Wall clock time and date at job start Wed Apr 1 2020 05:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32155 * 119.99995 * 2 1 4 4 C 1.32123 * 119.99750 * 180.27882 * 3 2 1 5 5 C 1.38391 * 119.99783 * 359.73458 * 4 3 2 6 6 N 1.32127 * 120.00009 * 0.02562 * 5 4 3 7 7 C 1.32149 * 119.99745 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99896 * 179.97438 * 7 6 5 9 9 H 1.09008 * 109.47545 * 159.83999 * 8 7 6 10 10 C 1.53001 * 109.46993 * 279.83441 * 8 7 6 11 11 N 1.46502 * 109.47535 * 39.83478 * 8 7 6 12 12 S 1.65591 * 120.00169 * 146.42791 * 11 8 7 13 13 O 1.42097 * 106.40684 * 312.70644 * 12 11 8 14 14 O 1.42101 * 106.40242 * 179.78768 * 12 11 8 15 15 C 1.76199 * 107.21956 * 66.24941 * 12 11 8 16 16 C 1.37641 * 120.12831 * 244.57113 * 15 12 11 17 17 C 1.38620 * 120.24787 * 180.31900 * 16 15 12 18 18 C 1.38652 * 120.49925 * 359.66556 * 17 16 15 19 19 C 1.37589 * 120.25336 * 0.02562 * 18 17 16 20 20 C 1.40699 * 120.13151 * 64.25660 * 15 12 11 21 21 C 1.41396 * 120.23824 * 359.97438 * 20 15 12 22 22 H 1.07993 * 120.00403 * 328.77744 * 21 20 15 23 23 C 1.39951 * 119.99642 * 148.77978 * 21 20 15 24 24 N 1.30823 * 120.00179 * 337.57344 * 23 21 20 25 25 Si 1.86804 * 119.99948 * 157.58108 * 23 21 20 26 26 H 1.48496 * 109.47151 * 184.99092 * 25 23 21 27 27 H 1.48501 * 109.46836 * 304.99273 * 25 23 21 28 28 H 1.48504 * 109.46955 * 64.98993 * 25 23 21 29 29 H 1.09004 * 109.47243 * 264.16838 * 1 2 3 30 30 H 1.09005 * 109.47112 * 24.16053 * 1 2 3 31 31 H 1.08997 * 109.47462 * 144.16671 * 1 2 3 32 32 H 1.08000 * 120.00476 * 179.71477 * 4 3 2 33 33 H 1.08012 * 120.00333 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.47119 * 300.00093 * 10 8 7 35 35 H 1.08997 * 109.47205 * 59.99802 * 10 8 7 36 36 H 1.09000 * 109.47054 * 179.97438 * 10 8 7 37 37 H 0.97001 * 119.99517 * 326.43348 * 11 8 7 38 38 H 1.08005 * 119.87895 * 0.02562 * 16 15 12 39 39 H 1.08004 * 119.74450 * 179.68984 * 17 16 15 40 40 H 1.08005 * 119.87333 * 180.02562 * 18 17 16 41 41 H 1.07998 * 120.13307 * 180.02562 * 19 18 17 42 42 H 0.97005 * 119.99780 * 354.34281 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4890 1.1444 -0.0056 5 6 4.1808 -0.0541 -0.0058 6 7 3.5201 -1.1983 -0.0011 7 6 2.1987 -1.1982 0.0045 8 6 1.4451 -2.5031 0.0094 9 1 0.4294 -2.3350 0.3676 10 6 1.3974 -3.0698 -1.4110 11 7 2.1230 -3.4554 0.8925 12 16 1.2395 -4.5616 1.7515 13 8 0.1708 -3.8427 2.3517 14 8 2.1742 -5.3302 2.4965 15 6 0.5068 -5.6618 0.5866 16 6 -0.8619 -5.7120 0.4498 17 6 -1.4412 -6.5814 -0.4612 18 6 -0.6510 -7.4043 -1.2491 19 6 0.7195 -7.3666 -1.1339 20 6 1.3188 -6.4878 -0.2122 21 6 2.7262 -6.4397 -0.0856 22 1 3.2123 -5.5160 0.1912 23 6 3.4894 -7.5894 -0.3189 24 7 2.9383 -8.7717 -0.2198 25 14 5.2952 -7.4357 -0.7718 26 1 5.8436 -8.7801 -1.0831 27 1 5.4343 -6.5568 -1.9607 28 1 6.0432 -6.8479 0.3686 29 1 -0.3634 -0.1044 1.0224 30 1 -0.3633 0.9377 -0.4206 31 1 -0.3634 -0.8331 -0.6016 32 1 4.0291 2.0797 -0.0102 33 1 5.2610 -0.0543 -0.0108 34 1 0.8930 -2.3614 -2.0681 35 1 2.4130 -3.2380 -1.7693 36 1 0.8527 -4.0140 -1.4074 37 1 3.0894 -3.4377 0.9741 38 1 -1.4870 -5.0749 1.0580 39 1 -2.5163 -6.6176 -0.5583 40 1 -1.1131 -8.0776 -1.9560 41 1 1.3332 -8.0081 -1.7488 42 1 2.0245 -8.8560 0.0947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872638916.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:09 Heat of formation + Delta-G solvation = -19.965209 kcal Electronic energy + Delta-G solvation = -29088.847691 eV Core-core repulsion = 25160.221837 eV Total energy + Delta-G solvation = -3928.625854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.33475 -37.89583 -36.63302 -36.15547 -34.92095 -34.54233 -34.08648 -32.41100 -30.24145 -29.55323 -29.19306 -28.15151 -25.37503 -25.09614 -22.97991 -21.86710 -21.56802 -21.18951 -18.97513 -18.32530 -17.73713 -17.29334 -16.54101 -16.18155 -15.79705 -15.23890 -15.02259 -14.87756 -14.42878 -14.15575 -13.81219 -13.69646 -13.40281 -13.21930 -12.90722 -12.87010 -12.67331 -12.42457 -12.31832 -11.97822 -11.64422 -11.59320 -11.29887 -11.23973 -11.20901 -11.17131 -11.11014 -11.03815 -10.87003 -10.54306 -10.49024 -9.84909 -9.68194 -9.26907 -9.20652 -9.14790 -8.82246 -8.24362 -7.83175 -7.46540 -4.84750 0.63496 1.04572 1.44913 2.18738 2.62712 3.08697 3.17684 3.27375 3.52492 3.79256 3.87927 3.88404 4.06879 4.32513 4.39475 4.54326 4.66283 4.96090 5.05762 5.08633 5.19655 5.33569 5.38714 5.46526 5.49072 5.58499 5.70759 5.83992 5.89343 6.02914 6.08946 6.24167 6.25443 6.34588 6.58914 6.61980 6.85468 7.09781 7.20414 7.25319 7.33541 7.48895 7.56717 7.61569 7.72446 7.80129 7.95368 8.32697 8.55853 9.80557 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011361 B = 0.004823 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.942483 B = 5804.674445 C = 7036.104625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.088 3.912 3 N -0.439 5.439 4 C 0.045 3.955 5 C 0.045 3.955 6 N -0.422 5.422 7 C 0.089 3.911 8 C 0.209 3.791 9 H 0.107 0.893 10 C -0.169 4.169 11 N -1.110 6.110 12 S 2.699 3.301 13 O -0.998 6.998 14 O -0.961 6.961 15 C -0.778 4.778 16 C 0.011 3.989 17 C -0.261 4.261 18 C -0.056 4.056 19 C -0.207 4.207 20 C 0.168 3.832 21 C -0.496 4.496 22 H 0.088 0.912 23 C 0.044 3.956 24 N -0.775 5.775 25 Si 1.062 2.938 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.268 1.268 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.168 0.832 33 H 0.170 0.830 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.419 0.581 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.468 13.575 -3.471 14.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.053 4.053 3 N -0.154 5.154 4 C -0.115 4.115 5 C -0.115 4.115 6 N -0.137 5.137 7 C -0.054 4.054 8 C 0.099 3.901 9 H 0.125 0.875 10 C -0.228 4.228 11 N -0.866 5.866 12 S 2.796 3.204 13 O -0.989 6.989 14 O -0.952 6.952 15 C -0.873 4.873 16 C -0.009 4.009 17 C -0.282 4.282 18 C -0.075 4.075 19 C -0.227 4.227 20 C 0.163 3.837 21 C -0.523 4.523 22 H 0.106 0.894 23 C -0.180 4.180 24 N -0.396 5.396 25 Si 0.884 3.116 26 H -0.195 1.195 27 H -0.196 1.196 28 H -0.193 1.193 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.185 0.815 33 H 0.187 0.813 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.254 0.746 38 H 0.127 0.873 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.127 0.873 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.533 12.638 -2.942 13.066 hybrid contribution -0.996 0.610 -0.317 1.210 sum 0.537 13.248 -3.259 13.653 Atomic orbital electron populations 1.20857 0.87594 1.04245 1.04225 1.22094 0.98544 0.88759 0.95881 1.68308 1.08980 1.28928 1.09217 1.23735 0.90838 0.99842 0.97120 1.23776 1.01932 0.88662 0.97125 1.68142 1.08070 1.29817 1.07638 1.22225 0.90931 0.96141 0.96100 1.19545 0.94762 0.83483 0.92276 0.87499 1.22345 1.04022 1.02356 0.94079 1.55716 1.20058 1.49027 1.61829 1.01132 0.72740 0.72722 0.73763 1.93443 1.56525 1.73457 1.75460 1.93553 1.62725 1.69592 1.69289 1.29840 1.02677 1.27895 1.26908 1.20327 0.92671 0.94249 0.93636 1.20447 0.97656 1.05012 1.05071 1.20832 0.94141 0.96004 0.96518 1.21315 0.94001 1.05010 1.02350 1.16961 0.92089 0.88013 0.86669 1.20892 0.91620 1.00149 1.39662 0.89404 1.27088 1.07972 0.91238 0.91741 1.70448 1.18059 1.25413 1.25701 0.83684 0.72242 0.77544 0.78147 1.19517 1.19597 1.19345 0.89220 0.89934 0.89604 0.81478 0.81304 0.92245 0.91111 0.89562 0.74572 0.87261 0.88522 0.88659 0.87304 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.17 36.01 0.33 -0.83 16 2 C 0.09 1.14 6.79 -82.41 -0.56 0.59 16 3 N -0.44 -5.49 10.42 -9.29 -0.10 -5.59 16 4 C 0.04 0.45 11.23 -17.37 -0.19 0.26 16 5 C 0.04 0.49 11.23 -17.37 -0.19 0.29 16 6 N -0.42 -5.97 9.64 -9.28 -0.09 -6.06 16 7 C 0.09 1.27 5.77 -82.42 -0.48 0.80 16 8 C 0.21 3.23 2.67 -69.08 -0.18 3.04 16 9 H 0.11 1.56 5.64 -51.92 -0.29 1.27 16 10 C -0.17 -2.54 9.50 37.16 0.35 -2.19 16 11 N -1.11 -20.02 4.56 -5.88 -0.03 -20.04 16 12 S 2.70 58.20 4.96 -107.50 -0.53 57.67 16 13 O -1.00 -21.95 16.26 -57.17 -0.93 -22.88 16 14 O -0.96 -24.04 16.69 -57.17 -0.95 -24.99 16 15 C -0.78 -17.56 4.78 -38.87 -0.19 -17.75 16 16 C 0.01 0.23 9.53 -39.66 -0.38 -0.14 16 17 C -0.26 -5.32 10.05 -39.29 -0.39 -5.71 16 18 C -0.06 -1.17 10.02 -39.67 -0.40 -1.57 16 19 C -0.21 -4.79 7.93 -38.88 -0.31 -5.10 16 20 C 0.17 4.02 4.88 -106.82 -0.52 3.50 16 21 C -0.50 -12.07 7.51 -37.74 -0.28 -12.35 16 22 H 0.09 2.03 5.87 -52.49 -0.31 1.73 16 23 C 0.04 1.06 4.98 -17.34 -0.09 0.98 16 24 N -0.77 -19.55 12.48 55.55 0.69 -18.86 16 25 Si 1.06 20.65 29.99 -169.99 -5.10 15.55 16 26 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 27 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 28 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.80 6.87 -51.93 -0.36 0.45 16 32 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.17 1.25 8.06 -52.48 -0.42 0.82 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.09 1.47 6.57 -51.93 -0.34 1.13 16 37 H 0.42 7.35 7.85 -34.47 -0.27 7.08 16 38 H 0.11 2.13 7.33 -52.48 -0.38 1.74 16 39 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 40 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 41 H 0.11 2.56 6.81 -52.49 -0.36 2.21 16 42 H 0.30 7.86 6.69 -40.82 -0.27 7.59 16 LS Contribution 360.76 15.07 5.44 5.44 Total: -1.00 -31.09 360.76 -9.84 -40.93 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -4.76 Total: 15.01 kcal Atomic # 6 Polarization: -32.70 SS G_CDS: -3.48 Total: -36.19 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.48 Total: -50.55 kcal Atomic # 8 Polarization: -45.99 SS G_CDS: -1.88 Total: -47.87 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.10 Total: 15.55 kcal Atomic # 16 Polarization: 58.20 SS G_CDS: -0.53 Total: 57.67 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.09 -9.84 -40.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872638916.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.968 kcal (2) G-P(sol) polarization free energy of solvation -31.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds