Wall clock time and date at job start Wed Apr 1 2020 05:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35343 * 126.42643 * 2 1 4 4 C 1.41566 * 105.55542 * 180.02562 * 3 2 1 5 5 C 1.47528 * 126.44949 * 180.02562 * 4 3 2 6 6 O 1.21492 * 120.00195 * 359.97438 * 5 4 3 7 7 O 1.34747 * 120.00047 * 180.02562 * 5 4 3 8 8 C 1.45195 * 117.00080 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.47288 * 179.97438 * 8 7 5 10 10 O 1.21301 * 119.99878 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00224 * 180.02562 * 9 8 7 12 12 C 1.37098 * 120.00095 * 180.02562 * 11 9 8 13 13 H 1.08000 * 120.00129 * 359.97438 * 12 11 9 14 14 C 1.38951 * 120.00178 * 179.97438 * 12 11 9 15 15 N 1.31408 * 119.99618 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00134 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47027 * 60.00520 * 16 14 12 18 18 H 1.48497 * 109.47218 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47245 * 300.00104 * 16 14 12 20 20 N 1.31917 * 107.10281 * 0.02562 * 4 3 2 21 21 N 1.28483 * 110.10618 * 359.71515 * 20 4 3 22 22 C 1.40153 * 124.95449 * 180.29332 * 21 20 4 23 23 C 1.38854 * 120.04154 * 42.23288 * 22 21 20 24 24 C 1.38094 * 119.95215 * 179.71588 * 23 22 21 25 25 C 1.38493 * 120.04237 * 0.58053 * 24 23 22 26 26 F 1.35103 * 119.95200 * 179.69736 * 25 24 23 27 27 C 1.38491 * 120.08755 * 359.67335 * 25 24 23 28 28 C 1.38092 * 120.04431 * 0.04745 * 27 25 24 29 29 H 1.08996 * 109.47181 * 95.17837 * 1 2 3 30 30 H 1.09004 * 109.46883 * 215.17656 * 1 2 3 31 31 H 1.08995 * 109.47461 * 335.17729 * 1 2 3 32 32 H 1.07994 * 127.22079 * 359.97438 * 3 2 1 33 33 H 1.09002 * 109.47595 * 300.00288 * 8 7 5 34 34 H 1.08998 * 109.46668 * 60.00226 * 8 7 5 35 35 H 0.97002 * 119.99985 * 359.97438 * 11 9 8 36 36 H 0.97000 * 119.99763 * 180.02562 * 15 14 12 37 37 H 1.08000 * 120.02409 * 0.02562 * 23 22 21 38 38 H 1.08001 * 119.97445 * 180.25042 * 24 23 22 39 39 H 1.08001 * 119.97468 * 180.02562 * 27 25 24 40 40 H 1.07997 * 120.01588 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3107 1.0890 0.0000 4 6 3.6334 0.5846 -0.0006 5 6 4.8752 1.3812 -0.0003 6 8 4.8184 2.5948 0.0001 7 8 6.0723 0.7628 -0.0015 8 6 7.2518 1.6096 -0.0017 9 6 8.4885 0.7485 -0.0024 10 8 8.3860 -0.4602 -0.0032 11 7 9.7085 1.3213 -0.0022 12 6 10.8336 0.5379 -0.0034 13 1 10.7423 -0.5383 -0.0041 14 6 12.0914 1.1284 -0.0037 15 7 12.2024 2.4377 -0.0024 16 14 13.6243 0.0610 -0.0046 17 1 13.6301 -0.7959 -1.2175 18 1 14.8306 0.9270 -0.0042 19 1 13.6310 -0.7968 1.2076 20 7 3.5467 -0.7317 -0.0015 21 7 2.3138 -1.0931 0.0045 22 6 1.8664 -2.4213 0.0114 23 6 2.4910 -3.3610 0.8206 24 6 2.0449 -4.6679 0.8303 25 6 0.9831 -5.0441 0.0246 26 9 0.5521 -6.3245 0.0310 27 6 0.3623 -4.1094 -0.7871 28 6 0.8017 -2.8003 -0.7954 29 1 -0.3633 -0.0927 -1.0234 30 1 -0.3633 -0.8400 0.5921 31 1 -0.3634 0.9327 0.4314 32 1 2.0066 2.1252 -0.0004 33 1 7.2467 2.2396 -0.8912 34 1 7.2477 2.2382 0.8887 35 1 9.7905 2.2878 -0.0020 36 1 13.0804 2.8500 -0.0029 37 1 3.3218 -3.0690 1.4458 38 1 2.5278 -5.3982 1.4627 39 1 -0.4658 -4.4047 -1.4144 40 1 0.3176 -2.0719 -1.4289 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777154656.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:36 Heat of formation + Delta-G solvation = -71.047931 kcal Electronic energy + Delta-G solvation = -28295.564302 eV Core-core repulsion = 23798.510158 eV Total energy + Delta-G solvation = -4497.054144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.03132 -44.15816 -41.53798 -40.15641 -39.93401 -37.57355 -36.05687 -34.76127 -33.98658 -33.43992 -32.30784 -30.73607 -29.83844 -28.13318 -26.89363 -25.75012 -24.48749 -23.47820 -22.09892 -21.50752 -21.27199 -20.09896 -19.16216 -18.70951 -18.47617 -18.05774 -17.91255 -17.64201 -17.30541 -16.78304 -16.61456 -16.49777 -15.84132 -15.72178 -15.68557 -15.12773 -14.83026 -14.81319 -14.33084 -14.29527 -14.15358 -14.04191 -13.74510 -13.70245 -13.56678 -13.51711 -13.04714 -12.95148 -12.50690 -12.30172 -12.14333 -12.09211 -11.93313 -11.92781 -11.59483 -11.02213 -10.54571 -10.36093 -10.13824 -10.12632 -9.57171 -8.53594 -6.04504 -0.53190 -0.00378 0.19222 0.93378 0.98776 1.36223 1.39588 1.46496 1.55776 1.83844 1.91136 2.27239 2.28857 2.93527 3.06027 3.11424 3.24888 3.51085 3.54762 3.64767 3.76109 3.98095 4.00615 4.08905 4.12313 4.19438 4.29557 4.38542 4.45500 4.69438 4.77184 4.86433 4.90528 4.91833 5.00071 5.06025 5.10376 5.20215 5.35089 5.51110 5.83146 5.87034 6.34805 6.48010 6.72589 7.00974 7.37296 7.91687 8.63253 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013062 B = 0.002124 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.152875 B =13182.180020 C =15175.853296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.032 3.968 3 C -0.173 4.173 4 C -0.019 4.019 5 C 0.552 3.448 6 O -0.512 6.512 7 O -0.335 6.335 8 C 0.070 3.930 9 C 0.436 3.564 10 O -0.619 6.619 11 N -0.556 5.556 12 C -0.340 4.340 13 H 0.083 0.917 14 C -0.008 4.008 15 N -0.914 5.914 16 Si 0.999 3.001 17 H -0.270 1.270 18 H -0.267 1.267 19 H -0.270 1.270 20 N -0.263 5.263 21 N -0.231 5.231 22 C 0.090 3.910 23 C -0.081 4.081 24 C -0.138 4.138 25 C 0.105 3.895 26 F -0.136 7.136 27 C -0.123 4.123 28 C -0.070 4.070 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.191 0.809 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.401 0.599 36 H 0.282 0.718 37 H 0.130 0.870 38 H 0.160 0.840 39 H 0.182 0.818 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.924 -7.328 -0.557 31.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 C -0.200 4.200 4 C -0.176 4.176 5 C 0.395 3.605 6 O -0.399 6.399 7 O -0.249 6.249 8 C -0.007 4.007 9 C 0.222 3.778 10 O -0.505 6.505 11 N -0.193 5.193 12 C -0.469 4.469 13 H 0.101 0.899 14 C -0.209 4.209 15 N -0.553 5.553 16 Si 0.822 3.178 17 H -0.195 1.195 18 H -0.191 1.191 19 H -0.195 1.195 20 N -0.098 5.098 21 N -0.016 5.016 22 C 0.001 3.999 23 C -0.101 4.101 24 C -0.157 4.157 25 C 0.086 3.914 26 F -0.114 7.114 27 C -0.142 4.142 28 C -0.090 4.090 29 H 0.126 0.874 30 H 0.106 0.894 31 H 0.128 0.872 32 H 0.208 0.792 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.236 0.764 36 H 0.091 0.909 37 H 0.148 0.852 38 H 0.178 0.822 39 H 0.199 0.801 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -30.155 -8.668 -0.550 31.381 hybrid contribution 1.163 0.777 0.193 1.413 sum -28.992 -7.890 -0.357 30.048 Atomic orbital electron populations 1.20750 0.82115 1.06120 1.05410 1.22427 0.97650 0.84105 1.04719 1.21824 0.87965 1.01472 1.08727 1.20809 0.92794 0.89992 1.14010 1.19939 0.82705 0.85541 0.72294 1.90817 1.87784 1.14085 1.47200 1.86692 1.14293 1.40753 1.83187 1.22640 0.80758 0.91484 1.05848 1.20072 0.84833 0.88610 0.84269 1.90539 1.86952 1.16311 1.56740 1.41707 1.03801 1.09818 1.63983 1.19677 0.84231 0.92066 1.50921 0.89947 1.26140 1.01673 0.97528 0.95569 1.69664 1.26867 1.09893 1.48922 0.84908 0.76177 0.77650 0.79113 1.19527 1.19135 1.19526 1.73914 1.02599 1.15028 1.18299 1.43013 1.02533 1.06027 1.50028 1.17901 0.99651 0.80255 1.02111 1.20974 0.99240 0.92433 0.97468 1.21208 0.97145 0.96363 1.00962 1.17980 0.95531 0.79427 0.98497 1.91541 1.88798 1.35773 1.95331 1.21331 1.02088 0.90992 0.99812 1.21176 0.94514 0.97209 0.96100 0.87408 0.89427 0.87241 0.79203 0.87008 0.87011 0.76430 0.90873 0.85171 0.82241 0.80061 0.80992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.49 8.75 71.24 0.62 0.13 16 2 C 0.03 0.56 6.74 41.27 0.28 0.84 16 3 C -0.17 -3.91 10.72 22.42 0.24 -3.67 16 4 C -0.02 -0.61 7.16 42.40 0.30 -0.31 16 5 C 0.55 20.56 7.96 70.27 0.56 21.12 16 6 O -0.51 -19.06 16.71 19.86 0.33 -18.72 16 7 O -0.34 -14.44 9.77 -50.19 -0.49 -14.93 16 8 C 0.07 2.85 5.95 71.24 0.42 3.28 16 9 C 0.44 22.60 7.86 87.66 0.69 23.29 16 10 O -0.62 -37.54 16.08 15.70 0.25 -37.29 16 11 N -0.56 -29.61 5.29 -306.98 -1.62 -31.24 16 12 C -0.34 -19.67 9.68 84.04 0.81 -18.86 16 13 H 0.08 5.06 7.16 -2.91 -0.02 5.04 16 14 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 15 N -0.91 -49.32 13.05 21.66 0.28 -49.04 16 16 Si 1.00 42.95 29.55 68.60 2.03 44.98 16 17 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 18 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 20 N -0.26 -8.56 11.74 -48.22 -0.57 -9.13 16 21 N -0.23 -5.37 3.44 -175.56 -0.60 -5.97 16 22 C 0.09 1.63 6.02 38.11 0.23 1.86 16 23 C -0.08 -1.54 9.75 22.38 0.22 -1.33 16 24 C -0.14 -2.01 10.02 22.30 0.22 -1.79 16 25 C 0.11 1.33 7.30 22.39 0.16 1.49 16 26 F -0.14 -1.92 17.27 44.97 0.78 -1.14 16 27 C -0.12 -1.02 10.02 22.30 0.22 -0.80 16 28 C -0.07 -0.71 8.49 22.38 0.19 -0.52 16 29 H 0.11 0.13 7.57 -2.39 -0.02 0.11 16 30 H 0.09 0.35 7.47 -2.39 -0.02 0.33 16 31 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.19 3.33 8.06 -2.91 -0.02 3.31 16 33 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 34 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 35 H 0.40 19.97 7.90 -92.71 -0.73 19.24 16 36 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 37 H 0.13 2.90 8.06 -2.91 -0.02 2.87 16 38 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 39 H 0.18 0.34 8.06 -2.91 -0.02 0.32 16 40 H 0.17 0.77 6.57 -2.91 -0.02 0.75 16 Total: -1.00 -80.19 367.76 6.43 -73.76 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.39 Total: 23.96 kcal Atomic # 6 Polarization: 19.12 SS G_CDS: 5.65 Total: 24.76 kcal Atomic # 7 Polarization: -92.87 SS G_CDS: -2.51 Total: -95.38 kcal Atomic # 8 Polarization: -71.03 SS G_CDS: 0.09 Total: -70.94 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.78 Total: -1.14 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -80.19 6.43 -73.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777154656.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.714 kcal (2) G-P(sol) polarization free energy of solvation -80.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds