Wall clock time and date at job start Wed Apr 1 2020 04:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48505 * 109.47087 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47042 * 120.00217 * 3 2 1 6 6 H 1.48503 * 109.47023 * 240.00446 * 3 2 1 7 7 C 1.40044 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00321 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99681 * 354.99925 * 9 7 2 11 11 N 1.34777 * 120.00313 * 175.00114 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94953 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.46897 * 111.00153 * 172.60616 * 14 13 12 16 16 C 1.50703 * 109.47306 * 314.30128 * 15 14 13 17 17 C 1.33692 * 125.86488 * 89.99842 * 16 15 14 18 18 N 1.31324 * 115.87177 * 180.02562 * 17 16 15 19 19 C 1.30479 * 116.97284 * 359.97438 * 18 17 16 20 20 C 1.47114 * 125.48606 * 179.97438 * 19 18 17 21 21 C 1.36260 * 125.95922 * 0.02891 * 20 19 18 22 22 C 1.40778 * 106.72571 * 179.97438 * 21 20 19 23 23 C 1.34831 * 107.07088 * 0.02562 * 22 21 20 24 24 O 1.34270 * 108.72132 * 359.75393 * 23 22 21 25 25 S 1.76174 * 109.03292 * 359.73975 * 19 18 17 26 26 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 27 27 C 1.47076 * 120.88062 * 185.22734 * 11 9 7 28 28 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 30 30 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 31 31 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 32 32 H 1.08999 * 109.44526 * 173.95833 * 13 12 11 33 33 H 1.09008 * 109.47010 * 74.30063 * 15 14 13 34 34 H 1.09000 * 109.47622 * 194.30162 * 15 14 13 35 35 H 1.07999 * 122.06086 * 0.02562 * 17 16 15 36 36 H 1.08000 * 126.63746 * 359.94010 * 21 20 19 37 37 H 1.07999 * 126.46671 * 179.97438 * 22 21 20 38 38 H 1.07996 * 125.63535 * 180.02562 * 23 22 21 39 39 H 1.08994 * 109.49159 * 303.15220 * 26 14 13 40 40 H 1.08996 * 109.49043 * 183.06336 * 26 14 13 41 41 H 1.08999 * 109.63197 * 350.89564 * 27 11 9 42 42 H 1.09008 * 109.62635 * 111.48013 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2757 2.7464 -0.0006 5 1 3.0945 1.6963 1.2125 6 1 3.0944 1.6963 -1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0617 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7848 -7.0303 1.5623 16 6 5.2888 -6.9357 1.5755 17 6 6.0204 -6.2081 2.4256 18 7 7.3217 -6.2692 2.2592 19 6 7.7596 -7.0268 1.2914 20 6 9.1734 -7.2309 0.9395 21 6 10.2434 -6.6649 1.5652 22 6 11.3942 -7.1344 0.9041 23 6 10.9775 -7.9541 -0.0820 24 8 9.6365 -8.0142 -0.0546 25 16 6.3856 -7.7714 0.4780 26 6 1.7771 -5.8907 0.8322 27 6 1.2249 -4.9226 -0.2195 28 1 -0.4850 0.8400 0.0004 29 1 3.7736 -3.9711 -1.0920 30 1 3.8007 -2.6840 0.1423 31 1 3.6077 -4.3397 1.9417 32 1 4.9637 -4.8055 0.8864 33 1 3.4033 -6.8950 2.5745 34 1 3.4857 -8.0097 1.1892 35 1 5.5692 -5.6071 3.2012 36 1 10.2142 -5.9868 2.4052 37 1 12.4177 -6.8844 1.1414 38 1 11.6170 -8.4793 -0.7759 39 1 1.5327 -5.5231 1.8288 40 1 1.3333 -6.8758 0.6885 41 1 0.1612 -4.7606 -0.0453 42 1 1.3766 -5.3387 -1.2156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895066703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:30 Heat of formation + Delta-G solvation = 26.750493 kcal Electronic energy + Delta-G solvation = -27076.259010 eV Core-core repulsion = 23149.658900 eV Total energy + Delta-G solvation = -3926.600110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.54715 -40.99011 -40.18155 -38.41269 -35.53700 -34.64308 -34.12337 -32.97579 -31.98410 -30.74635 -29.00122 -27.80616 -26.38207 -24.83508 -24.33306 -22.93235 -22.51688 -22.31748 -20.63473 -20.43089 -19.09896 -18.48453 -18.15070 -17.84786 -17.23926 -16.71783 -16.59840 -16.12240 -16.06898 -15.92330 -15.55316 -15.37339 -15.28340 -14.97341 -14.45349 -14.26715 -13.89784 -13.82947 -13.69610 -13.46007 -13.34293 -13.13183 -12.92154 -12.70860 -12.69691 -12.26505 -12.22076 -12.03772 -12.01443 -11.86843 -11.12053 -10.93283 -10.83729 -10.64981 -10.30782 -9.81479 -9.54794 -9.07203 -8.97004 -8.30651 -6.85682 -0.85170 0.11520 0.59684 0.74395 1.38461 1.41613 1.53064 1.53912 1.58427 1.94767 2.22235 2.44141 2.71052 2.98824 3.32890 3.57687 3.64859 3.83472 3.95780 4.01792 4.04166 4.09296 4.18776 4.33293 4.36799 4.39796 4.55260 4.63606 4.67412 4.73033 4.76744 4.86720 4.93558 4.96398 5.01500 5.04499 5.15179 5.35770 5.48392 5.70434 5.90182 5.94305 5.96822 6.11068 6.39667 6.53897 6.86289 7.39496 8.44577 8.65396 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.002517 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.128909 B =11122.561981 C =12560.934354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.030 3.970 3 Si 0.993 3.007 4 H -0.274 1.274 5 H -0.254 1.254 6 H -0.254 1.254 7 C -0.570 4.570 8 H 0.091 0.909 9 C 0.542 3.458 10 O -0.632 6.632 11 N -0.647 5.647 12 C 0.127 3.873 13 C 0.052 3.948 14 N -0.534 5.534 15 C 0.132 3.868 16 C -0.204 4.204 17 C 0.039 3.961 18 N -0.470 5.470 19 C 0.117 3.883 20 C 0.001 3.999 21 C -0.140 4.140 22 C -0.225 4.225 23 C -0.001 4.001 24 O -0.183 6.183 25 S 0.155 5.845 26 C 0.060 3.940 27 C 0.121 3.879 28 H 0.274 0.726 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.029 0.971 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.186 0.814 36 H 0.158 0.842 37 H 0.183 0.817 38 H 0.254 0.746 39 H 0.026 0.974 40 H 0.112 0.888 41 H 0.059 0.941 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.001 -18.453 2.211 29.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.185 4.185 3 Si 0.813 3.187 4 H -0.199 1.199 5 H -0.178 1.178 6 H -0.178 1.178 7 C -0.606 4.606 8 H 0.109 0.891 9 C 0.349 3.651 10 O -0.519 6.519 11 N -0.384 5.384 12 C 0.003 3.997 13 C -0.077 4.077 14 N -0.259 5.259 15 C 0.003 3.997 16 C -0.326 4.326 17 C -0.115 4.115 18 N -0.186 5.186 19 C -0.155 4.155 20 C -0.052 4.052 21 C -0.165 4.165 22 C -0.244 4.244 23 C -0.070 4.070 24 O -0.079 6.079 25 S 0.413 5.587 26 C -0.069 4.069 27 C -0.003 4.003 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.048 0.952 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.127 0.873 35 H 0.203 0.797 36 H 0.176 0.824 37 H 0.200 0.800 38 H 0.270 0.730 39 H 0.044 0.956 40 H 0.130 0.870 41 H 0.078 0.922 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 22.242 -19.126 1.043 29.353 hybrid contribution -0.585 1.719 1.555 2.391 sum 21.657 -17.406 2.598 27.906 Atomic orbital electron populations 1.70177 1.09492 1.28977 1.36476 1.26967 0.95500 1.04868 0.91202 0.85134 0.78309 0.74949 0.80343 1.19859 1.17811 1.17782 1.21454 0.94679 0.89906 1.54595 0.89146 1.18618 0.86533 0.84109 0.75881 1.90533 1.16518 1.87368 1.57510 1.48123 1.06385 1.05679 1.78253 1.21691 0.80279 0.99356 0.98361 1.22554 0.99308 0.88873 0.96935 1.62120 1.04418 1.05803 1.53565 1.20587 0.85204 0.96898 0.97029 1.25903 1.01158 1.04731 1.00816 1.21751 0.86617 1.01255 1.01844 1.66508 1.15390 1.18789 1.17913 1.24125 0.94278 1.00229 0.96869 1.18690 0.89964 1.01628 0.94917 1.22187 0.91030 1.01539 1.01725 1.22215 1.00882 1.02562 0.98740 1.25246 0.79070 1.01189 1.01532 1.84060 1.24285 1.54641 1.44869 1.84998 0.96952 1.44076 1.32716 1.22377 0.87159 1.00388 0.96952 1.21345 0.96438 0.83936 0.98557 0.91582 0.92442 0.89904 0.95237 0.89241 0.91172 0.87291 0.79682 0.82441 0.79978 0.72988 0.95557 0.86977 0.92240 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.83 11.84 21.83 0.26 -50.57 16 2 C 0.03 1.68 5.50 85.30 0.47 2.15 16 3 Si 0.99 41.34 29.56 68.60 2.03 43.36 16 4 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 6 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 7 C -0.57 -32.62 8.86 24.83 0.22 -32.40 16 8 H 0.09 4.65 5.74 -2.91 -0.02 4.63 16 9 C 0.54 32.10 7.63 86.36 0.66 32.76 16 10 O -0.63 -42.97 14.49 -4.31 -0.06 -43.04 16 11 N -0.65 -30.31 3.00 -822.12 -2.47 -32.77 16 12 C 0.13 4.84 6.50 86.50 0.56 5.40 16 13 C 0.05 1.59 4.96 86.54 0.43 2.02 16 14 N -0.53 -14.35 4.77 -898.87 -4.29 -18.64 16 15 C 0.13 2.66 5.80 85.56 0.50 3.15 16 16 C -0.20 -4.36 4.76 24.65 0.12 -4.25 16 17 C 0.04 0.87 9.44 83.74 0.79 1.66 16 18 N -0.47 -11.85 10.52 -190.41 -2.00 -13.85 16 19 C 0.12 2.79 7.46 87.23 0.65 3.44 16 20 C 0.00 0.01 7.22 24.14 0.17 0.19 16 21 C -0.14 -2.59 10.80 22.43 0.24 -2.34 16 22 C -0.23 -2.71 10.88 22.11 0.24 -2.47 16 23 C 0.00 -0.01 12.08 67.04 0.81 0.80 16 24 O -0.18 -3.34 10.67 -6.81 -0.07 -3.42 16 25 S 0.15 3.26 23.42 -56.49 -1.32 1.93 16 26 C 0.06 1.76 5.58 86.38 0.48 2.24 16 27 C 0.12 4.78 6.61 86.35 0.57 5.35 16 28 H 0.27 15.40 8.29 -92.71 -0.77 14.63 16 29 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.08 3.32 5.46 -2.39 -0.01 3.31 16 31 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 2.51 5.56 -2.39 -0.01 2.50 16 33 H 0.07 1.30 8.08 -2.38 -0.02 1.28 16 34 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.19 3.72 8.06 -2.91 -0.02 3.70 16 36 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16 37 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 38 H 0.25 0.10 8.06 -2.91 -0.02 0.07 16 39 H 0.03 0.84 8.14 -2.39 -0.02 0.83 16 40 H 0.11 2.52 8.11 -2.39 -0.02 2.50 16 41 H 0.06 2.68 7.04 -2.39 -0.02 2.67 16 42 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -81.09 364.88 0.04 -81.05 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 1.06 Total: 18.24 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 6.91 Total: 17.71 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -8.50 Total: -115.84 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -0.14 Total: -46.45 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.32 Total: 1.93 kcal Total: -81.09 0.04 -81.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895066703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.801 kcal (2) G-P(sol) polarization free energy of solvation -81.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds