Wall clock time and date at job start Wed Apr 1 2020 05:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32155 * 119.99995 * 2 1 4 4 C 1.32123 * 119.99750 * 180.27882 * 3 2 1 5 5 C 1.38391 * 119.99783 * 359.73458 * 4 3 2 6 6 N 1.32127 * 120.00009 * 0.02562 * 5 4 3 7 7 C 1.32149 * 119.99745 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99896 * 179.97438 * 7 6 5 9 9 H 1.09008 * 109.47545 * 159.83999 * 8 7 6 10 10 C 1.53001 * 109.46993 * 279.83441 * 8 7 6 11 11 N 1.46502 * 109.47535 * 39.83478 * 8 7 6 12 12 S 1.65591 * 120.00169 * 146.42791 * 11 8 7 13 13 O 1.42097 * 106.40684 * 312.70644 * 12 11 8 14 14 O 1.42101 * 106.40242 * 179.78768 * 12 11 8 15 15 C 1.76199 * 107.21956 * 66.24941 * 12 11 8 16 16 C 1.37641 * 120.12831 * 244.57113 * 15 12 11 17 17 C 1.38620 * 120.24787 * 180.31900 * 16 15 12 18 18 C 1.38652 * 120.49925 * 359.66556 * 17 16 15 19 19 C 1.37589 * 120.25336 * 0.02562 * 18 17 16 20 20 C 1.40699 * 120.13151 * 64.25660 * 15 12 11 21 21 C 1.41396 * 120.23824 * 359.97438 * 20 15 12 22 22 H 1.07993 * 120.00403 * 328.77744 * 21 20 15 23 23 C 1.39951 * 119.99642 * 148.77978 * 21 20 15 24 24 N 1.30823 * 120.00179 * 337.57344 * 23 21 20 25 25 Si 1.86804 * 119.99948 * 157.58108 * 23 21 20 26 26 H 1.48496 * 109.47151 * 184.99092 * 25 23 21 27 27 H 1.48501 * 109.46836 * 304.99273 * 25 23 21 28 28 H 1.48504 * 109.46955 * 64.98993 * 25 23 21 29 29 H 1.09004 * 109.47243 * 264.16838 * 1 2 3 30 30 H 1.09005 * 109.47112 * 24.16053 * 1 2 3 31 31 H 1.08997 * 109.47462 * 144.16671 * 1 2 3 32 32 H 1.08000 * 120.00476 * 179.71477 * 4 3 2 33 33 H 1.08012 * 120.00333 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.47119 * 300.00093 * 10 8 7 35 35 H 1.08997 * 109.47205 * 59.99802 * 10 8 7 36 36 H 1.09000 * 109.47054 * 179.97438 * 10 8 7 37 37 H 0.97001 * 119.99517 * 326.43348 * 11 8 7 38 38 H 1.08005 * 119.87895 * 0.02562 * 16 15 12 39 39 H 1.08004 * 119.74450 * 179.68984 * 17 16 15 40 40 H 1.08005 * 119.87333 * 180.02562 * 18 17 16 41 41 H 1.07998 * 120.13307 * 180.02562 * 19 18 17 42 42 H 0.97005 * 119.99780 * 354.34281 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4890 1.1444 -0.0056 5 6 4.1808 -0.0541 -0.0058 6 7 3.5201 -1.1983 -0.0011 7 6 2.1987 -1.1982 0.0045 8 6 1.4451 -2.5031 0.0094 9 1 0.4294 -2.3350 0.3676 10 6 1.3974 -3.0698 -1.4110 11 7 2.1230 -3.4554 0.8925 12 16 1.2395 -4.5616 1.7515 13 8 0.1708 -3.8427 2.3517 14 8 2.1742 -5.3302 2.4965 15 6 0.5068 -5.6618 0.5866 16 6 -0.8619 -5.7120 0.4498 17 6 -1.4412 -6.5814 -0.4612 18 6 -0.6510 -7.4043 -1.2491 19 6 0.7195 -7.3666 -1.1339 20 6 1.3188 -6.4878 -0.2122 21 6 2.7262 -6.4397 -0.0856 22 1 3.2123 -5.5160 0.1912 23 6 3.4894 -7.5894 -0.3189 24 7 2.9383 -8.7717 -0.2198 25 14 5.2952 -7.4357 -0.7718 26 1 5.8436 -8.7801 -1.0831 27 1 5.4343 -6.5568 -1.9607 28 1 6.0432 -6.8479 0.3686 29 1 -0.3634 -0.1044 1.0224 30 1 -0.3633 0.9377 -0.4206 31 1 -0.3634 -0.8331 -0.6016 32 1 4.0291 2.0797 -0.0102 33 1 5.2610 -0.0543 -0.0108 34 1 0.8930 -2.3614 -2.0681 35 1 2.4130 -3.2380 -1.7693 36 1 0.8527 -4.0140 -1.4074 37 1 3.0894 -3.4377 0.9741 38 1 -1.4870 -5.0749 1.0580 39 1 -2.5163 -6.6176 -0.5583 40 1 -1.1131 -8.0776 -1.9560 41 1 1.3332 -8.0081 -1.7488 42 1 2.0245 -8.8560 0.0947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872638916.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:08 Heat of formation + Delta-G solvation = -41.420551 kcal Electronic energy + Delta-G solvation = -29089.778065 eV Core-core repulsion = 25160.221837 eV Total energy + Delta-G solvation = -3929.556228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.25253 -39.62590 -38.21131 -37.59213 -36.75250 -35.84410 -35.45147 -33.47210 -31.97316 -31.27128 -30.47791 -28.99030 -27.15117 -26.11582 -23.88235 -23.55167 -23.03150 -22.63954 -20.51558 -20.05710 -18.99561 -18.60169 -18.03892 -17.48873 -16.97527 -16.63014 -16.39374 -16.17123 -15.84412 -15.69327 -15.38491 -15.07248 -14.85190 -14.55770 -14.32098 -14.03619 -13.75157 -13.71034 -13.44786 -13.30527 -13.22677 -13.07360 -12.97986 -12.90989 -12.74493 -12.65908 -12.53449 -12.25494 -12.15345 -12.02253 -11.99859 -11.57113 -11.28022 -10.99674 -10.56350 -10.06778 -9.99774 -9.90547 -9.59263 -9.29749 -6.67819 -0.35877 -0.14711 0.14014 0.43700 0.89142 1.49042 1.62229 1.76146 2.20469 2.28685 2.59698 2.68176 2.91924 2.95270 3.20017 3.32813 3.49449 3.59783 3.77332 4.01104 4.12977 4.23626 4.28197 4.34399 4.36730 4.43480 4.45926 4.65979 4.68588 4.77714 4.83702 4.85180 5.02742 5.10852 5.16236 5.29881 5.33518 5.46948 5.50628 5.62034 5.70272 5.86805 6.01408 6.09763 6.19594 6.32370 6.56290 6.78638 6.81438 7.94222 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011361 B = 0.004823 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.942483 B = 5804.674445 C = 7036.104625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.081 3.919 3 N -0.455 5.455 4 C 0.057 3.943 5 C 0.042 3.958 6 N -0.451 5.451 7 C 0.066 3.934 8 C 0.206 3.794 9 H 0.114 0.886 10 C -0.162 4.162 11 N -1.102 6.102 12 S 2.715 3.285 13 O -1.004 7.004 14 O -1.001 7.001 15 C -0.785 4.785 16 C -0.001 4.001 17 C -0.253 4.253 18 C -0.053 4.053 19 C -0.230 4.230 20 C 0.155 3.845 21 C -0.527 4.527 22 H 0.090 0.910 23 C 0.010 3.990 24 N -0.802 5.802 25 Si 1.101 2.899 26 H -0.269 1.269 27 H -0.252 1.252 28 H -0.262 1.262 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.209 0.791 33 H 0.203 0.797 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.421 0.579 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.125 0.875 41 H 0.096 0.904 42 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.220 15.822 -4.305 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.059 4.059 3 N -0.171 5.171 4 C -0.104 4.104 5 C -0.118 4.118 6 N -0.166 5.166 7 C -0.076 4.076 8 C 0.098 3.902 9 H 0.131 0.869 10 C -0.221 4.221 11 N -0.861 5.861 12 S 2.812 3.188 13 O -0.994 6.994 14 O -0.992 6.992 15 C -0.880 4.880 16 C -0.021 4.021 17 C -0.273 4.273 18 C -0.071 4.071 19 C -0.250 4.250 20 C 0.150 3.850 21 C -0.555 4.555 22 H 0.107 0.893 23 C -0.209 4.209 24 N -0.424 5.424 25 Si 0.918 3.082 26 H -0.193 1.193 27 H -0.176 1.176 28 H -0.186 1.186 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.225 0.775 33 H 0.220 0.780 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.257 0.743 38 H 0.146 0.854 39 H 0.150 0.850 40 H 0.143 0.857 41 H 0.114 0.886 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.236 14.877 -3.784 15.400 hybrid contribution -1.030 0.090 -0.053 1.035 sum 0.206 14.967 -3.836 15.452 Atomic orbital electron populations 1.20949 0.86349 1.05344 1.04520 1.22323 0.99550 0.88435 0.95570 1.68408 1.10180 1.28544 1.09937 1.24435 0.90257 1.01299 0.94403 1.24387 1.03470 0.87973 0.95979 1.68074 1.08274 1.31800 1.08414 1.21966 0.91302 0.95686 0.98629 1.19695 0.95139 0.83757 0.91642 0.86873 1.22252 1.03266 1.01920 0.94638 1.55384 1.19937 1.48672 1.62083 1.00469 0.72277 0.72540 0.73496 1.93424 1.56823 1.73373 1.75819 1.93496 1.63811 1.71044 1.70800 1.30033 1.03538 1.27983 1.26406 1.20666 0.92327 0.94839 0.94219 1.20886 0.99459 1.03367 1.03540 1.21199 0.93321 0.95971 0.96627 1.21340 0.95148 1.05619 1.02871 1.17187 0.92442 0.88428 0.86905 1.21046 0.92234 1.00503 1.41713 0.89255 1.28312 1.11099 0.90780 0.90689 1.70556 1.17348 1.26074 1.28390 0.83232 0.68227 0.77942 0.78818 1.19292 1.17583 1.18645 0.89185 0.88558 0.88878 0.77451 0.78036 0.89524 0.92223 0.91847 0.74321 0.85440 0.85004 0.85677 0.88599 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 9.17 71.24 0.65 -1.54 16 2 C 0.08 1.97 6.79 42.54 0.29 2.26 16 3 N -0.46 -10.30 10.42 -183.29 -1.91 -12.21 16 4 C 0.06 0.97 11.23 84.69 0.95 1.92 16 5 C 0.04 0.81 11.23 84.68 0.95 1.76 16 6 N -0.45 -12.19 9.64 -183.29 -1.77 -13.96 16 7 C 0.07 1.81 5.77 42.54 0.25 2.06 16 8 C 0.21 6.28 2.67 44.24 0.12 6.40 16 9 H 0.11 3.24 5.64 -2.38 -0.01 3.22 16 10 C -0.16 -4.82 9.50 71.98 0.68 -4.14 16 11 N -1.10 -40.15 4.56 -172.51 -0.79 -40.94 16 12 S 2.72 118.60 4.96 -56.49 -0.28 118.32 16 13 O -1.00 -43.87 16.26 -128.00 -2.08 -45.96 16 14 O -1.00 -51.53 16.69 -128.00 -2.14 -53.67 16 15 C -0.78 -35.69 4.78 22.73 0.11 -35.58 16 16 C 0.00 -0.03 9.53 22.22 0.21 0.18 16 17 C -0.25 -9.69 10.05 22.46 0.23 -9.47 16 18 C -0.05 -2.13 10.02 22.22 0.22 -1.91 16 19 C -0.23 -10.81 7.93 22.73 0.18 -10.63 16 20 C 0.16 7.61 4.88 -21.29 -0.10 7.51 16 21 C -0.53 -26.49 7.51 23.46 0.18 -26.31 16 22 H 0.09 4.29 5.87 -2.91 -0.02 4.28 16 23 C 0.01 0.48 4.98 85.26 0.42 0.91 16 24 N -0.80 -42.04 12.48 21.83 0.27 -41.77 16 25 Si 1.10 42.19 29.99 68.60 2.06 44.24 16 26 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 27 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 28 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 29 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.09 1.60 6.87 -2.39 -0.02 1.58 16 32 H 0.21 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.20 2.29 8.06 -2.90 -0.02 2.27 16 34 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.06 2.17 6.57 -2.39 -0.02 2.16 16 37 H 0.42 15.09 7.85 -96.75 -0.76 14.33 16 38 H 0.13 4.73 7.33 -2.91 -0.02 4.71 16 39 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 40 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 41 H 0.10 4.69 6.81 -2.91 -0.02 4.67 16 42 H 0.29 15.63 6.69 -92.70 -0.62 15.01 16 Total: -1.00 -68.71 360.76 -0.83 -69.53 By element: Atomic # 1 Polarization: 42.52 SS G_CDS: 0.47 Total: 42.98 kcal Atomic # 6 Polarization: -71.91 SS G_CDS: 5.34 Total: -66.58 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -4.19 Total: -108.88 kcal Atomic # 8 Polarization: -95.41 SS G_CDS: -4.22 Total: -99.62 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.06 Total: 44.24 kcal Atomic # 16 Polarization: 118.60 SS G_CDS: -0.28 Total: 118.32 kcal Total: -68.71 -0.83 -69.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872638916.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.114 kcal (2) G-P(sol) polarization free energy of solvation -68.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds