Wall clock time and date at job start Wed Apr 1 2020 04:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86807 * 119.99682 * 2 1 4 4 H 1.48503 * 109.46836 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46858 * 299.99543 * 3 2 1 6 6 H 1.48496 * 109.47268 * 59.99911 * 3 2 1 7 7 C 1.39927 * 120.00495 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00233 * 192.33034 * 7 2 1 9 9 C 1.41407 * 120.00037 * 12.32281 * 7 2 1 10 10 C 1.40787 * 120.20284 * 28.24082 * 9 7 2 11 11 C 1.37652 * 119.89120 * 180.02562 * 10 9 7 12 12 C 1.38521 * 120.32558 * 359.74529 * 11 10 9 13 13 C 1.39291 * 120.42488 * 0.51240 * 12 11 10 14 14 N 1.39680 * 119.95433 * 179.75852 * 13 12 11 15 15 S 1.65599 * 120.00245 * 313.69592 * 14 13 12 16 16 O 1.42105 * 106.40221 * 184.16415 * 15 14 13 17 17 O 1.42105 * 106.40057 * 51.24705 * 15 14 13 18 18 C 1.76200 * 107.21890 * 297.70869 * 15 14 13 19 19 C 1.34852 * 126.65344 * 330.96827 * 18 15 14 20 20 N 1.34292 * 108.07284 * 179.97438 * 19 18 15 21 21 C 1.30091 * 109.20867 * 359.96742 * 20 19 18 22 22 N 1.35422 * 108.62993 * 0.07340 * 21 20 19 23 23 C 1.46467 * 124.82638 * 179.84657 * 22 21 20 24 24 C 1.53264 * 108.79617 * 342.89856 * 23 22 21 25 25 C 1.53315 * 109.48644 * 50.40739 * 24 23 22 26 26 C 1.51047 * 127.38815 * 180.10725 * 21 20 19 27 27 C 1.38321 * 120.09670 * 359.48893 * 13 12 11 28 28 H 0.96995 * 120.00500 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.05548 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.83412 * 180.02562 * 11 10 9 31 31 H 1.08003 * 119.78911 * 180.27194 * 12 11 10 32 32 H 0.97007 * 119.99931 * 133.69385 * 14 13 12 33 33 H 1.08000 * 125.96628 * 359.97438 * 19 18 15 34 34 H 1.09003 * 109.58308 * 102.69088 * 23 22 21 35 35 H 1.09003 * 109.58568 * 223.10739 * 23 22 21 36 36 H 1.09005 * 109.46687 * 170.37810 * 24 23 22 37 37 H 1.09000 * 109.46991 * 290.36875 * 24 23 22 38 38 H 1.08995 * 109.55396 * 170.57981 * 25 24 23 39 39 H 1.09001 * 109.53986 * 50.39395 * 25 24 23 40 40 H 1.09001 * 109.71442 * 283.70939 * 26 21 20 41 41 H 1.08994 * 109.71703 * 44.31254 * 26 21 20 42 42 H 1.07998 * 120.16665 * 180.23320 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8834 2.3964 -1.2126 6 1 1.8834 2.3965 1.2124 7 6 2.0080 -1.2117 -0.0005 8 1 3.0693 -1.2226 0.1992 9 6 1.3255 -2.4222 -0.2624 10 6 0.1724 -2.4247 -1.0702 11 6 -0.4873 -3.6066 -1.3205 12 6 -0.0192 -4.7956 -0.7858 13 6 1.1172 -4.8079 0.0195 14 7 1.5776 -6.0118 0.5578 15 16 0.5136 -7.0593 1.2739 16 8 1.2924 -8.1251 1.8000 17 8 -0.5439 -7.2545 0.3449 18 6 -0.1880 -6.2250 2.6582 19 6 0.3968 -5.2614 3.3985 20 7 -0.4683 -4.8886 4.3556 21 6 -1.5629 -5.5814 4.2365 22 7 -1.4271 -6.4283 3.1885 23 6 -2.4503 -7.3758 2.7408 24 6 -3.4778 -7.5599 3.8630 25 6 -3.9516 -6.1866 4.3529 26 6 -2.8024 -5.4928 5.0953 27 6 1.7937 -3.6304 0.2825 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1944 -1.5007 -1.4921 30 1 -1.3715 -3.6075 -1.9407 31 1 -0.5411 -5.7186 -0.9914 32 1 2.5207 -6.2343 0.5121 33 1 1.3879 -4.8595 3.2479 34 1 -2.9460 -6.9853 1.8520 35 1 -1.9850 -8.3343 2.5107 36 1 -4.3305 -8.1246 3.4858 37 1 -3.0196 -8.1029 4.6896 38 1 -4.7979 -6.3123 5.0282 39 1 -4.2530 -5.5792 3.4996 40 1 -2.6259 -5.9917 6.0482 41 1 -3.0553 -4.4470 5.2691 42 1 2.6771 -3.6392 0.9037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901932661.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:16 Heat of formation + Delta-G solvation = 0.598877 kcal Electronic energy + Delta-G solvation = -28674.499159 eV Core-core repulsion = 24746.765030 eV Total energy + Delta-G solvation = -3927.734129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.31002 -38.08265 -37.03890 -36.74039 -35.75446 -34.81501 -33.40540 -32.95729 -30.02165 -29.91339 -28.77381 -27.79688 -25.31771 -24.59827 -22.62054 -21.93225 -21.18197 -21.02352 -19.64582 -18.94130 -17.99878 -17.47548 -17.22034 -16.20900 -15.77528 -15.48558 -15.31554 -14.79464 -14.70540 -14.63481 -14.53267 -14.38654 -13.89433 -13.54897 -13.04541 -12.92478 -12.57958 -12.20058 -12.13725 -12.03986 -11.95318 -11.84874 -11.58542 -11.46943 -11.39573 -11.38022 -11.15354 -11.12461 -10.99432 -10.41448 -10.03946 -9.95465 -9.83380 -9.64809 -9.35222 -9.21507 -8.65207 -7.55513 -7.20317 -6.76259 -4.44467 0.48327 1.61641 2.59457 2.71575 2.81930 3.06129 3.06728 3.11313 3.14355 3.17101 3.72483 3.91650 4.09401 4.25844 4.36894 4.39572 4.57331 4.81514 4.97565 5.02953 5.14301 5.21566 5.38105 5.38562 5.49132 5.52673 5.53689 5.65771 5.84169 5.84414 6.10273 6.28337 6.53274 6.62699 6.82657 6.92009 6.97684 7.05926 7.15572 7.24060 7.58732 7.77479 7.94802 7.96036 7.98880 8.19970 8.56012 8.83180 8.86745 10.18020 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012350 B = 0.003889 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.589571 B = 7197.320221 C = 8255.721699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.462 4.462 8 H 0.079 0.921 9 C 0.120 3.880 10 C -0.156 4.156 11 C -0.094 4.094 12 C -0.254 4.254 13 C 0.143 3.857 14 N -1.041 6.041 15 S 2.721 3.279 16 O -0.964 6.964 17 O -0.949 6.949 18 C -0.588 4.588 19 C 0.106 3.894 20 N -0.491 5.491 21 C 0.246 3.754 22 N -0.403 5.403 23 C 0.087 3.913 24 C -0.134 4.134 25 C -0.128 4.128 26 C -0.038 4.038 27 C -0.221 4.221 28 H 0.280 0.720 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.420 0.580 33 H 0.182 0.818 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.460 -10.800 6.623 14.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.492 4.492 8 H 0.097 0.903 9 C 0.116 3.884 10 C -0.176 4.176 11 C -0.113 4.113 12 C -0.276 4.276 13 C 0.050 3.950 14 N -0.795 5.795 15 S 2.807 3.193 16 O -0.954 6.954 17 O -0.938 6.938 18 C -0.784 4.784 19 C -0.049 4.049 20 N -0.209 5.209 21 C -0.018 4.018 22 N -0.084 5.084 23 C -0.035 4.035 24 C -0.172 4.172 25 C -0.166 4.166 26 C -0.077 4.077 27 C -0.245 4.245 28 H 0.091 0.909 29 H 0.139 0.861 30 H 0.112 0.888 31 H 0.140 0.860 32 H 0.257 0.743 33 H 0.199 0.801 34 H 0.122 0.878 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.120 0.880 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.026 -11.047 6.961 14.828 hybrid contribution 0.674 0.850 -0.147 1.094 sum -6.352 -10.198 6.814 13.812 Atomic orbital electron populations 1.69796 1.07484 1.29076 1.36017 1.25879 0.94791 1.01273 0.92276 0.86234 0.80854 0.80943 0.78531 1.18422 1.19768 1.19990 1.19578 0.96370 0.90461 1.42768 0.90303 1.17459 0.91259 0.91550 0.88099 1.21478 0.98547 0.96781 1.00789 1.20587 0.98488 0.92782 0.99431 1.20988 1.01214 0.99157 1.06276 1.17092 0.97202 0.83041 0.97655 1.52755 1.22208 1.34011 1.70569 1.01380 0.73435 0.71886 0.72612 1.93593 1.70214 1.50949 1.80614 1.93552 1.56460 1.83963 1.59862 1.33347 0.96936 1.22572 1.25526 1.22345 0.99529 0.92579 0.90478 1.70125 1.01167 1.25178 1.24429 1.23798 0.97229 0.90154 0.90632 1.44842 1.10758 1.29427 1.23365 1.22312 0.88945 0.92689 0.99573 1.21956 0.98613 0.98623 0.97977 1.21756 0.97833 0.95691 1.01370 1.20325 0.87355 1.03673 0.96336 1.20988 1.04345 0.91731 1.07409 0.90927 0.86107 0.88758 0.85976 0.74306 0.80071 0.87806 0.89149 0.88696 0.90432 0.89562 0.90532 0.88804 0.88028 0.88177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.29 10.89 55.55 0.60 -19.69 16 2 C 0.07 1.84 5.23 -17.35 -0.09 1.75 16 3 Si 0.91 18.37 29.58 -169.99 -5.03 13.34 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.46 -11.80 9.06 -37.74 -0.34 -12.14 16 8 H 0.08 1.93 7.88 -52.49 -0.41 1.52 16 9 C 0.12 3.05 5.55 -106.85 -0.59 2.46 16 10 C -0.16 -3.92 8.66 -38.83 -0.34 -4.26 16 11 C -0.09 -2.16 10.02 -39.69 -0.40 -2.56 16 12 C -0.25 -5.65 9.22 -39.09 -0.36 -6.01 16 13 C 0.14 3.02 6.14 -83.86 -0.51 2.50 16 14 N -1.04 -17.86 5.70 32.37 0.18 -17.67 16 15 S 2.72 46.74 5.63 -107.50 -0.61 46.14 16 16 O -0.96 -17.42 18.02 -57.17 -1.03 -18.45 16 17 O -0.95 -17.61 14.43 -57.17 -0.82 -18.44 16 18 C -0.59 -10.42 6.81 -16.76 -0.11 -10.53 16 19 C 0.11 1.96 11.76 -17.68 -0.21 1.75 16 20 N -0.49 -9.13 11.24 -10.62 -0.12 -9.24 16 21 C 0.25 3.86 7.65 -155.24 -1.19 2.68 16 22 N -0.40 -6.34 3.13 -112.79 -0.35 -6.70 16 23 C 0.09 1.03 6.17 -3.92 -0.02 1.01 16 24 C -0.13 -1.07 5.95 -26.43 -0.16 -1.22 16 25 C -0.13 -1.03 5.97 -26.36 -0.16 -1.18 16 26 C -0.04 -0.40 6.33 -27.51 -0.17 -0.57 16 27 C -0.22 -5.05 9.71 -38.67 -0.38 -5.42 16 28 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 29 H 0.12 3.14 6.23 -52.49 -0.33 2.81 16 30 H 0.09 1.95 8.06 -52.48 -0.42 1.53 16 31 H 0.12 2.62 5.68 -52.48 -0.30 2.33 16 32 H 0.42 5.92 8.96 -34.47 -0.31 5.61 16 33 H 0.18 3.05 8.06 -52.49 -0.42 2.63 16 34 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 38 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 360.45 15.07 5.43 5.43 Total: -1.00 -32.89 360.45 -11.90 -44.79 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -5.13 Total: 12.25 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: -5.03 Total: -31.76 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.32 Total: -53.30 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -1.86 Total: -36.89 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Atomic # 16 Polarization: 46.74 SS G_CDS: -0.61 Total: 46.14 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.89 -11.90 -44.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901932661.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.392 kcal (2) G-P(sol) polarization free energy of solvation -32.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds