Wall clock time and date at job start Wed Apr 1 2020 04:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86799 * 119.99700 * 2 1 4 4 H 1.48500 * 109.46801 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47270 * 299.99813 * 3 2 1 6 6 H 1.48491 * 109.47259 * 60.00254 * 3 2 1 7 7 C 1.40023 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00023 * 192.10909 * 7 2 1 9 9 C 1.41550 * 120.00313 * 12.11609 * 7 2 1 10 10 C 1.41165 * 120.99592 * 201.11944 * 9 7 2 11 11 C 1.36589 * 119.12190 * 180.02562 * 10 9 7 12 12 N 1.32070 * 121.26605 * 359.74540 * 11 10 9 13 13 C 1.32492 * 122.22041 * 0.52546 * 12 11 10 14 14 N 1.39467 * 119.64515 * 179.74875 * 13 12 11 15 15 C 1.34777 * 119.99856 * 6.01930 * 14 13 12 16 16 O 1.21585 * 119.99778 * 355.45407 * 15 14 13 17 17 N 1.34769 * 120.00256 * 175.45334 * 15 14 13 18 18 C 1.46501 * 120.00186 * 179.97438 * 17 15 14 19 19 H 1.08995 * 109.47248 * 325.00091 * 18 17 15 20 20 C 1.53004 * 109.47065 * 204.99740 * 18 17 15 21 21 C 1.53000 * 109.46729 * 65.00442 * 20 18 17 22 22 O 1.42905 * 109.47231 * 179.97438 * 21 20 18 23 23 C 1.50700 * 109.47104 * 85.00201 * 18 17 15 24 24 C 1.33385 * 125.20678 * 219.99887 * 23 18 17 25 25 C 1.38425 * 114.92600 * 179.97438 * 24 23 18 26 26 C 1.33385 * 114.91818 * 0.02562 * 25 24 23 27 27 S 1.75881 * 125.20401 * 39.69352 * 23 18 17 28 28 C 1.38643 * 120.70746 * 359.47493 * 13 12 11 29 29 H 0.96994 * 120.00348 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.43735 * 359.97438 * 10 9 7 31 31 H 1.08005 * 119.36902 * 179.97438 * 11 10 9 32 32 H 0.96995 * 120.00508 * 186.01472 * 14 13 12 33 33 H 0.96996 * 120.00057 * 0.02562 * 17 15 14 34 34 H 1.08993 * 109.47676 * 305.00485 * 20 18 17 35 35 H 1.08996 * 109.46827 * 184.99699 * 20 18 17 36 36 H 1.08999 * 109.47333 * 299.99829 * 21 20 18 37 37 H 1.08998 * 109.47462 * 59.99710 * 21 20 18 38 38 H 0.96699 * 113.99917 * 180.02562 * 22 21 20 39 39 H 1.08010 * 122.53528 * 0.02562 * 24 23 18 40 40 H 1.08002 * 122.54031 * 180.02562 * 25 24 23 41 41 H 1.07997 * 125.19860 * 179.97438 * 26 25 24 42 42 H 1.08008 * 120.66053 * 180.27447 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7013 1.3464 -0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8827 2.3964 1.2124 7 6 2.0075 -1.2126 0.0005 8 1 3.0696 -1.2230 0.1968 9 6 1.3235 -2.4250 -0.2562 10 6 1.8596 -3.6638 0.1570 11 6 1.1674 -4.8103 -0.1112 12 7 0.0081 -4.7792 -0.7432 13 6 -0.5399 -3.6466 -1.1583 14 7 -1.7644 -3.6766 -1.8253 15 6 -2.4421 -4.8362 -1.9380 16 8 -1.9488 -5.8705 -1.5317 17 7 -3.6664 -4.8491 -2.5012 18 6 -4.4028 -6.1096 -2.6242 19 1 -3.7026 -6.9221 -2.8181 20 6 -5.3988 -6.0076 -3.7812 21 6 -4.6359 -5.8543 -5.0986 22 8 -5.5660 -5.7596 -6.1794 23 6 -5.1476 -6.3834 -1.3430 24 6 -5.2721 -7.5797 -0.7665 25 6 -6.0028 -7.5875 0.4092 26 6 -6.4721 -6.3975 0.7871 27 16 -5.9794 -5.1730 -0.3753 28 6 0.0881 -2.4315 -0.9319 29 1 -0.4850 0.8400 0.0004 30 1 2.8050 -3.7045 0.6775 31 1 1.5741 -5.7603 0.2027 32 1 -2.1283 -2.8631 -2.2080 33 1 -4.0598 -4.0240 -2.8257 34 1 -6.0425 -5.1410 -3.6312 35 1 -6.0077 -6.9109 -3.8171 36 1 -4.0268 -4.9511 -5.0628 37 1 -3.9921 -6.7209 -5.2487 38 1 -5.1515 -5.6607 -7.0475 39 1 -4.8352 -8.4745 -1.1849 40 1 -6.1794 -8.4888 0.9774 41 1 -7.0608 -6.2135 1.6736 42 1 -0.3615 -1.5083 -1.2668 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871724167.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:17 Heat of formation + Delta-G solvation = -26.469488 kcal Electronic energy + Delta-G solvation = -27250.810991 eV Core-core repulsion = 23321.903090 eV Total energy + Delta-G solvation = -3928.907901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.50401 -40.06106 -38.89869 -37.99783 -36.49778 -35.96562 -35.47237 -32.75156 -32.28281 -30.46821 -30.08269 -27.91830 -26.56588 -24.23155 -23.82190 -23.56064 -22.25249 -21.78229 -20.31964 -19.64284 -19.41110 -18.56484 -18.26904 -17.46533 -17.06648 -16.69025 -16.47584 -16.13022 -16.01056 -15.89212 -15.58894 -15.15919 -14.95955 -14.67853 -14.38021 -14.27264 -14.08621 -13.69686 -13.55997 -13.16247 -13.07971 -13.00056 -12.84529 -12.68810 -12.53770 -12.11372 -12.02712 -11.86196 -11.68826 -11.52083 -11.26988 -11.17536 -10.91953 -10.31396 -9.90924 -9.63799 -9.57251 -9.36357 -8.81538 -8.57284 -6.56586 0.05210 0.69610 0.86442 1.02600 1.09890 1.42323 1.56221 1.57176 1.58609 1.88079 2.20886 2.28367 2.85464 3.10454 3.18527 3.77059 3.82032 3.97768 4.11023 4.15822 4.22326 4.32853 4.47389 4.59807 4.63057 4.68760 4.74074 4.87490 4.91405 4.95670 5.06406 5.12002 5.14911 5.28844 5.35525 5.41338 5.53058 5.60265 5.67635 5.82739 6.00839 6.27896 6.59114 6.81417 6.85359 6.85970 6.96829 7.62295 7.92451 8.27732 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011940 B = 0.002773 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.570291 B =10093.458251 C =10613.285565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.037 3.963 3 Si 0.990 3.010 4 H -0.259 1.259 5 H -0.261 1.261 6 H -0.267 1.267 7 C -0.478 4.478 8 H 0.083 0.917 9 C 0.111 3.889 10 C -0.299 4.299 11 C 0.113 3.887 12 N -0.577 5.577 13 C 0.352 3.648 14 N -0.660 5.660 15 C 0.695 3.305 16 O -0.570 6.570 17 N -0.728 5.728 18 C 0.246 3.754 19 H 0.093 0.907 20 C -0.110 4.110 21 C 0.078 3.922 22 O -0.589 6.589 23 C -0.196 4.196 24 C -0.140 4.140 25 C -0.142 4.142 26 C -0.222 4.222 27 S 0.093 5.907 28 C -0.267 4.267 29 H 0.291 0.709 30 H 0.114 0.886 31 H 0.145 0.855 32 H 0.419 0.581 33 H 0.408 0.592 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.399 0.601 39 H 0.148 0.852 40 H 0.161 0.839 41 H 0.184 0.816 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.354 -5.650 -7.327 17.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.180 4.180 3 Si 0.810 3.190 4 H -0.183 1.183 5 H -0.186 1.186 6 H -0.191 1.191 7 C -0.508 4.508 8 H 0.101 0.899 9 C 0.103 3.897 10 C -0.323 4.323 11 C -0.040 4.040 12 N -0.297 5.297 13 C 0.125 3.875 14 N -0.309 5.309 15 C 0.395 3.605 16 O -0.443 6.443 17 N -0.386 5.386 18 C 0.138 3.862 19 H 0.111 0.889 20 C -0.148 4.148 21 C 0.000 4.000 22 O -0.398 6.398 23 C -0.315 4.315 24 C -0.171 4.171 25 C -0.172 4.172 26 C -0.357 4.357 27 S 0.356 5.644 28 C -0.293 4.293 29 H 0.103 0.897 30 H 0.132 0.868 31 H 0.162 0.838 32 H 0.256 0.744 33 H 0.245 0.755 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.249 0.751 39 H 0.166 0.834 40 H 0.178 0.822 41 H 0.201 0.799 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.279 -5.781 -6.762 17.680 hybrid contribution 1.215 0.647 -0.041 1.377 sum -14.064 -5.135 -6.803 16.445 Atomic orbital electron populations 1.69770 1.08913 1.30673 1.34353 1.26834 0.95669 1.04586 0.90884 0.85035 0.79258 0.75670 0.79024 1.18260 1.18561 1.19138 1.19929 0.96731 0.91147 1.43034 0.89934 1.18012 0.91324 0.93262 0.87144 1.21820 1.04343 0.93949 1.12210 1.21876 0.90073 0.97655 0.94440 1.67324 1.13929 1.28132 1.20334 1.18183 0.86072 0.90278 0.92984 1.42415 1.19508 1.11080 1.57871 1.16156 0.81329 0.83779 0.79231 1.90989 1.68924 1.31841 1.52561 1.45148 1.16084 1.11546 1.65843 1.19039 0.91255 0.86554 0.89315 0.88867 1.21686 0.97175 1.05112 0.90830 1.22086 0.90871 1.00607 0.86397 1.86385 1.37328 1.96927 1.19125 1.25103 1.06479 0.97108 1.02828 1.20364 1.01760 0.98350 0.96640 1.20424 0.99986 0.99337 0.97453 1.25954 1.08669 0.95862 1.05251 1.84185 1.49517 1.12437 1.18215 1.21765 1.01105 0.95851 1.10556 0.89742 0.86828 0.83762 0.74430 0.75532 0.89870 0.88629 0.92985 0.93124 0.75132 0.83449 0.82197 0.79915 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.19 10.50 21.84 0.23 -38.96 16 2 C 0.04 1.74 5.31 85.29 0.45 2.19 16 3 Si 0.99 35.57 29.58 68.60 2.03 37.60 16 4 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 5 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 6 H -0.27 -9.25 7.11 99.48 0.71 -8.55 16 7 C -0.48 -24.68 9.15 23.52 0.22 -24.46 16 8 H 0.08 4.09 7.88 -2.91 -0.02 4.07 16 9 C 0.11 5.95 5.65 -21.11 -0.12 5.83 16 10 C -0.30 -15.03 9.85 22.60 0.22 -14.81 16 11 C 0.11 5.55 11.10 84.27 0.94 6.49 16 12 N -0.58 -30.21 7.86 -194.26 -1.53 -31.73 16 13 C 0.35 17.40 7.42 132.76 0.98 18.38 16 14 N -0.66 -25.91 5.40 -322.36 -1.74 -27.65 16 15 C 0.70 26.21 8.48 179.06 1.52 27.73 16 16 O -0.57 -26.78 14.26 -3.99 -0.06 -26.83 16 17 N -0.73 -18.96 4.29 -461.42 -1.98 -20.94 16 18 C 0.25 5.80 2.40 44.25 0.11 5.91 16 19 H 0.09 2.52 7.56 -2.39 -0.02 2.50 16 20 C -0.11 -1.94 5.10 30.60 0.16 -1.78 16 21 C 0.08 1.30 6.93 71.98 0.50 1.80 16 22 O -0.59 -9.57 13.66 -148.98 -2.04 -11.60 16 23 C -0.20 -4.99 5.42 24.59 0.13 -4.86 16 24 C -0.14 -3.43 10.04 21.22 0.21 -3.22 16 25 C -0.14 -3.12 10.18 21.22 0.22 -2.90 16 26 C -0.22 -4.86 11.23 66.72 0.75 -4.11 16 27 S 0.09 2.26 23.06 -56.49 -1.30 0.96 16 28 C -0.27 -13.77 8.67 23.00 0.20 -13.57 16 29 H 0.29 12.50 8.29 -92.71 -0.77 11.73 16 30 H 0.11 5.21 8.06 -2.91 -0.02 5.19 16 31 H 0.15 6.18 8.06 -2.91 -0.02 6.16 16 32 H 0.42 13.28 8.72 -92.71 -0.81 12.47 16 33 H 0.41 8.20 8.62 -92.71 -0.80 7.40 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.05 0.85 7.75 -2.39 -0.02 0.83 16 37 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.40 3.10 9.12 -74.06 -0.68 2.43 16 39 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 40 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 41 H 0.18 3.03 8.06 -2.91 -0.02 3.00 16 42 H 0.14 6.95 5.81 -2.91 -0.02 6.93 16 Total: -1.00 -72.35 375.32 -1.08 -73.44 By element: Atomic # 1 Polarization: 48.29 SS G_CDS: -1.18 Total: 47.11 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 6.48 Total: -1.40 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -5.02 Total: -119.28 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -2.09 Total: -38.44 kcal Atomic # 14 Polarization: 35.57 SS G_CDS: 2.03 Total: 37.60 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.30 Total: 0.96 kcal Total: -72.35 -1.08 -73.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871724167.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.967 kcal (2) G-P(sol) polarization free energy of solvation -72.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds