Wall clock time and date at job start Wed Apr 1 2020 04:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86802 * 119.99842 * 2 1 4 4 H 1.48501 * 109.46751 * 239.99860 * 3 2 1 5 5 H 1.48499 * 109.47108 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99838 * 3 2 1 7 7 C 1.38803 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99895 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00081 * 0.02562 * 7 2 1 10 10 C 1.76204 * 100.00120 * 185.65894 * 9 7 2 11 11 C 1.39117 * 120.18663 * 6.86699 * 10 9 7 12 12 C 1.37914 * 120.04584 * 180.25664 * 11 10 9 13 13 C 1.38656 * 120.44158 * 359.74297 * 12 11 10 14 14 C 1.37806 * 120.38044 * 359.97438 * 13 12 11 15 15 C 1.39677 * 119.93658 * 0.02664 * 14 13 12 16 16 C 1.47430 * 120.21373 * 179.97438 * 15 14 13 17 17 O 1.21607 * 120.00215 * 179.97438 * 16 15 14 18 18 N 1.34775 * 119.99946 * 0.02562 * 16 15 14 19 19 C 1.46502 * 120.00134 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47095 * 179.97438 * 19 18 16 21 21 C 1.53001 * 109.46995 * 180.02562 * 20 19 18 22 22 C 1.50702 * 109.47155 * 180.02562 * 21 20 19 23 23 N 1.27566 * 126.41606 * 0.02562 * 22 21 20 24 24 N 1.39149 * 113.16518 * 179.97438 * 23 22 21 25 25 C 1.34957 * 111.12226 * 359.97438 * 24 23 22 26 26 O 1.21301 * 127.50164 * 179.97438 * 25 24 23 27 27 C 1.51441 * 126.41491 * 179.71083 * 22 21 20 28 28 H 0.97000 * 120.00207 * 0.02562 * 1 2 3 29 29 H 1.07993 * 119.97764 * 359.97438 * 11 10 9 30 30 H 1.08009 * 119.77914 * 179.76543 * 12 11 10 31 31 H 1.08000 * 119.80771 * 179.97438 * 13 12 11 32 32 H 1.07996 * 120.02948 * 180.02562 * 14 13 12 33 33 H 0.97000 * 120.00031 * 359.97438 * 18 16 15 34 34 H 1.08996 * 109.47323 * 59.99681 * 19 18 16 35 35 H 1.09003 * 109.47374 * 299.99833 * 19 18 16 36 36 H 1.08998 * 109.47551 * 60.00089 * 20 19 18 37 37 H 1.09001 * 109.47310 * 299.99516 * 20 19 18 38 38 H 1.09003 * 109.47313 * 299.99932 * 21 20 19 39 39 H 1.08996 * 109.47484 * 59.99842 * 21 20 19 40 40 H 0.97005 * 124.43785 * 179.97438 * 24 23 22 41 41 H 1.08996 * 110.61215 * 298.54814 * 27 22 21 42 42 H 1.08994 * 110.60710 * 61.52190 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6964 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1032 1.6965 1.2125 7 6 2.0095 -1.2021 0.0005 8 1 3.0896 -1.2020 0.0010 9 16 1.1286 -2.7280 0.0005 10 6 2.4710 -3.8564 0.1724 11 6 3.7581 -3.3821 0.4043 12 6 4.8075 -4.2676 0.5331 13 6 4.5897 -5.6337 0.4384 14 6 3.3211 -6.1233 0.2148 15 6 2.2467 -5.2407 0.0819 16 6 0.8870 -5.7578 -0.1579 17 8 -0.0457 -4.9859 -0.2726 18 7 0.6776 -7.0860 -0.2491 19 6 -0.6736 -7.5999 -0.4868 20 6 -0.6346 -9.1282 -0.5477 21 6 -2.0456 -9.6649 -0.7966 22 6 -2.0073 -11.1702 -0.8560 23 7 -0.9747 -11.9073 -0.7224 24 7 -1.2552 -13.2663 -0.8260 25 6 -2.5703 -13.4762 -1.0450 26 8 -3.1355 -14.5407 -1.1816 27 6 -3.1884 -12.0915 -1.0786 28 1 -0.4850 0.8400 -0.0004 29 1 3.9364 -2.3196 0.4789 30 1 5.8057 -3.8945 0.7092 31 1 5.4190 -6.3179 0.5404 32 1 3.1578 -7.1884 0.1425 33 1 1.4215 -7.7018 -0.1572 34 1 -1.0501 -7.2085 -1.4318 35 1 -1.3301 -7.2849 0.3243 36 1 -0.2579 -9.5200 0.3971 37 1 0.0218 -9.4429 -1.3590 38 1 -2.7024 -9.3502 0.0144 39 1 -2.4219 -9.2731 -1.7416 40 1 -0.5924 -13.9706 -0.7506 41 1 -3.9205 -11.9769 -0.2793 42 1 -3.6459 -11.9009 -2.0494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854487627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:02 Heat of formation + Delta-G solvation = 2.334688 kcal Electronic energy + Delta-G solvation = -25772.978047 eV Core-core repulsion = 21845.319188 eV Total energy + Delta-G solvation = -3927.658858 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.61610 -39.50975 -38.12313 -37.52041 -35.85103 -33.67424 -32.75877 -31.50228 -30.33719 -30.26567 -29.66450 -26.75588 -25.82854 -23.36057 -22.28642 -21.96468 -21.63684 -20.41470 -19.78143 -18.32535 -18.10254 -17.14963 -16.85581 -15.95798 -15.80576 -15.74367 -15.34390 -15.17562 -15.12269 -14.55701 -14.44483 -14.02592 -13.86375 -13.64172 -13.51966 -12.99146 -12.91099 -12.79230 -12.48060 -12.44343 -11.91592 -11.71063 -11.58212 -11.49482 -11.20862 -11.18884 -11.14921 -10.95422 -10.34579 -10.31107 -9.82912 -9.65320 -9.50093 -9.43287 -8.79654 -8.73097 -8.33552 -8.07756 -6.54094 -6.46570 -4.17166 1.06621 1.52933 2.01459 2.09043 2.22194 3.10269 3.13540 3.17706 3.20641 3.39490 3.43382 3.51688 3.69723 4.06290 4.27919 4.48521 4.60072 4.70640 4.72929 4.79388 4.94388 5.11120 5.14151 5.22846 5.31834 5.33963 5.39013 5.48361 5.59693 5.65153 5.89549 5.92473 6.05773 6.11545 6.14710 6.38431 6.59053 6.74164 6.84854 7.02472 7.06431 7.12947 7.43004 7.44122 7.58689 7.89165 8.15370 8.78390 8.99576 10.56592 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.020145 B = 0.001863 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.608002 B =15028.738540 C =16377.288940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.084 3.916 3 Si 0.919 3.081 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.596 4.596 8 H 0.090 0.910 9 S 0.185 5.815 10 C -0.057 4.057 11 C -0.153 4.153 12 C -0.077 4.077 13 C -0.187 4.187 14 C -0.061 4.061 15 C -0.178 4.178 16 C 0.552 3.448 17 O -0.509 6.509 18 N -0.740 5.740 19 C 0.122 3.878 20 C -0.128 4.128 21 C -0.044 4.044 22 C 0.103 3.897 23 N -0.233 5.233 24 N -0.574 5.574 25 C 0.498 3.502 26 O -0.504 6.504 27 C -0.177 4.177 28 H 0.275 0.725 29 H 0.139 0.861 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.395 0.605 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.435 0.565 41 H 0.138 0.862 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.119 -20.252 -0.940 20.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.127 4.127 3 Si 0.744 3.256 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.743 4.743 8 H 0.108 0.892 9 S 0.450 5.550 10 C -0.177 4.177 11 C -0.178 4.178 12 C -0.099 4.099 13 C -0.212 4.212 14 C -0.081 4.081 15 C -0.193 4.193 16 C 0.341 3.659 17 O -0.387 6.387 18 N -0.394 5.394 19 C -0.002 4.002 20 C -0.166 4.166 21 C -0.083 4.083 22 C -0.090 4.090 23 N -0.042 5.042 24 N -0.321 5.321 25 C 0.284 3.716 26 O -0.377 6.377 27 C -0.219 4.219 28 H 0.085 0.915 29 H 0.156 0.844 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.230 0.770 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.280 0.720 41 H 0.156 0.844 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.856 -20.109 -1.088 20.340 hybrid contribution 1.982 0.308 0.104 2.009 sum -0.874 -19.801 -0.983 19.845 Atomic orbital electron populations 1.69962 1.06214 1.28516 1.44358 1.25091 0.94973 0.99597 0.93069 0.86208 0.79484 0.80651 0.79272 1.19494 1.20563 1.19500 1.24019 0.96970 0.94116 1.59194 0.89215 1.84729 1.02266 0.92828 1.75198 1.23098 1.00748 0.97047 0.96828 1.21438 0.91747 1.00854 1.03811 1.21089 0.98119 0.93397 0.97306 1.20638 0.96360 0.95264 1.08928 1.20898 0.92578 0.97471 0.97166 1.19111 0.92622 0.92615 1.14986 1.18298 0.88965 0.81599 0.77006 1.90784 1.43587 1.55398 1.48885 1.45802 1.09815 1.07245 1.76566 1.21225 0.84864 0.92080 1.02075 1.21695 0.96281 0.94770 1.03858 1.20206 0.99208 0.83987 1.04934 1.25393 0.90533 0.97342 0.95747 1.74743 1.25953 0.88696 1.14766 1.47646 1.09544 1.04865 1.70056 1.21397 0.83384 0.91238 0.75611 1.90836 1.67583 1.29993 1.49277 1.22159 0.99685 0.92333 1.07716 0.91479 0.84394 0.87040 0.87094 0.87134 0.76988 0.91436 0.91434 0.90495 0.90498 0.87922 0.87911 0.72014 0.84437 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.38 13.22 55.49 0.73 -23.65 16 2 C 0.08 2.27 5.49 -17.46 -0.10 2.17 16 3 Si 0.92 20.42 29.55 -169.99 -5.02 15.40 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 7 C -0.60 -16.22 9.00 30.94 0.28 -15.94 16 8 H 0.09 2.31 4.98 -52.49 -0.26 2.05 16 9 S 0.19 4.88 18.56 -107.50 -2.00 2.88 16 10 C -0.06 -1.28 6.15 -38.39 -0.24 -1.52 16 11 C -0.15 -3.15 9.22 -39.37 -0.36 -3.51 16 12 C -0.08 -1.29 10.02 -39.55 -0.40 -1.68 16 13 C -0.19 -2.81 10.02 -39.58 -0.40 -3.20 16 14 C -0.06 -0.93 9.53 -39.20 -0.37 -1.30 16 15 C -0.18 -3.41 5.89 -104.75 -0.62 -4.02 16 16 C 0.55 10.15 7.75 -12.52 -0.10 10.05 16 17 O -0.51 -11.39 13.77 5.27 0.07 -11.32 16 18 N -0.74 -9.43 5.51 -61.38 -0.34 -9.77 16 19 C 0.12 1.21 5.67 -4.04 -0.02 1.18 16 20 C -0.13 -0.80 4.83 -26.73 -0.13 -0.93 16 21 C -0.04 -0.18 5.83 -27.88 -0.16 -0.34 16 22 C 0.10 0.55 7.28 -78.73 -0.57 -0.02 16 23 N -0.23 -1.69 11.52 35.53 0.41 -1.29 16 24 N -0.57 -4.18 7.13 31.51 0.22 -3.96 16 25 C 0.50 4.16 8.93 -10.42 -0.09 4.07 16 26 O -0.50 -6.08 18.03 5.54 0.10 -5.98 16 27 C -0.18 -0.84 6.93 -28.19 -0.20 -1.03 16 28 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.14 2.95 5.03 -52.49 -0.26 2.69 16 30 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 31 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.11 1.24 6.40 -52.49 -0.34 0.91 16 33 H 0.40 3.98 6.50 -40.82 -0.27 3.71 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.43 2.46 8.96 -183.31 -1.64 0.82 16 41 H 0.14 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.14 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 372.60 15.07 5.62 5.62 Total: -1.00 -35.39 372.60 -9.81 -45.20 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.13 Total: 2.91 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -3.47 Total: -16.05 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 1.03 Total: -38.66 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: 0.17 Total: -17.30 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 4.88 SS G_CDS: -2.00 Total: 2.88 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.39 -9.81 -45.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854487627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.537 kcal (2) G-P(sol) polarization free energy of solvation -35.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds