Wall clock time and date at job start Wed Apr 1 2020 05:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30177 * 126.79906 * 2 1 4 4 O 1.20925 * 111.60255 * 180.02562 * 3 2 1 5 5 C 1.34037 * 111.56828 * 359.76150 * 4 3 2 6 6 C 1.50701 * 126.78184 * 180.28637 * 5 4 3 7 7 C 1.35449 * 106.44549 * 0.37932 * 5 4 3 8 8 C 1.50699 * 128.00827 * 179.90959 * 7 5 4 9 9 S 1.81407 * 109.47295 * 269.68265 * 8 7 5 10 10 C 1.81394 * 103.00018 * 180.02562 * 9 8 7 11 11 C 1.50705 * 109.47084 * 180.02562 * 10 9 8 12 12 O 1.21267 * 119.99630 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00071 * 179.97438 * 11 10 9 14 14 C 1.37216 * 119.99727 * 355.11535 * 13 11 10 15 15 H 1.07997 * 119.99885 * 327.09227 * 14 13 11 16 16 C 1.38896 * 119.99573 * 147.09853 * 14 13 11 17 17 N 1.31413 * 119.99845 * 161.17220 * 16 14 13 18 18 Si 1.86805 * 120.00060 * 341.16463 * 16 14 13 19 19 H 1.48497 * 109.46971 * 92.17761 * 18 16 14 20 20 H 1.48499 * 109.46779 * 212.17753 * 18 16 14 21 21 H 1.48500 * 109.47226 * 332.17460 * 18 16 14 22 22 C 1.39424 * 119.99729 * 175.10859 * 13 11 10 23 23 C 1.39074 * 119.69264 * 135.24923 * 22 13 11 24 24 C 1.38375 * 119.09871 * 179.97438 * 23 22 13 25 25 C 1.38830 * 118.49261 * 0.02562 * 24 23 22 26 26 C 1.38152 * 119.30929 * 359.97438 * 25 24 23 27 27 N 1.31878 * 120.85310 * 359.74671 * 26 25 24 28 28 H 1.08997 * 109.46990 * 269.97345 * 1 2 3 29 29 H 1.08999 * 109.46848 * 29.97269 * 1 2 3 30 30 H 1.09000 * 109.46900 * 149.97656 * 1 2 3 31 31 H 1.08995 * 109.47223 * 270.11737 * 6 5 4 32 32 H 1.09004 * 109.46563 * 30.11173 * 6 5 4 33 33 H 1.09000 * 109.47341 * 150.11092 * 6 5 4 34 34 H 1.08998 * 109.47220 * 149.68344 * 8 7 5 35 35 H 1.08997 * 109.47053 * 29.67954 * 8 7 5 36 36 H 1.09001 * 109.46979 * 299.99428 * 10 9 8 37 37 H 1.08994 * 109.47514 * 60.00005 * 10 9 8 38 38 H 0.97001 * 120.00104 * 180.02562 * 17 16 14 39 39 H 1.07993 * 120.44904 * 359.95241 * 23 22 13 40 40 H 1.08000 * 120.75639 * 179.97438 * 24 23 22 41 41 H 1.08000 * 120.34698 * 180.02562 * 25 24 23 42 42 H 1.08001 * 119.56725 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7254 -0.0005 5 6 3.6025 -0.6067 0.0043 6 6 4.9022 -1.3695 0.0113 7 6 2.3541 -1.1320 -0.0005 8 6 1.9592 -2.5863 -0.0001 9 16 1.7993 -3.1701 -1.7102 10 6 1.3265 -4.9093 -1.5051 11 6 1.1531 -5.5458 -2.8601 12 8 1.3306 -4.8906 -3.8649 13 7 0.8009 -6.8433 -2.9550 14 6 0.6978 -7.6108 -1.8222 15 1 1.3495 -7.4233 -0.9818 16 6 -0.2447 -8.6290 -1.7567 17 7 -0.1166 -9.5866 -0.8659 18 14 -1.6945 -8.6370 -2.9347 19 1 -1.3493 -9.4344 -4.1389 20 1 -2.8743 -9.2393 -2.2635 21 1 -2.0123 -7.2436 -3.3381 22 6 0.5411 -7.4055 -4.2041 23 6 1.0652 -8.6543 -4.5200 24 6 0.7992 -9.2010 -5.7631 25 6 0.0155 -8.4767 -6.6511 26 6 -0.4723 -7.2415 -6.2704 27 7 -0.2067 -6.7481 -5.0766 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 5.2202 -1.5549 -1.0146 32 1 5.6637 -0.7850 0.5277 33 1 4.7628 -2.3202 0.5259 34 1 1.0055 -2.7037 0.5145 35 1 2.7233 -3.1701 0.5131 36 1 2.1062 -5.4352 -0.9541 37 1 0.3886 -4.9682 -0.9530 38 1 -0.7746 -10.2978 -0.8204 39 1 1.6719 -9.1900 -3.8050 40 1 1.1930 -10.1687 -6.0366 41 1 -0.2111 -8.8750 -7.6290 42 1 -1.0827 -6.6747 -6.9578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892466871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:15 Heat of formation + Delta-G solvation = 82.256364 kcal Electronic energy + Delta-G solvation = -27293.162344 eV Core-core repulsion = 23368.969150 eV Total energy + Delta-G solvation = -3924.193194 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.99160 -40.25362 -38.26008 -35.60423 -35.23193 -33.75622 -32.40374 -31.74524 -30.52824 -29.63181 -28.71122 -28.53518 -26.98492 -25.32030 -23.04186 -22.63561 -21.88351 -20.26744 -19.46757 -18.48263 -17.78383 -17.10136 -16.55720 -16.05153 -15.92659 -15.66636 -15.22987 -14.87396 -14.52412 -14.39520 -14.08201 -13.89080 -13.54608 -13.52996 -13.36998 -13.20565 -12.94591 -12.79050 -12.71089 -12.62133 -12.48713 -12.41169 -12.18956 -11.85889 -11.44060 -11.14853 -11.06055 -10.98339 -10.24884 -10.03471 -9.81191 -9.67893 -9.25706 -9.22428 -9.07057 -8.87255 -8.61074 -7.78528 -7.37389 -6.76058 -4.40501 1.14512 1.62776 1.70517 1.90369 2.39267 2.85459 2.98838 3.01276 3.14607 3.29445 3.42915 3.90559 4.01006 4.07849 4.34731 4.38297 4.59072 4.80215 4.81939 5.05929 5.15899 5.21434 5.27008 5.31698 5.39839 5.43529 5.48053 5.54762 5.60020 5.61526 5.62451 5.67058 5.79278 5.85769 5.87454 5.98152 6.07997 6.34126 6.55188 6.72397 6.93119 7.34285 7.67669 7.94498 8.20323 8.45207 8.68867 8.96743 9.32249 10.31141 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016828 B = 0.002774 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.529985 B =10092.126787 C =10499.297179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.037 3.963 3 N -0.370 5.370 4 O 0.094 5.906 5 C -0.012 4.012 6 C -0.075 4.075 7 C -0.183 4.183 8 C -0.030 4.030 9 S -0.185 6.185 10 C -0.098 4.098 11 C 0.511 3.489 12 O -0.531 6.531 13 N -0.406 5.406 14 C -0.360 4.360 15 H 0.118 0.882 16 C 0.084 3.916 17 N -0.846 5.846 18 Si 0.844 3.156 19 H -0.259 1.259 20 H -0.284 1.284 21 H -0.244 1.244 22 C 0.360 3.640 23 C -0.170 4.170 24 C -0.068 4.068 25 C -0.214 4.214 26 C 0.113 3.887 27 N -0.489 5.489 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.280 0.720 39 H 0.143 0.857 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.468 7.614 1.726 8.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 N -0.077 5.077 4 O 0.031 5.969 5 C -0.079 4.079 6 C -0.132 4.132 7 C -0.188 4.188 8 C -0.178 4.178 9 S 0.043 5.957 10 C -0.249 4.249 11 C 0.299 3.701 12 O -0.409 6.409 13 N -0.123 5.123 14 C -0.485 4.485 15 H 0.136 0.864 16 C -0.127 4.127 17 N -0.479 5.479 18 Si 0.668 3.332 19 H -0.184 1.184 20 H -0.211 1.211 21 H -0.168 1.168 22 C 0.132 3.868 23 C -0.193 4.193 24 C -0.094 4.094 25 C -0.236 4.236 26 C -0.046 4.046 27 N -0.203 5.203 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.091 0.909 39 H 0.160 0.840 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.120 10.475 0.694 11.277 hybrid contribution -0.918 -2.780 0.591 2.987 sum 3.201 7.694 1.285 8.432 Atomic orbital electron populations 1.20227 0.85802 1.04432 1.03251 1.23424 0.99032 0.88149 1.01690 1.73829 0.89228 1.23816 1.20836 1.84791 1.21699 1.22329 1.68053 1.24255 0.98195 0.83777 1.01651 1.20386 0.89708 0.98434 1.04687 1.20144 0.91971 0.95551 1.11114 1.21562 1.05058 0.91946 0.99197 1.87574 1.91472 1.10075 1.06616 1.23364 1.06574 0.94387 1.00582 1.19682 0.79955 0.81107 0.89328 1.90659 1.51455 1.61310 1.37482 1.41403 1.59551 1.08034 1.03277 1.19152 1.20806 1.15211 0.93348 0.86425 1.25219 0.96985 0.94385 0.96087 1.69703 1.34729 1.09292 1.34144 0.87271 0.82831 0.81452 0.81638 1.18417 1.21072 1.16755 1.18447 0.91778 0.90145 0.86421 1.21801 1.02273 0.97535 0.97677 1.21309 0.96096 0.99033 0.92947 1.21863 1.03367 0.97296 1.01050 1.22399 0.96954 0.93071 0.92191 1.67361 1.13284 1.36311 1.03363 0.90230 0.90465 0.89279 0.88755 0.89903 0.88944 0.88785 0.88886 0.87494 0.86990 0.90927 0.83958 0.85346 0.85617 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.39 36.01 0.37 -0.48 16 2 C 0.04 0.49 7.33 -82.10 -0.60 -0.11 16 3 N -0.37 -5.29 12.07 33.42 0.40 -4.88 16 4 O 0.09 1.24 11.20 17.18 0.19 1.43 16 5 C -0.01 -0.14 7.49 -35.30 -0.26 -0.41 16 6 C -0.07 -0.58 10.30 36.01 0.37 -0.21 16 7 C -0.18 -2.30 5.58 -104.42 -0.58 -2.89 16 8 C -0.03 -0.36 6.27 36.01 0.23 -0.13 16 9 S -0.19 -3.06 20.86 -107.50 -2.24 -5.30 16 10 C -0.10 -1.77 5.15 36.01 0.19 -1.58 16 11 C 0.51 11.65 7.52 -10.98 -0.08 11.57 16 12 O -0.53 -13.44 15.15 5.57 0.08 -13.35 16 13 N -0.41 -9.64 2.52 -60.71 -0.15 -9.80 16 14 C -0.36 -8.66 8.63 -14.90 -0.13 -8.78 16 15 H 0.12 2.81 7.08 -52.49 -0.37 2.44 16 16 C 0.08 2.09 4.94 -17.49 -0.09 2.00 16 17 N -0.85 -21.63 13.96 55.49 0.77 -20.86 16 18 Si 0.84 19.98 24.24 -169.99 -4.12 15.86 16 19 H -0.26 -6.01 6.00 56.52 0.34 -5.67 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.24 -6.17 6.69 56.52 0.38 -5.79 16 22 C 0.36 8.42 3.26 -154.64 -0.50 7.92 16 23 C -0.17 -3.57 7.18 -39.22 -0.28 -3.85 16 24 C -0.07 -1.19 9.63 -39.31 -0.38 -1.57 16 25 C -0.21 -3.57 10.11 -39.39 -0.40 -3.96 16 26 C 0.11 2.13 11.18 -17.56 -0.20 1.94 16 27 N -0.49 -11.35 8.20 -12.34 -0.10 -11.46 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.63 7.43 -51.93 -0.39 0.24 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.09 0.96 7.44 -51.93 -0.39 0.57 16 36 H 0.11 1.74 7.51 -51.92 -0.39 1.35 16 37 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 38 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 39 H 0.14 2.98 7.76 -52.49 -0.41 2.58 16 40 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 41 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 42 H 0.15 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 369.67 15.07 5.57 5.57 Total: -1.00 -32.09 369.67 -7.33 -39.43 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -5.39 Total: 3.92 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -2.35 Total: -0.56 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.92 Total: -46.99 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.28 Total: -11.92 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.12 Total: 15.86 kcal Atomic # 16 Polarization: -3.06 SS G_CDS: -2.24 Total: -5.30 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.09 -7.33 -39.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892466871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.682 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds