Wall clock time and date at job start Wed Apr 1 2020 05:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38053 * 126.29768 * 2 1 4 4 C 1.47408 * 126.41511 * 0.02562 * 3 2 1 5 5 O 1.21606 * 120.00104 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99776 * 179.97438 * 4 3 2 7 7 C 1.39877 * 119.99916 * 185.27774 * 6 4 3 8 8 C 1.38905 * 120.06804 * 213.20823 * 7 6 4 9 9 C 1.38086 * 119.92404 * 180.02562 * 8 7 6 10 10 C 1.38308 * 120.07130 * 359.97438 * 9 8 7 11 11 C 1.38258 * 120.14456 * 0.02826 * 10 9 8 12 12 S 1.76201 * 119.96471 * 179.97438 * 11 10 9 13 13 C 1.81398 * 102.99936 * 90.00066 * 12 11 10 14 14 O 1.42105 * 102.99923 * 336.14770 * 12 11 10 15 15 C 1.38128 * 120.07297 * 0.23035 * 11 10 9 16 16 C 1.41306 * 107.16746 * 180.26409 * 3 2 1 17 17 N 1.30448 * 108.02198 * 359.61540 * 16 3 2 18 18 N 1.34270 * 126.28798 * 180.02562 * 2 1 3 19 19 C 1.46504 * 125.75420 * 359.94140 * 18 2 1 20 20 C 1.50707 * 109.46806 * 90.00010 * 19 18 2 21 21 H 1.07999 * 119.99953 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99562 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99931 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00042 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47234 * 89.99977 * 24 22 20 26 26 H 1.48504 * 109.47278 * 209.99886 * 24 22 20 27 27 H 1.48500 * 109.47387 * 329.99645 * 24 22 20 28 28 H 1.08998 * 109.47451 * 89.96939 * 1 2 3 29 29 H 1.08993 * 109.47480 * 209.97303 * 1 2 3 30 30 H 1.09001 * 109.46597 * 329.97382 * 1 2 3 31 31 H 0.97007 * 120.00361 * 5.27376 * 6 4 3 32 32 H 1.07999 * 120.03728 * 359.97438 * 8 7 6 33 33 H 1.08003 * 119.96295 * 179.97438 * 9 8 7 34 34 H 1.08004 * 119.92627 * 180.02562 * 10 9 8 35 35 H 1.09004 * 109.46955 * 299.99784 * 13 12 11 36 36 H 1.08991 * 109.47304 * 60.00302 * 13 12 11 37 37 H 1.08997 * 109.46978 * 180.02562 * 13 12 11 38 38 H 1.07998 * 120.03749 * 179.74094 * 15 11 10 39 39 H 1.07997 * 125.98671 * 179.77392 * 16 3 2 40 40 H 1.08999 * 109.47125 * 209.99975 * 19 18 2 41 41 H 1.08996 * 109.47056 * 330.00335 * 19 18 2 42 42 H 0.97001 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1126 0.0000 4 6 1.8862 2.5201 0.0005 5 8 0.6999 2.7878 0.0006 6 7 2.8004 3.5104 0.0010 7 6 2.3886 4.8424 0.1129 8 6 3.0980 5.8469 -0.5331 9 6 2.6891 7.1610 -0.4201 10 6 1.5742 7.4774 0.3348 11 6 0.8659 6.4799 0.9790 12 16 -0.5533 6.8885 1.9399 13 6 -1.9051 6.7874 0.7346 14 8 -0.3259 8.2485 2.2837 15 6 1.2728 5.1641 0.8744 16 6 3.6592 0.6496 -0.0062 17 7 3.6340 -0.6547 -0.0014 18 7 2.3016 -1.0823 -0.0005 19 6 1.8499 -2.4760 0.0001 20 6 1.6939 -2.9540 -1.4206 21 1 1.9100 -2.2866 -2.2417 22 6 1.2763 -4.2437 -1.6720 23 7 1.1396 -4.6608 -2.9117 24 14 0.9032 -5.3982 -0.2517 25 1 -0.5277 -5.2729 0.1254 26 1 1.1860 -6.7968 -0.6631 27 1 1.7546 -5.0429 0.9120 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3634 -0.8901 0.5134 30 1 -0.3632 0.8898 0.5143 31 1 3.7441 3.2994 -0.0763 32 1 3.9689 5.6004 -1.1223 33 1 3.2405 7.9425 -0.9217 34 1 1.2562 8.5059 0.4212 35 1 -1.7266 7.4984 -0.0721 36 1 -1.9526 5.7782 0.3256 37 1 -2.8485 7.0253 1.2259 38 1 0.7216 4.3859 1.3813 39 1 4.5451 1.2672 -0.0113 40 1 2.5850 -3.0959 0.5134 41 1 0.8917 -2.5471 0.5147 42 1 0.8454 -5.5680 -3.0885 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889040029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:05 Heat of formation + Delta-G solvation = 30.686653 kcal Electronic energy + Delta-G solvation = -26894.875069 eV Core-core repulsion = 22968.445644 eV Total energy + Delta-G solvation = -3926.429425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.13869 -40.14018 -38.24702 -35.92906 -34.82235 -33.96681 -32.28854 -31.51666 -31.30762 -29.94140 -28.97853 -27.84039 -26.85396 -23.79783 -23.32926 -22.79949 -21.82242 -19.99105 -19.35916 -18.46901 -17.33634 -17.28070 -17.10695 -16.34324 -15.65640 -15.36256 -15.29910 -15.01592 -14.93462 -14.49692 -14.31120 -14.12326 -13.74819 -13.63443 -13.45804 -13.03714 -12.89418 -12.82245 -12.63899 -12.39059 -12.26569 -12.18737 -11.93479 -11.86250 -11.71124 -11.30338 -10.90320 -10.64915 -10.49528 -10.41311 -10.33531 -9.86899 -9.67469 -9.35989 -8.91070 -8.78594 -8.59127 -8.37905 -8.05608 -6.38929 -4.44398 0.67681 1.12807 1.65975 1.97018 2.46938 2.57940 2.85974 3.05873 3.12973 3.15038 3.28899 3.38120 3.65426 3.80408 4.10076 4.64655 4.79765 4.83978 4.93942 4.95418 5.01039 5.02231 5.08166 5.26567 5.29551 5.36130 5.50344 5.59453 5.71541 5.77743 5.92635 6.00435 6.06924 6.14803 6.15942 6.25818 6.34650 6.39266 6.48276 6.81533 6.87902 7.10899 7.37747 7.43751 8.11561 8.13816 8.26672 8.63554 9.14503 10.73195 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.019748 B = 0.002257 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.528388 B =12400.278068 C =13211.237256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.175 3.825 3 C -0.334 4.334 4 C 0.607 3.393 5 O -0.536 6.536 6 N -0.677 5.677 7 C 0.147 3.853 8 C -0.116 4.116 9 C -0.115 4.115 10 C -0.077 4.077 11 C -0.441 4.441 12 S 1.331 4.669 13 C -0.495 4.495 14 O -0.863 6.863 15 C -0.047 4.047 16 C 0.063 3.937 17 N -0.289 5.289 18 N -0.311 5.311 19 C 0.224 3.776 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.082 3.918 23 N -0.882 5.882 24 Si 0.873 3.127 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.263 1.263 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.410 0.590 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.080 0.920 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.150 0.850 39 H 0.179 0.821 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.779 18.592 9.772 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.038 3.962 3 C -0.349 4.349 4 C 0.399 3.601 5 O -0.413 6.413 6 N -0.321 5.321 7 C 0.051 3.949 8 C -0.137 4.137 9 C -0.135 4.135 10 C -0.097 4.097 11 C -0.538 4.538 12 S 1.529 4.471 13 C -0.652 4.652 14 O -0.858 6.858 15 C -0.068 4.068 16 C -0.125 4.125 17 N -0.108 5.108 18 N -0.088 5.088 19 C 0.105 3.895 20 C -0.585 4.585 21 H 0.100 0.900 22 C -0.123 4.123 23 N -0.518 5.518 24 Si 0.698 3.302 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.188 1.188 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.247 0.753 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.099 0.901 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.167 0.833 39 H 0.196 0.804 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.041 17.493 10.618 20.490 hybrid contribution 0.479 1.131 -1.674 2.076 sum -0.562 18.623 8.944 20.667 Atomic orbital electron populations 1.20631 0.86493 1.03883 1.04406 1.21493 0.95039 0.86303 0.93364 1.19503 0.93278 0.91941 1.30184 1.17376 0.84880 0.83842 0.73992 1.90694 1.16415 1.84072 1.50148 1.43370 1.10987 1.03560 1.74183 1.17788 0.96704 0.83737 0.96649 1.21106 1.01022 0.92676 0.98864 1.21002 0.97127 0.95848 0.99480 1.21029 0.94850 0.98873 0.94974 1.27515 1.15596 0.97943 1.12719 1.69630 0.83540 1.00714 0.93257 1.27728 1.14740 1.08441 1.14296 1.93066 1.82386 1.36255 1.74140 1.20861 0.95842 0.94750 0.95394 1.23776 0.96344 0.92616 0.99751 1.77182 0.98079 1.12320 1.23261 1.48958 1.02745 1.07646 1.49403 1.20191 0.95809 0.73141 1.00310 1.21068 1.48302 0.99243 0.89921 0.90041 1.24792 0.94241 0.97408 0.95894 1.69857 1.44917 1.18289 1.18722 0.86905 0.79546 0.81087 0.82643 1.19438 1.20337 1.18757 0.89325 0.90913 0.88469 0.75350 0.85313 0.85570 0.85741 0.90078 0.86533 0.87657 0.83278 0.80448 0.92625 0.93279 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 9.57 36.00 0.34 -1.14 16 2 C 0.18 3.14 7.01 -81.59 -0.57 2.57 16 3 C -0.33 -5.27 6.13 -105.07 -0.64 -5.91 16 4 C 0.61 8.49 7.55 -12.53 -0.09 8.39 16 5 O -0.54 -8.27 12.53 5.27 0.07 -8.20 16 6 N -0.68 -7.31 5.33 -10.84 -0.06 -7.37 16 7 C 0.15 1.62 6.28 -83.71 -0.53 1.09 16 8 C -0.12 -1.12 9.96 -39.39 -0.39 -1.51 16 9 C -0.11 -1.12 10.04 -39.61 -0.40 -1.52 16 10 C -0.08 -0.86 9.44 -39.55 -0.37 -1.24 16 11 C -0.44 -4.61 5.61 -39.61 -0.22 -4.83 16 12 S 1.33 10.95 14.19 -107.50 -1.52 9.43 16 13 C -0.50 -3.80 10.70 101.05 1.08 -2.72 16 14 O -0.86 -11.99 16.89 -35.23 -0.60 -12.59 16 15 C -0.05 -0.51 8.36 -39.39 -0.33 -0.84 16 16 C 0.06 0.96 11.51 -16.97 -0.20 0.76 16 17 N -0.29 -5.64 12.50 30.86 0.39 -5.25 16 18 N -0.31 -6.35 3.56 -57.77 -0.21 -6.56 16 19 C 0.22 4.91 5.04 -5.19 -0.03 4.88 16 20 C -0.55 -14.37 9.94 -34.44 -0.34 -14.71 16 21 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 22 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 23 N -0.88 -25.11 13.96 55.43 0.77 -24.34 16 24 Si 0.87 18.98 27.47 -169.99 -4.67 14.31 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.26 -5.42 6.54 56.52 0.37 -5.05 16 28 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 29 H 0.07 1.05 7.05 -51.93 -0.37 0.69 16 30 H 0.10 1.34 6.50 -51.93 -0.34 1.01 16 31 H 0.41 3.30 7.79 -40.82 -0.32 2.98 16 32 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.12 1.44 7.45 -52.48 -0.39 1.05 16 35 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 36 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.15 1.50 6.42 -52.49 -0.34 1.16 16 39 H 0.18 1.81 7.51 -52.49 -0.39 1.42 16 40 H 0.06 1.23 7.20 -51.93 -0.37 0.85 16 41 H 0.05 0.98 6.44 -51.93 -0.33 0.64 16 42 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -36.03 371.18 -8.00 -44.02 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -4.98 Total: 5.60 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -2.79 Total: -14.65 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.90 Total: -43.52 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.53 Total: -20.79 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.67 Total: 14.31 kcal Atomic # 16 Polarization: 10.95 SS G_CDS: -1.52 Total: 9.43 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.03 -8.00 -44.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889040029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.711 kcal (2) G-P(sol) polarization free energy of solvation -36.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds