H 1.08998 * 109.46668 * 60.00226 * 8 7 5 35 35 H 0.97002 * 119.99985 * 359.97438 * 11 9 8 36 36 H 0.97000 * 119.99763 * 180.02562 * 15 14 12 37 37 H 1.08000 * 120.02409 * 0.02562 * 23 22 21 38 38 H 1.08001 * 119.97445 * 180.25042 * 24 23 22 39 39 H 1.08001 * 119.97468 * 180.02562 * 27 25 24 40 40 H 1.07997 * 120.01588 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3107 1.0890 0.0000 4 6 3.6334 0.5846 -0.0006 5 6 4.8752 1.3812 -0.0003 6 8 4.8184 2.5948 0.0001 7 8 6.0723 0.7628 -0.0015 8 6 7.2518 1.6096 -0.0017 9 6 8.4885 0.7485 -0.0024 10 8 8.3860 -0.4602 -0.0032 11 7 9.7085 1.3213 -0.0022 12 6 10.8336 0.5379 -0.0034 13 1 10.7423 -0.5383 -0.0041 14 6 12.0914 1.1284 -0.0037 15 7 12.2024 2.4377 -0.0024 16 14 13.6243 0.0610 -0.0046 17 1 13.6301 -0.7959 -1.2175 18 1 14.8306 0.9270 -0.0042 19 1 13.6310 -0.7968 1.2076 20 7 3.5467 -0.7317 -0.0015 21 7 2.3138 -1.0931 0.0045 22 6 1.8664 -2.4213 0.0114 23 6 2.4910 -3.3610 0.8206 24 6 2.0449 -4.6679 0.8303 25 6 0.9831 -5.0441 0.0246 26 9 0.5521 -6.3245 0.0310 27 6 0.3623 -4.1094 -0.7871 28 6 0.8017 -2.8003 -0.7954 29 1 -0.3633 -0.0927 -1.0234 30 1 -0.3633 -0.8400 0.5921 31 1 -0.3634 0.9327 0.4314 32 1 2.0066 2.1252 -0.0004 33 1 7.2467 2.2396 -0.8912 34 1 7.2477 2.2382 0.8887 35 1 9.7905 2.2878 -0.0020 36 1 13.0804 2.8500 -0.0029 37 1 3.3218 -3.0690 1.4458 38 1 2.5278 -5.3982 1.4627 39 1 -0.4658 -4.4047 -1.4144 40 1 0.3176 -2.0719 -1.4289 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777154656.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:37 Heat of formation + Delta-G solvation = -49.147559 kcal Electronic energy + Delta-G solvation = -28294.614631 eV Core-core repulsion = 23798.510158 eV Total energy + Delta-G solvation = -4496.104472 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.43380 -43.25909 -40.08654 -39.41076 -38.04554 -36.03435 -33.97250 -33.91631 -33.29734 -31.73076 -31.33644 -29.72150 -28.39718 -27.45184 -25.30059 -24.26566 -23.89633 -22.63982 -21.20709 -20.15493 -19.52581 -18.40130 -18.06562 -17.95021 -17.28768 -17.17586 -16.42692 -16.31483 -16.13109 -15.74368 -15.52449 -15.15850 -14.53511 -14.40540 -14.31115 -13.97787 -13.96561 -13.73701 -13.72082 -13.56055 -13.29047 -12.96033 -12.87608 -12.55477 -12.25789 -11.97690 -11.70672 -11.58364 -11.08257 -11.05910 -10.66192 -10.45808 -10.36462 -10.25360 -10.17663 -9.81247 -9.55230 -9.29964 -8.83536 -8.46383 -8.03687 -6.45781 -3.87556 0.16451 0.54377 1.32119 1.72753 1.90555 2.72901 2.86305 3.13954 3.18818 3.25258 3.30294 3.62548 3.79239 3.98006 4.11515 4.13945 4.20004 4.26896 4.52093 4.57527 4.67471 4.92426 4.96433 5.01641 5.19133 5.20680 5.23096 5.24034 5.38088 5.42434 5.51307 5.53015 5.59821 5.62480 5.74469 6.01384 6.08484 6.11264 6.55154 6.57310 7.50789 7.51687 7.90265 8.00862 8.53678 9.11506 9.44033 9.94655 10.71527 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013062 B = 0.002124 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.152875 B =13182.180020 C =15175.853296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.012 3.988 3 C -0.164 4.164 4 C 0.014 3.986 5 C 0.551 3.449 6 O -0.502 6.502 7 O -0.309 6.309 8 C 0.060 3.940 9 C 0.440 3.560 10 O -0.572 6.572 11 N -0.554 5.554 12 C -0.301 4.301 13 H 0.105 0.895 14 C 0.024 3.976 15 N -0.898 5.898 16 Si 0.934 3.066 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.273 1.273 20 N -0.218 5.218 21 N -0.237 5.237 22 C 0.118 3.882 23 C -0.064 4.064 24 C -0.136 4.136 25 C 0.110 3.890 26 F -0.133 7.133 27 C -0.138 4.138 28 C -0.084 4.084 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.172 0.828 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.395 0.605 36 H 0.274 0.726 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.500 -7.267 0.170 29.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 C -0.191 4.191 4 C -0.146 4.146 5 C 0.393 3.607 6 O -0.389 6.389 7 O -0.222 6.222 8 C -0.018 4.018 9 C 0.224 3.776 10 O -0.456 6.456 11 N -0.191 5.191 12 C -0.431 4.431 13 H 0.123 0.877 14 C -0.178 4.178 15 N -0.539 5.539 16 Si 0.761 3.239 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.198 1.198 20 N -0.051 5.051 21 N -0.021 5.021 22 C 0.028 3.972 23 C -0.084 4.084 24 C -0.155 4.155 25 C 0.090 3.910 26 F -0.111 7.111 27 C -0.157 4.157 28 C -0.104 4.104 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.189 0.811 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.229 0.771 36 H 0.084 0.916 37 H 0.168 0.832 38 H 0.168 0.832 39 H 0.167 0.833 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -27.725 -8.648 0.174 29.042 hybrid contribution 0.532 0.841 -0.038 0.996 sum -27.193 -7.807 0.136 28.291 Atomic orbital electron populations 1.20470 0.86134 1.04510 1.03293 1.21652 0.95641 0.85650 1.07891 1.21524 0.89579 0.99872 1.08140 1.20835 0.92677 0.89521 1.11526 1.19546 0.82933 0.85257 0.72974 1.90851 1.87747 1.13818 1.46462 1.86698 1.13329 1.39714 1.82485 1.22823 0.82652 0.92629 1.03698 1.19303 0.83714 0.88673 0.85888 1.90578 1.86077 1.14034 1.54910 1.41684 1.03691 1.09681 1.64085 1.19672 0.82654 0.92564 1.48165 0.87705 1.25301 0.99365 0.96139 0.96988 1.69607 1.25637 1.08843 1.49790 0.85860 0.79731 0.79132 0.79171 1.19781 1.20894 1.19787 1.74010 1.00053 1.14717 1.16361 1.42762 1.03278 1.04641 1.51460 1.17515 0.98157 0.81047 1.00456 1.21043 0.99130 0.91478 0.96725 1.21130 0.96843 0.96900 1.00629 1.17814 0.95582 0.79281 0.98335 1.91544 1.88824 1.35424 1.95303 1.20990 1.02087 0.91938 1.00719 1.20915 0.95989 0.96388 0.97111 0.90112 0.90687 0.89099 0.81065 0.89289 0.89292 0.77145 0.91626 0.83205 0.83213 0.83345 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.42 8.75 36.01 0.32 -0.10 16 2 C 0.01 0.11 6.74 -81.84 -0.55 -0.44 16 3 C -0.16 -1.92 10.72 -39.35 -0.42 -2.34 16 4 C 0.01 0.21 7.16 -82.78 -0.59 -0.38 16 5 C 0.55 9.93 7.96 34.52 0.27 10.21 16 6 O -0.50 -9.26 16.71 -19.26 -0.32 -9.58 16 7 O -0.31 -6.39 9.77 -47.30 -0.46 -6.85 16 8 C 0.06 1.19 5.95 36.01 0.21 1.41 16 9 C 0.44 10.98 7.86 -10.99 -0.09 10.90 16 10 O -0.57 -16.53 16.08 -14.12 -0.23 -16.75 16 11 N -0.55 -14.33 5.29 -10.96 -0.06 -14.39 16 12 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 13 H 0.11 3.07 7.16 -52.49 -0.38 2.70 16 14 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 15 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 16 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 N -0.22 -3.40 11.74 33.41 0.39 -3.01 16 21 N -0.24 -2.79 3.44 -6.84 -0.02 -2.82 16 22 C 0.12 1.12 6.02 -83.60 -0.50 0.62 16 23 C -0.06 -0.59 9.75 -39.41 -0.38 -0.97 16 24 C -0.14 -1.01 10.02 -39.54 -0.40 -1.41 16 25 C 0.11 0.79 7.30 -39.39 -0.29 0.51 16 26 F -0.13 -1.06 17.27 2.25 0.04 -1.02 16 27 C -0.14 -0.80 10.02 -39.54 -0.40 -1.20 16 28 C -0.08 -0.55 8.49 -39.41 -0.33 -0.89 16 29 H 0.08 0.26 7.57 -51.93 -0.39 -0.13 16 30 H 0.07 0.31 7.47 -51.93 -0.39 -0.08 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 34 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 36 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 40 H 0.15 0.66 6.57 -52.49 -0.34 0.31 16 LS Contribution 367.76 15.07 5.54 5.54 Total: -1.00 -35.33 367.76 -6.73 -42.06 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -3.92 Total: 6.62 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: -3.39 Total: 7.85 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 1.04 Total: -43.89 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -1.01 Total: -33.18 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.04 Total: -1.02 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.33 -6.73 -42.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777154656.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.086 kcal (2) G-P(sol) polarization free energy of solvation -35.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds