Wall clock time and date at job start Wed Apr 1 2020 04:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48505 * 109.47087 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47042 * 120.00217 * 3 2 1 6 6 H 1.48503 * 109.47023 * 240.00446 * 3 2 1 7 7 C 1.40044 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00321 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99681 * 354.99925 * 9 7 2 11 11 N 1.34777 * 120.00313 * 175.00114 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94953 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.46897 * 111.00153 * 172.60616 * 14 13 12 16 16 C 1.50703 * 109.47306 * 314.30128 * 15 14 13 17 17 C 1.33692 * 125.86488 * 89.99842 * 16 15 14 18 18 N 1.31324 * 115.87177 * 180.02562 * 17 16 15 19 19 C 1.30479 * 116.97284 * 359.97438 * 18 17 16 20 20 C 1.47114 * 125.48606 * 179.97438 * 19 18 17 21 21 C 1.36260 * 125.95922 * 0.02891 * 20 19 18 22 22 C 1.40778 * 106.72571 * 179.97438 * 21 20 19 23 23 C 1.34831 * 107.07088 * 0.02562 * 22 21 20 24 24 O 1.34270 * 108.72132 * 359.75393 * 23 22 21 25 25 S 1.76174 * 109.03292 * 359.73975 * 19 18 17 26 26 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 27 27 C 1.47076 * 120.88062 * 185.22734 * 11 9 7 28 28 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 30 30 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 31 31 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 32 32 H 1.08999 * 109.44526 * 173.95833 * 13 12 11 33 33 H 1.09008 * 109.47010 * 74.30063 * 15 14 13 34 34 H 1.09000 * 109.47622 * 194.30162 * 15 14 13 35 35 H 1.07999 * 122.06086 * 0.02562 * 17 16 15 36 36 H 1.08000 * 126.63746 * 359.94010 * 21 20 19 37 37 H 1.07999 * 126.46671 * 179.97438 * 22 21 20 38 38 H 1.07996 * 125.63535 * 180.02562 * 23 22 21 39 39 H 1.08994 * 109.49159 * 303.15220 * 26 14 13 40 40 H 1.08996 * 109.49043 * 183.06336 * 26 14 13 41 41 H 1.08999 * 109.63197 * 350.89564 * 27 11 9 42 42 H 1.09008 * 109.62635 * 111.48013 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2757 2.7464 -0.0006 5 1 3.0945 1.6963 1.2125 6 1 3.0944 1.6963 -1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0617 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7848 -7.0303 1.5623 16 6 5.2888 -6.9357 1.5755 17 6 6.0204 -6.2081 2.4256 18 7 7.3217 -6.2692 2.2592 19 6 7.7596 -7.0268 1.2914 20 6 9.1734 -7.2309 0.9395 21 6 10.2434 -6.6649 1.5652 22 6 11.3942 -7.1344 0.9041 23 6 10.9775 -7.9541 -0.0820 24 8 9.6365 -8.0142 -0.0546 25 16 6.3856 -7.7714 0.4780 26 6 1.7771 -5.8907 0.8322 27 6 1.2249 -4.9226 -0.2195 28 1 -0.4850 0.8400 0.0004 29 1 3.7736 -3.9711 -1.0920 30 1 3.8007 -2.6840 0.1423 31 1 3.6077 -4.3397 1.9417 32 1 4.9637 -4.8055 0.8864 33 1 3.4033 -6.8950 2.5745 34 1 3.4857 -8.0097 1.1892 35 1 5.5692 -5.6071 3.2012 36 1 10.2142 -5.9868 2.4052 37 1 12.4177 -6.8844 1.1414 38 1 11.6170 -8.4793 -0.7759 39 1 1.5327 -5.5231 1.8288 40 1 1.3333 -6.8758 0.6885 41 1 0.1612 -4.7606 -0.0453 42 1 1.3766 -5.3387 -1.2156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895066703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:31 Heat of formation + Delta-G solvation = 52.074697 kcal Electronic energy + Delta-G solvation = -27075.160870 eV Core-core repulsion = 23149.658900 eV Total energy + Delta-G solvation = -3925.501970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.89868 -39.97715 -38.72212 -36.67188 -33.94883 -33.41367 -32.51615 -31.92503 -30.67208 -29.69960 -27.48766 -26.25271 -25.23804 -23.59703 -22.95834 -22.15062 -21.82731 -20.74600 -19.71830 -18.84654 -18.20630 -17.43309 -16.72315 -16.52214 -15.91723 -15.78756 -15.25422 -14.95874 -14.57272 -14.39951 -14.30680 -14.12321 -13.93641 -13.75421 -13.38914 -13.26891 -13.02926 -12.70511 -12.43657 -12.42761 -11.77919 -11.53495 -11.28447 -11.21202 -11.02291 -10.89747 -10.79654 -10.51633 -10.41399 -10.25516 -10.05739 -9.95133 -9.83991 -9.44988 -8.86684 -8.41316 -8.15305 -7.60889 -7.21629 -6.21374 -4.66482 -0.01515 0.96936 1.44824 1.47362 2.19420 2.23943 2.79049 3.14719 3.19783 3.21366 3.97464 4.02433 4.10286 4.52132 4.53439 4.58239 4.61434 4.64886 4.73094 4.92564 5.23389 5.35917 5.39899 5.46950 5.49237 5.52561 5.62067 5.66197 5.71830 5.81627 5.82936 5.87823 6.05334 6.06642 6.20686 6.43436 6.50572 6.60599 6.67919 7.06233 7.16910 7.40069 7.43656 7.58681 8.11311 8.34286 9.00426 9.41806 10.55579 10.74116 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.002517 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.128909 B =11122.561981 C =12560.934354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.560 3.440 10 O -0.579 6.579 11 N -0.645 5.645 12 C 0.130 3.870 13 C 0.037 3.963 14 N -0.531 5.531 15 C 0.127 3.873 16 C -0.195 4.195 17 C 0.042 3.958 18 N -0.446 5.446 19 C 0.121 3.879 20 C 0.039 3.961 21 C -0.138 4.138 22 C -0.216 4.216 23 C -0.017 4.017 24 O -0.169 6.169 25 S 0.143 5.857 26 C 0.046 3.954 27 C 0.126 3.874 28 H 0.269 0.731 29 H 0.049 0.951 30 H 0.095 0.905 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.178 0.822 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.211 0.789 39 H 0.038 0.962 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.775 -17.473 2.428 26.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.090 0.910 9 C 0.366 3.634 10 O -0.462 6.462 11 N -0.383 5.383 12 C 0.005 3.995 13 C -0.092 4.092 14 N -0.257 5.257 15 C -0.002 4.002 16 C -0.317 4.317 17 C -0.111 4.111 18 N -0.161 5.161 19 C -0.152 4.152 20 C -0.014 4.014 21 C -0.163 4.163 22 C -0.235 4.235 23 C -0.087 4.087 24 O -0.064 6.064 25 S 0.400 5.600 26 C -0.083 4.083 27 C 0.001 3.999 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.195 0.805 36 H 0.177 0.823 37 H 0.174 0.826 38 H 0.227 0.773 39 H 0.056 0.944 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 18.971 -18.083 1.259 26.239 hybrid contribution 0.258 1.552 1.542 2.203 sum 19.228 -16.531 2.800 25.512 Atomic orbital electron populations 1.70002 1.07066 1.27430 1.35170 1.25722 0.94616 1.00290 0.92559 0.86457 0.79874 0.81087 0.79520 1.20531 1.19231 1.19202 1.20932 0.93523 0.89277 1.54377 0.91040 1.18239 0.86884 0.82178 0.76087 1.90586 1.14380 1.86084 1.55116 1.48254 1.04710 1.05831 1.79538 1.21557 0.82653 0.98576 0.96692 1.22790 0.98599 0.88934 0.98876 1.62178 1.05215 1.05999 1.52277 1.20530 0.85471 0.97351 0.96862 1.25919 1.01140 1.04203 1.00461 1.21569 0.86694 1.01233 1.01600 1.66483 1.14871 1.17729 1.17040 1.23836 0.93356 1.00790 0.97206 1.18609 0.90024 0.99524 0.93247 1.21933 0.90175 1.02160 1.01988 1.21867 1.00346 1.02474 0.98824 1.24279 0.80023 1.02547 1.01853 1.84060 1.22684 1.54623 1.45056 1.85109 0.97439 1.44335 1.33074 1.22555 0.86337 1.00004 0.99379 1.21199 0.97953 0.84372 0.96361 0.92020 0.93256 0.88744 0.94388 0.90708 0.92395 0.89379 0.80464 0.82274 0.82617 0.77256 0.94382 0.90626 0.89383 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.97 11.84 55.55 0.66 -22.31 16 2 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 3 Si 0.91 20.08 29.56 -169.99 -5.02 15.06 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.54 -15.24 8.86 -35.63 -0.32 -15.56 16 8 H 0.07 1.83 5.74 -52.49 -0.30 1.52 16 9 C 0.56 15.94 7.63 -12.99 -0.10 15.84 16 10 O -0.58 -18.69 14.49 5.20 0.08 -18.61 16 11 N -0.64 -14.75 3.00 -173.84 -0.52 -15.27 16 12 C 0.13 2.49 6.50 -3.36 -0.02 2.47 16 13 C 0.04 0.58 4.96 -3.46 -0.02 0.56 16 14 N -0.53 -7.65 4.77 -235.46 -1.12 -8.78 16 15 C 0.13 1.45 5.80 -4.98 -0.03 1.42 16 16 C -0.20 -2.26 4.76 -35.90 -0.17 -2.43 16 17 C 0.04 0.50 9.44 -19.36 -0.18 0.32 16 18 N -0.45 -5.75 10.52 -11.54 -0.12 -5.87 16 19 C 0.12 1.48 7.46 -14.53 -0.11 1.37 16 20 C 0.04 0.44 7.22 -36.69 -0.26 0.17 16 21 C -0.14 -1.35 10.80 -39.33 -0.42 -1.78 16 22 C -0.22 -1.58 10.88 -39.83 -0.43 -2.01 16 23 C -0.02 -0.12 12.08 29.52 0.36 0.24 16 24 O -0.17 -1.69 10.67 4.50 0.05 -1.64 16 25 S 0.14 1.60 23.42 -107.50 -2.52 -0.91 16 26 C 0.05 0.70 5.58 -3.70 -0.02 0.68 16 27 C 0.13 2.45 6.61 -3.60 -0.02 2.43 16 28 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 29 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 30 H 0.09 1.88 5.46 -51.93 -0.28 1.60 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.10 5.56 -51.93 -0.29 0.81 16 33 H 0.06 0.62 8.08 -51.92 -0.42 0.20 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.18 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.21 0.52 8.06 -52.49 -0.42 0.09 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 41 H 0.09 1.89 7.04 -51.93 -0.37 1.53 16 42 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 LS Contribution 364.88 15.07 5.50 5.50 Total: -1.00 -35.33 364.88 -9.90 -45.23 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.02 Total: 1.53 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -1.85 Total: 6.09 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: -1.11 Total: -52.23 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: 0.12 Total: -20.26 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.52 Total: -0.91 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.33 -9.90 -45.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895066703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.302 kcal (2) G-P(sol) polarization free energy of solvation -35.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds