Wall clock time and date at job start Wed Apr 1 2020 05:11:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.38053 * 126.29768 * 2 1
4 4 C 1.47408 * 126.41511 * 0.02562 * 3 2 1
5 5 O 1.21606 * 120.00104 * 359.97438 * 4 3 2
6 6 N 1.34775 * 119.99776 * 179.97438 * 4 3 2
7 7 C 1.39877 * 119.99916 * 185.27774 * 6 4 3
8 8 C 1.38905 * 120.06804 * 213.20823 * 7 6 4
9 9 C 1.38086 * 119.92404 * 180.02562 * 8 7 6
10 10 C 1.38308 * 120.07130 * 359.97438 * 9 8 7
11 11 C 1.38258 * 120.14456 * 0.02826 * 10 9 8
12 12 S 1.76201 * 119.96471 * 179.97438 * 11 10 9
13 13 C 1.81398 * 102.99936 * 90.00066 * 12 11 10
14 14 O 1.42105 * 102.99923 * 336.14770 * 12 11 10
15 15 C 1.38128 * 120.07297 * 0.23035 * 11 10 9
16 16 C 1.41306 * 107.16746 * 180.26409 * 3 2 1
17 17 N 1.30448 * 108.02198 * 359.61540 * 16 3 2
18 18 N 1.34270 * 126.28798 * 180.02562 * 2 1 3
19 19 C 1.46504 * 125.75420 * 359.94140 * 18 2 1
20 20 C 1.50707 * 109.46806 * 90.00010 * 19 18 2
21 21 H 1.07999 * 119.99953 * 0.02562 * 20 19 18
22 22 C 1.37878 * 119.99562 * 179.97438 * 20 19 18
23 23 N 1.31510 * 119.99931 * 179.97438 * 22 20 19
24 24 Si 1.86797 * 120.00042 * 0.02562 * 22 20 19
25 25 H 1.48506 * 109.47234 * 89.99977 * 24 22 20
26 26 H 1.48504 * 109.47278 * 209.99886 * 24 22 20
27 27 H 1.48500 * 109.47387 * 329.99645 * 24 22 20
28 28 H 1.08998 * 109.47451 * 89.96939 * 1 2 3
29 29 H 1.08993 * 109.47480 * 209.97303 * 1 2 3
30 30 H 1.09001 * 109.46597 * 329.97382 * 1 2 3
31 31 H 0.97007 * 120.00361 * 5.27376 * 6 4 3
32 32 H 1.07999 * 120.03728 * 359.97438 * 8 7 6
33 33 H 1.08003 * 119.96295 * 179.97438 * 9 8 7
34 34 H 1.08004 * 119.92627 * 180.02562 * 10 9 8
35 35 H 1.09004 * 109.46955 * 299.99784 * 13 12 11
36 36 H 1.08991 * 109.47304 * 60.00302 * 13 12 11
37 37 H 1.08997 * 109.46978 * 180.02562 * 13 12 11
38 38 H 1.07998 * 120.03749 * 179.74094 * 15 11 10
39 39 H 1.07997 * 125.98671 * 179.77392 * 16 3 2
40 40 H 1.08999 * 109.47125 * 209.99975 * 19 18 2
41 41 H 1.08996 * 109.47056 * 330.00335 * 19 18 2
42 42 H 0.97001 * 120.00032 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3242 1.1126 0.0000
4 6 1.8862 2.5201 0.0005
5 8 0.6999 2.7878 0.0006
6 7 2.8004 3.5104 0.0010
7 6 2.3886 4.8424 0.1129
8 6 3.0980 5.8469 -0.5331
9 6 2.6891 7.1610 -0.4201
10 6 1.5742 7.4774 0.3348
11 6 0.8659 6.4799 0.9790
12 16 -0.5533 6.8885 1.9399
13 6 -1.9051 6.7874 0.7346
14 8 -0.3259 8.2485 2.2837
15 6 1.2728 5.1641 0.8744
16 6 3.6592 0.6496 -0.0062
17 7 3.6340 -0.6547 -0.0014
18 7 2.3016 -1.0823 -0.0005
19 6 1.8499 -2.4760 0.0001
20 6 1.6939 -2.9540 -1.4206
21 1 1.9100 -2.2866 -2.2417
22 6 1.2763 -4.2437 -1.6720
23 7 1.1396 -4.6608 -2.9117
24 14 0.9032 -5.3982 -0.2517
25 1 -0.5277 -5.2729 0.1254
26 1 1.1860 -6.7968 -0.6631
27 1 1.7546 -5.0429 0.9120
28 1 -0.3634 0.0005 -1.0276
29 1 -0.3634 -0.8901 0.5134
30 1 -0.3632 0.8898 0.5143
31 1 3.7441 3.2994 -0.0763
32 1 3.9689 5.6004 -1.1223
33 1 3.2405 7.9425 -0.9217
34 1 1.2562 8.5059 0.4212
35 1 -1.7266 7.4984 -0.0721
36 1 -1.9526 5.7782 0.3256
37 1 -2.8485 7.0253 1.2259
38 1 0.7216 4.3859 1.3813
39 1 4.5451 1.2672 -0.0113
40 1 2.5850 -3.0959 0.5134
41 1 0.8917 -2.5471 0.5147
42 1 0.8454 -5.5680 -3.0885
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000889040029.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:11:05
Heat of formation + Delta-G solvation = 30.686653 kcal
Electronic energy + Delta-G solvation = -26894.875069 eV
Core-core repulsion = 22968.445644 eV
Total energy + Delta-G solvation = -3926.429425 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.13869 -40.14018 -38.24702 -35.92906 -34.82235 -33.96681 -32.28854 -31.51666
-31.30762 -29.94140 -28.97853 -27.84039 -26.85396 -23.79783 -23.32926 -22.79949
-21.82242 -19.99105 -19.35916 -18.46901 -17.33634 -17.28070 -17.10695 -16.34324
-15.65640 -15.36256 -15.29910 -15.01592 -14.93462 -14.49692 -14.31120 -14.12326
-13.74819 -13.63443 -13.45804 -13.03714 -12.89418 -12.82245 -12.63899 -12.39059
-12.26569 -12.18737 -11.93479 -11.86250 -11.71124 -11.30338 -10.90320 -10.64915
-10.49528 -10.41311 -10.33531 -9.86899 -9.67469 -9.35989 -8.91070 -8.78594
-8.59127 -8.37905 -8.05608 -6.38929 -4.44398 0.67681 1.12807 1.65975
1.97018 2.46938 2.57940 2.85974 3.05873 3.12973 3.15038 3.28899
3.38120 3.65426 3.80408 4.10076 4.64655 4.79765 4.83978 4.93942
4.95418 5.01039 5.02231 5.08166 5.26567 5.29551 5.36130 5.50344
5.59453 5.71541 5.77743 5.92635 6.00435 6.06924 6.14803 6.15942
6.25818 6.34650 6.39266 6.48276 6.81533 6.87902 7.10899 7.37747
7.43751 8.11561 8.13816 8.26672 8.63554 9.14503 10.73195
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.019748 B = 0.002257 C = 0.002119
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1417.528388 B =12400.278068 C =13211.237256
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.096 4.096
2 C 0.175 3.825
3 C -0.334 4.334
4 C 0.607 3.393
5 O -0.536 6.536
6 N -0.677 5.677
7 C 0.147 3.853
8 C -0.116 4.116
9 C -0.115 4.115
10 C -0.077 4.077
11 C -0.441 4.441
12 S 1.331 4.669
13 C -0.495 4.495
14 O -0.863 6.863
15 C -0.047 4.047
16 C 0.063 3.937
17 N -0.289 5.289
18 N -0.311 5.311
19 C 0.224 3.776
20 C -0.547 4.547
21 H 0.082 0.918
22 C 0.082 3.918
23 N -0.882 5.882
24 Si 0.873 3.127
25 H -0.269 1.269
26 H -0.278 1.278
27 H -0.263 1.263
28 H 0.088 0.912
29 H 0.072 0.928
30 H 0.097 0.903
31 H 0.410 0.590
32 H 0.129 0.871
33 H 0.126 0.874
34 H 0.125 0.875
35 H 0.080 0.920
36 H 0.116 0.884
37 H 0.105 0.895
38 H 0.150 0.850
39 H 0.179 0.821
40 H 0.056 0.944
41 H 0.050 0.950
42 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.779 18.592 9.772 21.018
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.038 3.962
3 C -0.349 4.349
4 C 0.399 3.601
5 O -0.413 6.413
6 N -0.321 5.321
7 C 0.051 3.949
8 C -0.137 4.137
9 C -0.135 4.135
10 C -0.097 4.097
11 C -0.538 4.538
12 S 1.529 4.471
13 C -0.652 4.652
14 O -0.858 6.858
15 C -0.068 4.068
16 C -0.125 4.125
17 N -0.108 5.108
18 N -0.088 5.088
19 C 0.105 3.895
20 C -0.585 4.585
21 H 0.100 0.900
22 C -0.123 4.123
23 N -0.518 5.518
24 Si 0.698 3.302
25 H -0.194 1.194
26 H -0.203 1.203
27 H -0.188 1.188
28 H 0.107 0.893
29 H 0.091 0.909
30 H 0.115 0.885
31 H 0.247 0.753
32 H 0.147 0.853
33 H 0.144 0.856
34 H 0.143 0.857
35 H 0.099 0.901
36 H 0.135 0.865
37 H 0.123 0.877
38 H 0.167 0.833
39 H 0.196 0.804
40 H 0.074 0.926
41 H 0.067 0.933
42 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -1.041 17.493 10.618 20.490
hybrid contribution 0.479 1.131 -1.674 2.076
sum -0.562 18.623 8.944 20.667
Atomic orbital electron populations
1.20631 0.86493 1.03883 1.04406 1.21493 0.95039 0.86303 0.93364
1.19503 0.93278 0.91941 1.30184 1.17376 0.84880 0.83842 0.73992
1.90694 1.16415 1.84072 1.50148 1.43370 1.10987 1.03560 1.74183
1.17788 0.96704 0.83737 0.96649 1.21106 1.01022 0.92676 0.98864
1.21002 0.97127 0.95848 0.99480 1.21029 0.94850 0.98873 0.94974
1.27515 1.15596 0.97943 1.12719 1.69630 0.83540 1.00714 0.93257
1.27728 1.14740 1.08441 1.14296 1.93066 1.82386 1.36255 1.74140
1.20861 0.95842 0.94750 0.95394 1.23776 0.96344 0.92616 0.99751
1.77182 0.98079 1.12320 1.23261 1.48958 1.02745 1.07646 1.49403
1.20191 0.95809 0.73141 1.00310 1.21068 1.48302 0.99243 0.89921
0.90041 1.24792 0.94241 0.97408 0.95894 1.69857 1.44917 1.18289
1.18722 0.86905 0.79546 0.81087 0.82643 1.19438 1.20337 1.18757
0.89325 0.90913 0.88469 0.75350 0.85313 0.85570 0.85741 0.90078
0.86533 0.87657 0.83278 0.80448 0.92625 0.93279 0.91901
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.48 9.57 36.00 0.34 -1.14 16
2 C 0.18 3.14 7.01 -81.59 -0.57 2.57 16
3 C -0.33 -5.27 6.13 -105.07 -0.64 -5.91 16
4 C 0.61 8.49 7.55 -12.53 -0.09 8.39 16
5 O -0.54 -8.27 12.53 5.27 0.07 -8.20 16
6 N -0.68 -7.31 5.33 -10.84 -0.06 -7.37 16
7 C 0.15 1.62 6.28 -83.71 -0.53 1.09 16
8 C -0.12 -1.12 9.96 -39.39 -0.39 -1.51 16
9 C -0.11 -1.12 10.04 -39.61 -0.40 -1.52 16
10 C -0.08 -0.86 9.44 -39.55 -0.37 -1.24 16
11 C -0.44 -4.61 5.61 -39.61 -0.22 -4.83 16
12 S 1.33 10.95 14.19 -107.50 -1.52 9.43 16
13 C -0.50 -3.80 10.70 101.05 1.08 -2.72 16
14 O -0.86 -11.99 16.89 -35.23 -0.60 -12.59 16
15 C -0.05 -0.51 8.36 -39.39 -0.33 -0.84 16
16 C 0.06 0.96 11.51 -16.97 -0.20 0.76 16
17 N -0.29 -5.64 12.50 30.86 0.39 -5.25 16
18 N -0.31 -6.35 3.56 -57.77 -0.21 -6.56 16
19 C 0.22 4.91 5.04 -5.19 -0.03 4.88 16
20 C -0.55 -14.37 9.94 -34.44 -0.34 -14.71 16
21 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16
22 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16
23 N -0.88 -25.11 13.96 55.43 0.77 -24.34 16
24 Si 0.87 18.98 27.47 -169.99 -4.67 14.31 16
25 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16
26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16
27 H -0.26 -5.42 6.54 56.52 0.37 -5.05 16
28 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16
29 H 0.07 1.05 7.05 -51.93 -0.37 0.69 16
30 H 0.10 1.34 6.50 -51.93 -0.34 1.01 16
31 H 0.41 3.30 7.79 -40.82 -0.32 2.98 16
32 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16
33 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16
34 H 0.12 1.44 7.45 -52.48 -0.39 1.05 16
35 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16
36 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16
37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16
38 H 0.15 1.50 6.42 -52.49 -0.34 1.16 16
39 H 0.18 1.81 7.51 -52.49 -0.39 1.42 16
40 H 0.06 1.23 7.20 -51.93 -0.37 0.85 16
41 H 0.05 0.98 6.44 -51.93 -0.33 0.64 16
42 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16
LS Contribution 371.18 15.07 5.59 5.59
Total: -1.00 -36.03 371.18 -8.00 -44.02
By element:
Atomic # 1 Polarization: 10.58 SS G_CDS: -4.98 Total: 5.60 kcal
Atomic # 6 Polarization: -11.86 SS G_CDS: -2.79 Total: -14.65 kcal
Atomic # 7 Polarization: -44.41 SS G_CDS: 0.90 Total: -43.52 kcal
Atomic # 8 Polarization: -20.26 SS G_CDS: -0.53 Total: -20.79 kcal
Atomic # 14 Polarization: 18.98 SS G_CDS: -4.67 Total: 14.31 kcal
Atomic # 16 Polarization: 10.95 SS G_CDS: -1.52 Total: 9.43 kcal
Total LS contribution 5.59 Total: 5.59 kcal
Total: -36.03 -8.00 -44.02 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000889040029.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.711 kcal
(2) G-P(sol) polarization free energy of solvation -36.027 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.684 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.025 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.687 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds