Wall clock time and date at job start Wed Apr 1 2020 05:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38053 * 126.29768 * 2 1 4 4 C 1.47408 * 126.41511 * 0.02562 * 3 2 1 5 5 O 1.21606 * 120.00104 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99776 * 179.97438 * 4 3 2 7 7 C 1.39877 * 119.99916 * 185.27774 * 6 4 3 8 8 C 1.38905 * 120.06804 * 213.20823 * 7 6 4 9 9 C 1.38086 * 119.92404 * 180.02562 * 8 7 6 10 10 C 1.38308 * 120.07130 * 359.97438 * 9 8 7 11 11 C 1.38258 * 120.14456 * 0.02826 * 10 9 8 12 12 S 1.76201 * 119.96471 * 179.97438 * 11 10 9 13 13 C 1.81398 * 102.99936 * 90.00066 * 12 11 10 14 14 O 1.42105 * 102.99923 * 336.14770 * 12 11 10 15 15 C 1.38128 * 120.07297 * 0.23035 * 11 10 9 16 16 C 1.41306 * 107.16746 * 180.26409 * 3 2 1 17 17 N 1.30448 * 108.02198 * 359.61540 * 16 3 2 18 18 N 1.34270 * 126.28798 * 180.02562 * 2 1 3 19 19 C 1.46504 * 125.75420 * 359.94140 * 18 2 1 20 20 C 1.50707 * 109.46806 * 90.00010 * 19 18 2 21 21 H 1.07999 * 119.99953 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99562 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99931 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00042 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47234 * 89.99977 * 24 22 20 26 26 H 1.48504 * 109.47278 * 209.99886 * 24 22 20 27 27 H 1.48500 * 109.47387 * 329.99645 * 24 22 20 28 28 H 1.08998 * 109.47451 * 89.96939 * 1 2 3 29 29 H 1.08993 * 109.47480 * 209.97303 * 1 2 3 30 30 H 1.09001 * 109.46597 * 329.97382 * 1 2 3 31 31 H 0.97007 * 120.00361 * 5.27376 * 6 4 3 32 32 H 1.07999 * 120.03728 * 359.97438 * 8 7 6 33 33 H 1.08003 * 119.96295 * 179.97438 * 9 8 7 34 34 H 1.08004 * 119.92627 * 180.02562 * 10 9 8 35 35 H 1.09004 * 109.46955 * 299.99784 * 13 12 11 36 36 H 1.08991 * 109.47304 * 60.00302 * 13 12 11 37 37 H 1.08997 * 109.46978 * 180.02562 * 13 12 11 38 38 H 1.07998 * 120.03749 * 179.74094 * 15 11 10 39 39 H 1.07997 * 125.98671 * 179.77392 * 16 3 2 40 40 H 1.08999 * 109.47125 * 209.99975 * 19 18 2 41 41 H 1.08996 * 109.47056 * 330.00335 * 19 18 2 42 42 H 0.97001 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1126 0.0000 4 6 1.8862 2.5201 0.0005 5 8 0.6999 2.7878 0.0006 6 7 2.8004 3.5104 0.0010 7 6 2.3886 4.8424 0.1129 8 6 3.0980 5.8469 -0.5331 9 6 2.6891 7.1610 -0.4201 10 6 1.5742 7.4774 0.3348 11 6 0.8659 6.4799 0.9790 12 16 -0.5533 6.8885 1.9399 13 6 -1.9051 6.7874 0.7346 14 8 -0.3259 8.2485 2.2837 15 6 1.2728 5.1641 0.8744 16 6 3.6592 0.6496 -0.0062 17 7 3.6340 -0.6547 -0.0014 18 7 2.3016 -1.0823 -0.0005 19 6 1.8499 -2.4760 0.0001 20 6 1.6939 -2.9540 -1.4206 21 1 1.9100 -2.2866 -2.2417 22 6 1.2763 -4.2437 -1.6720 23 7 1.1396 -4.6608 -2.9117 24 14 0.9032 -5.3982 -0.2517 25 1 -0.5277 -5.2729 0.1254 26 1 1.1860 -6.7968 -0.6631 27 1 1.7546 -5.0429 0.9120 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3634 -0.8901 0.5134 30 1 -0.3632 0.8898 0.5143 31 1 3.7441 3.2994 -0.0763 32 1 3.9689 5.6004 -1.1223 33 1 3.2405 7.9425 -0.9217 34 1 1.2562 8.5059 0.4212 35 1 -1.7266 7.4984 -0.0721 36 1 -1.9526 5.7782 0.3256 37 1 -2.8485 7.0253 1.2259 38 1 0.7216 4.3859 1.3813 39 1 4.5451 1.2672 -0.0113 40 1 2.5850 -3.0959 0.5134 41 1 0.8917 -2.5471 0.5147 42 1 0.8454 -5.5680 -3.0885 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889040029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:04 Heat of formation + Delta-G solvation = 4.585353 kcal Electronic energy + Delta-G solvation = -26896.006907 eV Core-core repulsion = 22968.445644 eV Total energy + Delta-G solvation = -3927.561262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.40347 -41.13554 -39.21027 -36.86007 -35.88308 -35.62542 -33.95512 -32.86488 -32.09677 -30.98011 -29.63868 -29.39017 -28.12051 -25.18434 -24.35349 -23.95533 -22.88435 -21.18429 -20.60641 -19.40211 -19.26463 -18.46299 -17.93212 -17.21014 -16.88254 -16.52876 -16.36281 -16.17615 -15.80455 -15.78916 -15.51995 -15.24710 -14.92261 -14.52450 -14.47634 -14.38042 -14.11015 -13.86532 -13.72850 -13.65007 -13.57756 -13.11252 -13.07905 -12.98179 -12.73447 -12.63868 -12.53495 -12.13482 -11.83331 -11.70499 -11.54454 -11.26752 -10.89797 -10.80879 -10.25429 -10.15382 -9.57627 -9.34768 -9.07840 -8.41170 -6.53240 -0.10688 0.26412 0.71575 0.95981 1.32261 1.36624 1.37738 1.47590 1.62418 1.77543 2.19011 2.26799 2.41356 2.72313 2.91719 3.00117 3.69144 3.74412 3.92444 4.07735 4.12424 4.19244 4.21829 4.30752 4.41877 4.44803 4.51900 4.55242 4.59622 4.73446 4.77159 4.84015 5.13060 5.16073 5.16398 5.20075 5.20597 5.27662 5.37135 5.42616 5.63455 5.85130 5.99284 6.22164 6.48425 6.50160 6.80877 7.10914 7.22012 8.75202 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.019748 B = 0.002257 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.528388 B =12400.278068 C =13211.237256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.156 3.844 3 C -0.330 4.330 4 C 0.610 3.390 5 O -0.552 6.552 6 N -0.659 5.659 7 C 0.129 3.871 8 C -0.111 4.111 9 C -0.116 4.116 10 C -0.097 4.097 11 C -0.450 4.450 12 S 1.385 4.615 13 C -0.495 4.495 14 O -0.919 6.919 15 C -0.054 4.054 16 C 0.082 3.918 17 N -0.335 5.335 18 N -0.338 5.338 19 C 0.233 3.767 20 C -0.552 4.552 21 H 0.026 0.974 22 C 0.022 3.978 23 N -0.936 5.936 24 Si 0.948 3.052 25 H -0.251 1.251 26 H -0.281 1.281 27 H -0.241 1.241 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.425 0.575 32 H 0.156 0.844 33 H 0.149 0.851 34 H 0.114 0.886 35 H 0.066 0.934 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.155 0.845 39 H 0.228 0.772 40 H 0.056 0.944 41 H 0.074 0.926 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.549 19.176 11.462 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.020 3.980 3 C -0.345 4.345 4 C 0.401 3.599 5 O -0.430 6.430 6 N -0.305 5.305 7 C 0.034 3.966 8 C -0.131 4.131 9 C -0.136 4.136 10 C -0.117 4.117 11 C -0.546 4.546 12 S 1.584 4.416 13 C -0.652 4.652 14 O -0.915 6.915 15 C -0.076 4.076 16 C -0.106 4.106 17 N -0.154 5.154 18 N -0.115 5.115 19 C 0.113 3.887 20 C -0.590 4.590 21 H 0.044 0.956 22 C -0.178 4.178 23 N -0.574 5.574 24 Si 0.769 3.231 25 H -0.175 1.175 26 H -0.206 1.206 27 H -0.164 1.164 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.132 0.868 31 H 0.264 0.736 32 H 0.174 0.826 33 H 0.167 0.833 34 H 0.132 0.868 35 H 0.085 0.915 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.173 0.827 39 H 0.244 0.756 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.773 18.132 12.322 21.936 hybrid contribution 0.441 1.139 -2.325 2.627 sum -0.332 19.271 9.996 21.712 Atomic orbital electron populations 1.20671 0.85306 1.05117 1.03949 1.22034 0.96138 0.86470 0.93341 1.19756 0.93307 0.92531 1.28932 1.17124 0.85016 0.83598 0.74131 1.90686 1.17211 1.84180 1.50968 1.43107 1.11289 1.02978 1.73091 1.17982 0.97322 0.83801 0.97483 1.21377 1.01384 0.92070 0.98260 1.21289 0.96659 0.96716 0.98927 1.21164 0.95934 0.98633 0.95978 1.27652 1.16316 0.97833 1.12847 1.69001 0.82333 0.97980 0.92324 1.27720 1.15100 1.08781 1.13647 1.92954 1.83373 1.39191 1.76002 1.20981 0.96063 0.94898 0.95637 1.24565 0.97792 0.91638 0.96591 1.77124 0.98097 1.14544 1.25620 1.48783 1.03541 1.07390 1.51774 1.19901 0.96924 0.74558 0.97282 1.21191 1.48019 0.98781 0.91030 0.95567 1.25822 0.93688 0.99283 0.98979 1.70025 1.46685 1.19060 1.21664 0.85714 0.80560 0.77713 0.79096 1.17478 1.20609 1.16411 0.90507 0.90111 0.86788 0.73617 0.82639 0.83328 0.86806 0.91512 0.85334 0.85810 0.82725 0.75611 0.92620 0.90840 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.79 9.57 71.23 0.68 -2.11 16 2 C 0.16 5.48 7.01 42.14 0.30 5.78 16 3 C -0.33 -9.85 6.13 -20.15 -0.12 -9.98 16 4 C 0.61 15.69 7.55 86.66 0.65 16.35 16 5 O -0.55 -15.99 12.53 -4.05 -0.05 -16.04 16 6 N -0.66 -12.31 5.33 -306.46 -1.63 -13.94 16 7 C 0.13 2.52 6.28 38.17 0.24 2.76 16 8 C -0.11 -1.81 9.96 22.39 0.22 -1.58 16 9 C -0.12 -2.03 10.04 22.25 0.22 -1.80 16 10 C -0.10 -2.08 9.44 22.29 0.21 -1.87 16 11 C -0.45 -8.93 5.61 22.25 0.12 -8.80 16 12 S 1.39 21.70 14.19 -56.49 -0.80 20.90 16 13 C -0.49 -6.90 10.70 113.37 1.21 -5.68 16 14 O -0.92 -25.57 16.89 -148.98 -2.52 -28.09 16 15 C -0.05 -1.08 8.36 22.39 0.19 -0.90 16 16 C 0.08 2.30 11.51 85.65 0.99 3.29 16 17 N -0.33 -12.82 12.50 -56.27 -0.70 -13.52 16 18 N -0.34 -13.74 3.56 -336.67 -1.20 -14.94 16 19 C 0.23 10.14 5.04 85.63 0.43 10.57 16 20 C -0.55 -29.89 9.94 25.60 0.25 -29.63 16 21 H 0.03 1.65 8.06 -2.91 -0.02 1.63 16 22 C 0.02 1.20 5.47 84.66 0.46 1.67 16 23 N -0.94 -55.15 13.96 21.45 0.30 -54.85 16 24 Si 0.95 38.68 27.47 68.60 1.88 40.56 16 25 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 26 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.24 -8.90 6.54 99.48 0.65 -8.25 16 28 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.08 2.25 7.05 -2.39 -0.02 2.23 16 30 H 0.11 2.99 6.50 -2.39 -0.02 2.98 16 31 H 0.42 5.24 7.79 -92.70 -0.72 4.52 16 32 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 34 H 0.11 2.65 7.45 -2.91 -0.02 2.63 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.13 1.53 8.14 -2.40 -0.02 1.51 16 37 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.16 2.83 6.42 -2.91 -0.02 2.82 16 39 H 0.23 3.72 7.51 -2.91 -0.02 3.70 16 40 H 0.06 2.40 7.20 -2.39 -0.02 2.39 16 41 H 0.07 2.81 6.44 -2.39 -0.02 2.79 16 42 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -81.67 371.18 1.64 -80.03 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.30 Total: 21.83 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 6.06 Total: -21.94 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -3.24 Total: -97.26 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -2.57 Total: -44.12 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 1.88 Total: 40.56 kcal Atomic # 16 Polarization: 21.70 SS G_CDS: -0.80 Total: 20.90 kcal Total: -81.67 1.64 -80.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889040029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.619 kcal (2) G-P(sol) polarization free energy of solvation -81.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds