Wall clock time and date at job start Wed Apr 1 2020 04:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86799 * 119.99700 * 2 1 4 4 H 1.48500 * 109.46801 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47270 * 299.99813 * 3 2 1 6 6 H 1.48491 * 109.47259 * 60.00254 * 3 2 1 7 7 C 1.40023 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00023 * 192.10909 * 7 2 1 9 9 C 1.41550 * 120.00313 * 12.11609 * 7 2 1 10 10 C 1.41165 * 120.99592 * 201.11944 * 9 7 2 11 11 C 1.36589 * 119.12190 * 180.02562 * 10 9 7 12 12 N 1.32070 * 121.26605 * 359.74540 * 11 10 9 13 13 C 1.32492 * 122.22041 * 0.52546 * 12 11 10 14 14 N 1.39467 * 119.64515 * 179.74875 * 13 12 11 15 15 C 1.34777 * 119.99856 * 6.01930 * 14 13 12 16 16 O 1.21585 * 119.99778 * 355.45407 * 15 14 13 17 17 N 1.34769 * 120.00256 * 175.45334 * 15 14 13 18 18 C 1.46501 * 120.00186 * 179.97438 * 17 15 14 19 19 H 1.08995 * 109.47248 * 325.00091 * 18 17 15 20 20 C 1.53004 * 109.47065 * 204.99740 * 18 17 15 21 21 C 1.53000 * 109.46729 * 65.00442 * 20 18 17 22 22 O 1.42905 * 109.47231 * 179.97438 * 21 20 18 23 23 C 1.50700 * 109.47104 * 85.00201 * 18 17 15 24 24 C 1.33385 * 125.20678 * 219.99887 * 23 18 17 25 25 C 1.38425 * 114.92600 * 179.97438 * 24 23 18 26 26 C 1.33385 * 114.91818 * 0.02562 * 25 24 23 27 27 S 1.75881 * 125.20401 * 39.69352 * 23 18 17 28 28 C 1.38643 * 120.70746 * 359.47493 * 13 12 11 29 29 H 0.96994 * 120.00348 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.43735 * 359.97438 * 10 9 7 31 31 H 1.08005 * 119.36902 * 179.97438 * 11 10 9 32 32 H 0.96995 * 120.00508 * 186.01472 * 14 13 12 33 33 H 0.96996 * 120.00057 * 0.02562 * 17 15 14 34 34 H 1.08993 * 109.47676 * 305.00485 * 20 18 17 35 35 H 1.08996 * 109.46827 * 184.99699 * 20 18 17 36 36 H 1.08999 * 109.47333 * 299.99829 * 21 20 18 37 37 H 1.08998 * 109.47462 * 59.99710 * 21 20 18 38 38 H 0.96699 * 113.99917 * 180.02562 * 22 21 20 39 39 H 1.08010 * 122.53528 * 0.02562 * 24 23 18 40 40 H 1.08002 * 122.54031 * 180.02562 * 25 24 23 41 41 H 1.07997 * 125.19860 * 179.97438 * 26 25 24 42 42 H 1.08008 * 120.66053 * 180.27447 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7013 1.3464 -0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8827 2.3964 1.2124 7 6 2.0075 -1.2126 0.0005 8 1 3.0696 -1.2230 0.1968 9 6 1.3235 -2.4250 -0.2562 10 6 1.8596 -3.6638 0.1570 11 6 1.1674 -4.8103 -0.1112 12 7 0.0081 -4.7792 -0.7432 13 6 -0.5399 -3.6466 -1.1583 14 7 -1.7644 -3.6766 -1.8253 15 6 -2.4421 -4.8362 -1.9380 16 8 -1.9488 -5.8705 -1.5317 17 7 -3.6664 -4.8491 -2.5012 18 6 -4.4028 -6.1096 -2.6242 19 1 -3.7026 -6.9221 -2.8181 20 6 -5.3988 -6.0076 -3.7812 21 6 -4.6359 -5.8543 -5.0986 22 8 -5.5660 -5.7596 -6.1794 23 6 -5.1476 -6.3834 -1.3430 24 6 -5.2721 -7.5797 -0.7665 25 6 -6.0028 -7.5875 0.4092 26 6 -6.4721 -6.3975 0.7871 27 16 -5.9794 -5.1730 -0.3753 28 6 0.0881 -2.4315 -0.9319 29 1 -0.4850 0.8400 0.0004 30 1 2.8050 -3.7045 0.6775 31 1 1.5741 -5.7603 0.2027 32 1 -2.1283 -2.8631 -2.2080 33 1 -4.0598 -4.0240 -2.8257 34 1 -6.0425 -5.1410 -3.6312 35 1 -6.0077 -6.9109 -3.8171 36 1 -4.0268 -4.9511 -5.0628 37 1 -3.9921 -6.7209 -5.2487 38 1 -5.1515 -5.6607 -7.0475 39 1 -4.8352 -8.4745 -1.1849 40 1 -6.1794 -8.4888 0.9774 41 1 -7.0608 -6.2135 1.6736 42 1 -0.3615 -1.5083 -1.2668 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871724167.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:18 Heat of formation + Delta-G solvation = -3.851415 kcal Electronic energy + Delta-G solvation = -27249.830198 eV Core-core repulsion = 23321.903090 eV Total energy + Delta-G solvation = -3927.927108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.00691 -38.53995 -37.64323 -37.21233 -35.34285 -34.23717 -33.73474 -31.51340 -30.44710 -29.57215 -28.37250 -26.02512 -25.58912 -23.23891 -22.29977 -21.84718 -21.15559 -20.19137 -19.32054 -18.19901 -17.78756 -17.63384 -17.15951 -15.95241 -15.75606 -15.53172 -15.21824 -14.73176 -14.47751 -14.32037 -14.19325 -14.14915 -13.48830 -13.16481 -12.97087 -12.84724 -12.66107 -12.61304 -12.29934 -12.17631 -12.11977 -11.64884 -11.45911 -11.32754 -11.16350 -10.89981 -10.71529 -10.27808 -10.23069 -10.09167 -9.79438 -9.59445 -9.39834 -9.05227 -8.64688 -8.39365 -7.97644 -7.72034 -6.99488 -6.75512 -4.63131 1.00493 1.65503 2.04941 2.69680 2.72369 2.80357 3.00533 3.02913 3.05966 3.25362 3.79984 3.83551 3.88988 4.52764 4.65671 4.72031 4.76154 4.92363 5.04897 5.12289 5.32725 5.36089 5.50687 5.57802 5.71039 5.73271 5.82856 5.96280 6.09532 6.29319 6.42895 6.54430 6.62244 6.65685 6.81994 6.93578 7.17351 7.25626 7.33972 7.44926 7.50592 7.88527 8.11121 8.37004 8.47772 8.74017 8.76374 9.16819 9.75265 10.05961 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011940 B = 0.002773 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.570291 B =10093.458251 C =10613.285565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.449 4.449 8 H 0.081 0.919 9 C 0.140 3.860 10 C -0.285 4.285 11 C 0.119 3.881 12 N -0.553 5.553 13 C 0.353 3.647 14 N -0.666 5.666 15 C 0.693 3.307 16 O -0.525 6.525 17 N -0.752 5.752 18 C 0.242 3.758 19 H 0.108 0.892 20 C -0.121 4.121 21 C 0.076 3.924 22 O -0.576 6.576 23 C -0.179 4.179 24 C -0.130 4.130 25 C -0.133 4.133 26 C -0.221 4.221 27 S 0.111 5.889 28 C -0.250 4.250 29 H 0.280 0.720 30 H 0.100 0.900 31 H 0.121 0.879 32 H 0.403 0.597 33 H 0.392 0.608 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.381 0.619 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.161 0.839 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.487 -6.499 -6.988 16.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.144 4.144 3 Si 0.738 3.262 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.480 4.480 8 H 0.100 0.900 9 C 0.131 3.869 10 C -0.309 4.309 11 C -0.035 4.035 12 N -0.272 5.272 13 C 0.128 3.872 14 N -0.314 5.314 15 C 0.393 3.607 16 O -0.395 6.395 17 N -0.410 5.410 18 C 0.134 3.866 19 H 0.126 0.874 20 C -0.160 4.160 21 C -0.002 4.002 22 O -0.382 6.382 23 C -0.298 4.298 24 C -0.161 4.161 25 C -0.164 4.164 26 C -0.356 4.356 27 S 0.375 5.625 28 C -0.276 4.276 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.139 0.861 32 H 0.238 0.762 33 H 0.226 0.774 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.228 0.772 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.178 0.822 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.347 -6.641 -6.373 17.045 hybrid contribution 1.030 0.957 -0.151 1.414 sum -13.317 -5.684 -6.523 15.881 Atomic orbital electron populations 1.69745 1.07611 1.28994 1.35277 1.25977 0.94847 1.01547 0.91995 0.86163 0.80896 0.80513 0.78608 1.18325 1.19671 1.19868 1.19649 0.96412 0.90202 1.41754 0.90037 1.17581 0.90487 0.92253 0.86554 1.21644 1.03588 0.94099 1.11580 1.21453 0.90330 0.96653 0.95041 1.67198 1.13187 1.27490 1.19301 1.17985 0.84966 0.90818 0.93478 1.42532 1.20643 1.09869 1.58327 1.16057 0.80336 0.84825 0.79484 1.91022 1.67495 1.30463 1.50567 1.45390 1.17989 1.10055 1.67555 1.18965 0.91311 0.87944 0.88377 0.87438 1.21797 0.97939 1.04577 0.91650 1.22152 0.91025 1.00488 0.86510 1.86435 1.36778 1.96922 1.18054 1.24987 1.05773 0.96708 1.02328 1.20058 1.01756 0.98020 0.96231 1.20127 1.00353 0.98325 0.97583 1.25610 1.08744 0.96381 1.04906 1.84197 1.49123 1.11723 1.17471 1.21778 1.00707 0.95594 1.09482 0.90878 0.88138 0.86149 0.76234 0.77406 0.90380 0.89262 0.93076 0.93231 0.77220 0.84325 0.84480 0.82159 0.84348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.21 10.50 55.55 0.58 -18.63 16 2 C 0.07 1.78 5.31 -17.35 -0.09 1.69 16 3 Si 0.91 17.78 29.58 -169.99 -5.03 12.75 16 4 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.45 -11.49 9.15 -37.65 -0.34 -11.83 16 8 H 0.08 2.00 7.88 -52.48 -0.41 1.59 16 9 C 0.14 3.67 5.65 -106.55 -0.60 3.07 16 10 C -0.29 -7.04 9.85 -39.07 -0.38 -7.43 16 11 C 0.12 2.90 11.10 -18.04 -0.20 2.70 16 12 N -0.55 -14.25 7.86 -12.75 -0.10 -14.35 16 13 C 0.35 8.60 7.42 -154.67 -1.15 7.45 16 14 N -0.67 -13.04 5.40 -15.86 -0.09 -13.12 16 15 C 0.69 13.07 8.48 -86.92 -0.74 12.33 16 16 O -0.53 -12.20 14.26 5.29 0.08 -12.12 16 17 N -0.75 -10.03 4.29 -59.81 -0.26 -10.28 16 18 C 0.24 2.93 2.40 -69.08 -0.17 2.76 16 19 H 0.11 1.45 7.56 -51.93 -0.39 1.06 16 20 C -0.12 -1.15 5.10 -26.73 -0.14 -1.29 16 21 C 0.08 0.68 6.93 37.16 0.26 0.94 16 22 O -0.58 -5.20 13.66 -35.23 -0.48 -5.68 16 23 C -0.18 -2.33 5.42 -36.00 -0.19 -2.53 16 24 C -0.13 -1.64 10.04 -41.21 -0.41 -2.05 16 25 C -0.13 -1.56 10.18 -41.21 -0.42 -1.98 16 26 C -0.22 -2.58 11.23 29.04 0.33 -2.25 16 27 S 0.11 1.40 23.06 -107.50 -2.48 -1.08 16 28 C -0.25 -6.32 8.67 -38.46 -0.33 -6.66 16 29 H 0.28 6.14 8.29 -40.82 -0.34 5.80 16 30 H 0.10 2.28 8.06 -52.49 -0.42 1.85 16 31 H 0.12 2.58 8.06 -52.48 -0.42 2.16 16 32 H 0.40 6.45 8.72 -40.82 -0.36 6.10 16 33 H 0.39 4.18 8.62 -40.82 -0.35 3.83 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.45 7.75 -51.93 -0.40 0.05 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.38 1.83 9.12 45.56 0.42 2.24 16 39 H 0.14 1.55 8.06 -52.48 -0.42 1.13 16 40 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.14 3.48 5.81 -52.48 -0.30 3.17 16 LS Contribution 375.32 15.07 5.66 5.66 Total: -1.00 -33.54 375.32 -11.03 -44.56 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -4.32 Total: 17.37 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -4.59 Total: -5.07 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.14 Total: -56.39 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.41 Total: -17.80 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.48 Total: -1.08 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.54 -11.03 -44.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871724167.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.711 kcal (2) G-P(sol) polarization free energy of solvation -33.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds