Wall clock time and date at job start Wed Apr 1 2020 04:25:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30673 * 1
3 3 Si 1.86795 * 120.00118 * 2 1
4 4 H 1.48505 * 109.47087 * 359.97438 * 3 2 1
5 5 H 1.48501 * 109.47042 * 120.00217 * 3 2 1
6 6 H 1.48503 * 109.47023 * 240.00446 * 3 2 1
7 7 C 1.40044 * 119.99689 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00127 * 179.97438 * 7 2 1
9 9 C 1.46376 * 120.00321 * 359.97438 * 7 2 1
10 10 O 1.21687 * 119.99681 * 354.99925 * 9 7 2
11 11 N 1.34777 * 120.00313 * 175.00114 * 9 7 2
12 12 C 1.47077 * 120.87886 * 4.94953 * 11 9 7
13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9
14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11
15 15 C 1.46897 * 111.00153 * 172.60616 * 14 13 12
16 16 C 1.50703 * 109.47306 * 314.30128 * 15 14 13
17 17 C 1.33692 * 125.86488 * 89.99842 * 16 15 14
18 18 N 1.31324 * 115.87177 * 180.02562 * 17 16 15
19 19 C 1.30479 * 116.97284 * 359.97438 * 18 17 16
20 20 C 1.47114 * 125.48606 * 179.97438 * 19 18 17
21 21 C 1.36260 * 125.95922 * 0.02891 * 20 19 18
22 22 C 1.40778 * 106.72571 * 179.97438 * 21 20 19
23 23 C 1.34831 * 107.07088 * 0.02562 * 22 21 20
24 24 O 1.34270 * 108.72132 * 359.75393 * 23 22 21
25 25 S 1.76174 * 109.03292 * 359.73975 * 19 18 17
26 26 C 1.46905 * 111.27013 * 296.75466 * 14 13 12
27 27 C 1.47076 * 120.88062 * 185.22734 * 11 9 7
28 28 H 0.97000 * 120.00181 * 359.97438 * 1 2 3
29 29 H 1.09007 * 109.62715 * 248.52147 * 12 11 9
30 30 H 1.09000 * 109.63081 * 9.10385 * 12 11 9
31 31 H 1.09001 * 109.64838 * 294.07883 * 13 12 11
32 32 H 1.08999 * 109.44526 * 173.95833 * 13 12 11
33 33 H 1.09008 * 109.47010 * 74.30063 * 15 14 13
34 34 H 1.09000 * 109.47622 * 194.30162 * 15 14 13
35 35 H 1.07999 * 122.06086 * 0.02562 * 17 16 15
36 36 H 1.08000 * 126.63746 * 359.94010 * 21 20 19
37 37 H 1.07999 * 126.46671 * 179.97438 * 22 21 20
38 38 H 1.07996 * 125.63535 * 180.02562 * 23 22 21
39 39 H 1.08994 * 109.49159 * 303.15220 * 26 14 13
40 40 H 1.08996 * 109.49043 * 183.06336 * 26 14 13
41 41 H 1.08999 * 109.63197 * 350.89564 * 27 11 9
42 42 H 1.09008 * 109.62635 * 111.48013 * 27 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3067 0.0000 0.0000
3 14 2.2407 1.6177 0.0000
4 1 1.2757 2.7464 -0.0006
5 1 3.0945 1.6963 1.2125
6 1 3.0944 1.6963 -1.2126
7 6 2.0069 -1.2129 -0.0005
8 1 3.0869 -1.2129 -0.0010
9 6 1.2750 -2.4805 -0.0005
10 8 0.0617 -2.4825 0.0918
11 7 1.9449 -3.6455 -0.1028
12 6 3.4155 -3.6728 -0.1066
13 6 3.8814 -4.6906 0.9466
14 7 3.2360 -5.9847 0.6885
15 6 3.7848 -7.0303 1.5623
16 6 5.2888 -6.9357 1.5755
17 6 6.0204 -6.2081 2.4256
18 7 7.3217 -6.2692 2.2592
19 6 7.7596 -7.0268 1.2914
20 6 9.1734 -7.2309 0.9395
21 6 10.2434 -6.6649 1.5652
22 6 11.3942 -7.1344 0.9041
23 6 10.9775 -7.9541 -0.0820
24 8 9.6365 -8.0142 -0.0546
25 16 6.3856 -7.7714 0.4780
26 6 1.7771 -5.8907 0.8322
27 6 1.2249 -4.9226 -0.2195
28 1 -0.4850 0.8400 0.0004
29 1 3.7736 -3.9711 -1.0920
30 1 3.8007 -2.6840 0.1423
31 1 3.6077 -4.3397 1.9417
32 1 4.9637 -4.8055 0.8864
33 1 3.4033 -6.8950 2.5745
34 1 3.4857 -8.0097 1.1892
35 1 5.5692 -5.6071 3.2012
36 1 10.2142 -5.9868 2.4052
37 1 12.4177 -6.8844 1.1414
38 1 11.6170 -8.4793 -0.7759
39 1 1.5327 -5.5231 1.8288
40 1 1.3333 -6.8758 0.6885
41 1 0.1612 -4.7606 -0.0453
42 1 1.3766 -5.3387 -1.2156
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000895066703.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:25:31
Heat of formation + Delta-G solvation = 52.074697 kcal
Electronic energy + Delta-G solvation = -27075.160870 eV
Core-core repulsion = 23149.658900 eV
Total energy + Delta-G solvation = -3925.501970 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-42.89868 -39.97715 -38.72212 -36.67188 -33.94883 -33.41367 -32.51615 -31.92503
-30.67208 -29.69960 -27.48766 -26.25271 -25.23804 -23.59703 -22.95834 -22.15062
-21.82731 -20.74600 -19.71830 -18.84654 -18.20630 -17.43309 -16.72315 -16.52214
-15.91723 -15.78756 -15.25422 -14.95874 -14.57272 -14.39951 -14.30680 -14.12321
-13.93641 -13.75421 -13.38914 -13.26891 -13.02926 -12.70511 -12.43657 -12.42761
-11.77919 -11.53495 -11.28447 -11.21202 -11.02291 -10.89747 -10.79654 -10.51633
-10.41399 -10.25516 -10.05739 -9.95133 -9.83991 -9.44988 -8.86684 -8.41316
-8.15305 -7.60889 -7.21629 -6.21374 -4.66482 -0.01515 0.96936 1.44824
1.47362 2.19420 2.23943 2.79049 3.14719 3.19783 3.21366 3.97464
4.02433 4.10286 4.52132 4.53439 4.58239 4.61434 4.64886 4.73094
4.92564 5.23389 5.35917 5.39899 5.46950 5.49237 5.52561 5.62067
5.66197 5.71830 5.81627 5.82936 5.87823 6.05334 6.06642 6.20686
6.43436 6.50572 6.60599 6.67919 7.06233 7.16910 7.40069 7.43656
7.58681 8.11311 8.34286 9.00426 9.41806 10.55579 10.74116
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.013982 B = 0.002517 C = 0.002229
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2002.128909 B =11122.561981 C =12560.934354
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.768 5.768
2 C 0.088 3.912
3 Si 0.906 3.094
4 H -0.280 1.280
5 H -0.267 1.267
6 H -0.267 1.267
7 C -0.545 4.545
8 H 0.072 0.928
9 C 0.560 3.440
10 O -0.579 6.579
11 N -0.645 5.645
12 C 0.130 3.870
13 C 0.037 3.963
14 N -0.531 5.531
15 C 0.127 3.873
16 C -0.195 4.195
17 C 0.042 3.958
18 N -0.446 5.446
19 C 0.121 3.879
20 C 0.039 3.961
21 C -0.138 4.138
22 C -0.216 4.216
23 C -0.017 4.017
24 O -0.169 6.169
25 S 0.143 5.857
26 C 0.046 3.954
27 C 0.126 3.874
28 H 0.269 0.731
29 H 0.049 0.951
30 H 0.095 0.905
31 H 0.038 0.962
32 H 0.075 0.925
33 H 0.058 0.942
34 H 0.088 0.912
35 H 0.178 0.822
36 H 0.160 0.840
37 H 0.156 0.844
38 H 0.211 0.789
39 H 0.038 0.962
40 H 0.075 0.925
41 H 0.088 0.912
42 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.775 -17.473 2.428 26.500
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.397 5.397
2 C -0.132 4.132
3 Si 0.731 3.269
4 H -0.205 1.205
5 H -0.192 1.192
6 H -0.192 1.192
7 C -0.581 4.581
8 H 0.090 0.910
9 C 0.366 3.634
10 O -0.462 6.462
11 N -0.383 5.383
12 C 0.005 3.995
13 C -0.092 4.092
14 N -0.257 5.257
15 C -0.002 4.002
16 C -0.317 4.317
17 C -0.111 4.111
18 N -0.161 5.161
19 C -0.152 4.152
20 C -0.014 4.014
21 C -0.163 4.163
22 C -0.235 4.235
23 C -0.087 4.087
24 O -0.064 6.064
25 S 0.400 5.600
26 C -0.083 4.083
27 C 0.001 3.999
28 H 0.080 0.920
29 H 0.067 0.933
30 H 0.113 0.887
31 H 0.056 0.944
32 H 0.093 0.907
33 H 0.076 0.924
34 H 0.106 0.894
35 H 0.195 0.805
36 H 0.177 0.823
37 H 0.174 0.826
38 H 0.227 0.773
39 H 0.056 0.944
40 H 0.094 0.906
41 H 0.106 0.894
42 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 18.971 -18.083 1.259 26.239
hybrid contribution 0.258 1.552 1.542 2.203
sum 19.228 -16.531 2.800 25.512
Atomic orbital electron populations
1.70002 1.07066 1.27430 1.35170 1.25722 0.94616 1.00290 0.92559
0.86457 0.79874 0.81087 0.79520 1.20531 1.19231 1.19202 1.20932
0.93523 0.89277 1.54377 0.91040 1.18239 0.86884 0.82178 0.76087
1.90586 1.14380 1.86084 1.55116 1.48254 1.04710 1.05831 1.79538
1.21557 0.82653 0.98576 0.96692 1.22790 0.98599 0.88934 0.98876
1.62178 1.05215 1.05999 1.52277 1.20530 0.85471 0.97351 0.96862
1.25919 1.01140 1.04203 1.00461 1.21569 0.86694 1.01233 1.01600
1.66483 1.14871 1.17729 1.17040 1.23836 0.93356 1.00790 0.97206
1.18609 0.90024 0.99524 0.93247 1.21933 0.90175 1.02160 1.01988
1.21867 1.00346 1.02474 0.98824 1.24279 0.80023 1.02547 1.01853
1.84060 1.22684 1.54623 1.45056 1.85109 0.97439 1.44335 1.33074
1.22555 0.86337 1.00004 0.99379 1.21199 0.97953 0.84372 0.96361
0.92020 0.93256 0.88744 0.94388 0.90708 0.92395 0.89379 0.80464
0.82274 0.82617 0.77256 0.94382 0.90626 0.89383 0.93213
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.77 -22.97 11.84 55.55 0.66 -22.31 16
2 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16
3 Si 0.91 20.08 29.56 -169.99 -5.02 15.06 16
4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16
5 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16
6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16
7 C -0.54 -15.24 8.86 -35.63 -0.32 -15.56 16
8 H 0.07 1.83 5.74 -52.49 -0.30 1.52 16
9 C 0.56 15.94 7.63 -12.99 -0.10 15.84 16
10 O -0.58 -18.69 14.49 5.20 0.08 -18.61 16
11 N -0.64 -14.75 3.00 -173.84 -0.52 -15.27 16
12 C 0.13 2.49 6.50 -3.36 -0.02 2.47 16
13 C 0.04 0.58 4.96 -3.46 -0.02 0.56 16
14 N -0.53 -7.65 4.77 -235.46 -1.12 -8.78 16
15 C 0.13 1.45 5.80 -4.98 -0.03 1.42 16
16 C -0.20 -2.26 4.76 -35.90 -0.17 -2.43 16
17 C 0.04 0.50 9.44 -19.36 -0.18 0.32 16
18 N -0.45 -5.75 10.52 -11.54 -0.12 -5.87 16
19 C 0.12 1.48 7.46 -14.53 -0.11 1.37 16
20 C 0.04 0.44 7.22 -36.69 -0.26 0.17 16
21 C -0.14 -1.35 10.80 -39.33 -0.42 -1.78 16
22 C -0.22 -1.58 10.88 -39.83 -0.43 -2.01 16
23 C -0.02 -0.12 12.08 29.52 0.36 0.24 16
24 O -0.17 -1.69 10.67 4.50 0.05 -1.64 16
25 S 0.14 1.60 23.42 -107.50 -2.52 -0.91 16
26 C 0.05 0.70 5.58 -3.70 -0.02 0.68 16
27 C 0.13 2.45 6.61 -3.60 -0.02 2.43 16
28 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16
29 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16
30 H 0.09 1.88 5.46 -51.93 -0.28 1.60 16
31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16
32 H 0.07 1.10 5.56 -51.93 -0.29 0.81 16
33 H 0.06 0.62 8.08 -51.92 -0.42 0.20 16
34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16
35 H 0.18 1.87 8.06 -52.49 -0.42 1.45 16
36 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16
37 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16
38 H 0.21 0.52 8.06 -52.49 -0.42 0.09 16
39 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16
40 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16
41 H 0.09 1.89 7.04 -51.93 -0.37 1.53 16
42 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16
LS Contribution 364.88 15.07 5.50 5.50
Total: -1.00 -35.33 364.88 -9.90 -45.23
By element:
Atomic # 1 Polarization: 6.54 SS G_CDS: -5.02 Total: 1.53 kcal
Atomic # 6 Polarization: 7.94 SS G_CDS: -1.85 Total: 6.09 kcal
Atomic # 7 Polarization: -51.12 SS G_CDS: -1.11 Total: -52.23 kcal
Atomic # 8 Polarization: -20.38 SS G_CDS: 0.12 Total: -20.26 kcal
Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal
Atomic # 16 Polarization: 1.60 SS G_CDS: -2.52 Total: -0.91 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -35.33 -9.90 -45.23 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000895066703.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 97.302 kcal
(2) G-P(sol) polarization free energy of solvation -35.328 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.974 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.227 kcal
(6) G-S(sol) free energy of system = (1) + (5) 52.075 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds