Wall clock time and date at job start Wed Apr 1 2020 05:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30177 * 126.79906 * 2 1 4 4 O 1.20925 * 111.60255 * 180.02562 * 3 2 1 5 5 C 1.34037 * 111.56828 * 359.76150 * 4 3 2 6 6 C 1.50701 * 126.78184 * 180.28637 * 5 4 3 7 7 C 1.35449 * 106.44549 * 0.37932 * 5 4 3 8 8 C 1.50699 * 128.00827 * 179.90959 * 7 5 4 9 9 S 1.81407 * 109.47295 * 269.68265 * 8 7 5 10 10 C 1.81394 * 103.00018 * 180.02562 * 9 8 7 11 11 C 1.50705 * 109.47084 * 180.02562 * 10 9 8 12 12 O 1.21267 * 119.99630 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00071 * 179.97438 * 11 10 9 14 14 C 1.37216 * 119.99727 * 355.11535 * 13 11 10 15 15 H 1.07997 * 119.99885 * 327.09227 * 14 13 11 16 16 C 1.38896 * 119.99573 * 147.09853 * 14 13 11 17 17 N 1.31413 * 119.99845 * 161.17220 * 16 14 13 18 18 Si 1.86805 * 120.00060 * 341.16463 * 16 14 13 19 19 H 1.48497 * 109.46971 * 92.17761 * 18 16 14 20 20 H 1.48499 * 109.46779 * 212.17753 * 18 16 14 21 21 H 1.48500 * 109.47226 * 332.17460 * 18 16 14 22 22 C 1.39424 * 119.99729 * 175.10859 * 13 11 10 23 23 C 1.39074 * 119.69264 * 135.24923 * 22 13 11 24 24 C 1.38375 * 119.09871 * 179.97438 * 23 22 13 25 25 C 1.38830 * 118.49261 * 0.02562 * 24 23 22 26 26 C 1.38152 * 119.30929 * 359.97438 * 25 24 23 27 27 N 1.31878 * 120.85310 * 359.74671 * 26 25 24 28 28 H 1.08997 * 109.46990 * 269.97345 * 1 2 3 29 29 H 1.08999 * 109.46848 * 29.97269 * 1 2 3 30 30 H 1.09000 * 109.46900 * 149.97656 * 1 2 3 31 31 H 1.08995 * 109.47223 * 270.11737 * 6 5 4 32 32 H 1.09004 * 109.46563 * 30.11173 * 6 5 4 33 33 H 1.09000 * 109.47341 * 150.11092 * 6 5 4 34 34 H 1.08998 * 109.47220 * 149.68344 * 8 7 5 35 35 H 1.08997 * 109.47053 * 29.67954 * 8 7 5 36 36 H 1.09001 * 109.46979 * 299.99428 * 10 9 8 37 37 H 1.08994 * 109.47514 * 60.00005 * 10 9 8 38 38 H 0.97001 * 120.00104 * 180.02562 * 17 16 14 39 39 H 1.07993 * 120.44904 * 359.95241 * 23 22 13 40 40 H 1.08000 * 120.75639 * 179.97438 * 24 23 22 41 41 H 1.08000 * 120.34698 * 180.02562 * 25 24 23 42 42 H 1.08001 * 119.56725 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7254 -0.0005 5 6 3.6025 -0.6067 0.0043 6 6 4.9022 -1.3695 0.0113 7 6 2.3541 -1.1320 -0.0005 8 6 1.9592 -2.5863 -0.0001 9 16 1.7993 -3.1701 -1.7102 10 6 1.3265 -4.9093 -1.5051 11 6 1.1531 -5.5458 -2.8601 12 8 1.3306 -4.8906 -3.8649 13 7 0.8009 -6.8433 -2.9550 14 6 0.6978 -7.6108 -1.8222 15 1 1.3495 -7.4233 -0.9818 16 6 -0.2447 -8.6290 -1.7567 17 7 -0.1166 -9.5866 -0.8659 18 14 -1.6945 -8.6370 -2.9347 19 1 -1.3493 -9.4344 -4.1389 20 1 -2.8743 -9.2393 -2.2635 21 1 -2.0123 -7.2436 -3.3381 22 6 0.5411 -7.4055 -4.2041 23 6 1.0652 -8.6543 -4.5200 24 6 0.7992 -9.2010 -5.7631 25 6 0.0155 -8.4767 -6.6511 26 6 -0.4723 -7.2415 -6.2704 27 7 -0.2067 -6.7481 -5.0766 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 5.2202 -1.5549 -1.0146 32 1 5.6637 -0.7850 0.5277 33 1 4.7628 -2.3202 0.5259 34 1 1.0055 -2.7037 0.5145 35 1 2.7233 -3.1701 0.5131 36 1 2.1062 -5.4352 -0.9541 37 1 0.3886 -4.9682 -0.9530 38 1 -0.7746 -10.2978 -0.8204 39 1 1.6719 -9.1900 -3.8050 40 1 1.1930 -10.1687 -6.0366 41 1 -0.2111 -8.8750 -7.6290 42 1 -1.0827 -6.6747 -6.9578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892466871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:14 Heat of formation + Delta-G solvation = 63.445465 kcal Electronic energy + Delta-G solvation = -27293.978046 eV Core-core repulsion = 23368.969150 eV Total energy + Delta-G solvation = -3925.008896 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.97124 -41.87276 -39.89326 -37.01274 -36.53090 -34.64308 -34.21493 -33.30088 -32.04685 -30.57040 -30.00175 -29.58573 -27.84761 -27.13773 -24.56022 -24.15526 -22.90392 -21.27718 -21.06080 -20.16611 -18.78044 -18.36496 -17.94771 -17.77129 -17.43420 -17.01833 -16.70651 -16.23991 -15.82467 -15.57082 -15.53140 -15.22935 -15.08931 -14.73924 -14.46929 -14.31302 -14.19969 -14.01912 -13.93733 -13.75311 -13.61157 -13.43855 -13.24636 -13.12269 -13.09748 -12.83129 -12.74277 -12.09478 -11.98450 -11.60226 -11.19097 -10.95191 -10.85349 -10.73836 -10.55653 -10.22177 -10.04365 -9.43820 -8.67010 -8.65319 -6.28591 0.06258 0.14665 0.42689 0.63808 1.11372 1.23576 1.26460 1.40597 1.70807 1.74990 2.11053 2.13883 2.32981 2.72503 3.07305 3.15089 3.47733 3.56197 3.69307 3.91486 3.98616 4.03217 4.19739 4.23767 4.31809 4.35368 4.40676 4.43498 4.50396 4.50900 4.62666 4.68968 4.74562 4.76493 4.87085 4.91307 5.08395 5.15370 5.24308 5.26848 5.34099 5.77618 5.84566 6.17689 6.69486 7.01936 7.20520 7.24751 7.60049 8.44538 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016828 B = 0.002774 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.529985 B =10092.126787 C =10499.297179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.028 3.972 3 N -0.397 5.397 4 O 0.084 5.916 5 C -0.001 4.001 6 C -0.077 4.077 7 C -0.204 4.204 8 C -0.009 4.009 9 S -0.227 6.227 10 C -0.086 4.086 11 C 0.500 3.500 12 O -0.565 6.565 13 N -0.419 5.419 14 C -0.350 4.350 15 H 0.115 0.885 16 C 0.063 3.937 17 N -0.873 5.873 18 Si 0.886 3.114 19 H -0.251 1.251 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.325 3.675 23 C -0.188 4.188 24 C -0.065 4.065 25 C -0.192 4.192 26 C 0.094 3.906 27 N -0.527 5.527 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.283 0.717 39 H 0.133 0.867 40 H 0.170 0.830 41 H 0.177 0.823 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.808 6.698 0.941 8.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.132 4.132 3 N -0.106 5.106 4 O 0.024 5.976 5 C -0.067 4.067 6 C -0.134 4.134 7 C -0.210 4.210 8 C -0.157 4.157 9 S 0.001 5.999 10 C -0.237 4.237 11 C 0.290 3.710 12 O -0.445 6.445 13 N -0.137 5.137 14 C -0.476 4.476 15 H 0.132 0.868 16 C -0.145 4.145 17 N -0.508 5.508 18 Si 0.711 3.289 19 H -0.176 1.176 20 H -0.214 1.214 21 H -0.198 1.198 22 C 0.099 3.901 23 C -0.211 4.211 24 C -0.091 4.091 25 C -0.212 4.212 26 C -0.064 4.064 27 N -0.242 5.242 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.134 0.866 38 H 0.094 0.906 39 H 0.151 0.849 40 H 0.188 0.812 41 H 0.195 0.805 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.467 9.529 -0.105 10.524 hybrid contribution -0.974 -2.428 0.679 2.703 sum 3.493 7.101 0.574 7.934 Atomic orbital electron populations 1.20309 0.84511 1.04379 1.04493 1.23884 1.00138 0.88272 1.00880 1.73821 0.89745 1.24641 1.22414 1.84762 1.21401 1.23216 1.68223 1.24933 0.99372 0.83251 0.99191 1.20618 0.88485 0.98918 1.05351 1.20263 0.92431 0.95562 1.12712 1.21557 1.06623 0.91699 0.95800 1.87695 1.91517 1.09218 1.11456 1.23209 1.07300 0.95227 0.97935 1.20377 0.79046 0.80871 0.90741 1.90615 1.52968 1.61920 1.39026 1.41552 1.60027 1.08469 1.03621 1.19135 1.20200 1.14608 0.93688 0.86763 1.25446 0.97854 0.94528 0.96677 1.69725 1.35580 1.10090 1.35440 0.86646 0.81538 0.79554 0.81117 1.17575 1.21353 1.19771 1.18715 0.93278 0.91293 0.86790 1.21918 1.02843 0.97027 0.99276 1.21870 0.95240 1.00525 0.91436 1.22422 1.00507 0.95695 1.02586 1.23114 0.97311 0.94577 0.91436 1.67304 1.14240 1.37670 1.05020 0.88297 0.90249 0.89536 0.88485 0.87605 0.87474 0.87572 0.86518 0.85944 0.86585 0.90638 0.84864 0.81211 0.80546 0.80446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.65 10.39 71.24 0.74 -0.91 16 2 C 0.03 0.74 7.33 43.58 0.32 1.05 16 3 N -0.40 -11.26 12.07 -49.55 -0.60 -11.86 16 4 O 0.08 2.17 11.20 71.66 0.80 2.98 16 5 C 0.00 -0.02 7.49 25.04 0.19 0.17 16 6 C -0.08 -1.03 10.30 71.24 0.73 -0.30 16 7 C -0.20 -4.93 5.58 -19.74 -0.11 -5.04 16 8 C -0.01 -0.21 6.27 71.24 0.45 0.24 16 9 S -0.23 -7.47 20.86 -56.49 -1.18 -8.64 16 10 C -0.09 -3.12 5.15 71.24 0.37 -2.76 16 11 C 0.50 23.29 7.52 87.66 0.66 23.95 16 12 O -0.57 -29.38 15.15 -2.99 -0.05 -29.42 16 13 N -0.42 -20.24 2.52 -464.37 -1.17 -21.41 16 14 C -0.35 -17.07 8.63 84.01 0.73 -16.34 16 15 H 0.11 5.52 7.08 -2.91 -0.02 5.50 16 16 C 0.06 3.14 4.94 84.91 0.42 3.56 16 17 N -0.87 -44.73 13.96 21.65 0.30 -44.43 16 18 Si 0.89 41.57 24.24 68.60 1.66 43.23 16 19 H -0.25 -11.22 6.00 99.48 0.60 -10.62 16 20 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.27 -13.99 6.69 99.48 0.67 -13.32 16 22 C 0.33 15.26 3.26 132.91 0.43 15.69 16 23 C -0.19 -7.72 7.18 22.50 0.16 -7.56 16 24 C -0.06 -2.07 9.63 22.44 0.22 -1.85 16 25 C -0.19 -5.59 10.11 22.39 0.23 -5.36 16 26 C 0.09 3.34 11.18 84.67 0.95 4.29 16 27 N -0.53 -24.38 8.20 -192.95 -1.58 -25.96 16 28 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.11 1.16 7.43 -2.39 -0.02 1.14 16 34 H 0.11 2.17 8.14 -2.39 -0.02 2.16 16 35 H 0.12 2.11 7.44 -2.39 -0.02 2.09 16 36 H 0.12 3.95 7.51 -2.39 -0.02 3.94 16 37 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 38 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 39 H 0.13 5.59 7.76 -2.91 -0.02 5.57 16 40 H 0.17 3.92 8.06 -2.91 -0.02 3.90 16 41 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 42 H 0.18 4.98 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -72.01 369.67 5.56 -66.45 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.90 Total: 20.24 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 6.47 Total: 8.83 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -3.05 Total: -103.66 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: 0.76 Total: -26.45 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 1.66 Total: 43.23 kcal Atomic # 16 Polarization: -7.47 SS G_CDS: -1.18 Total: -8.64 kcal Total: -72.01 5.56 -66.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892466871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.897 kcal (2) G-P(sol) polarization free energy of solvation -72.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds