Wall clock time and date at job start Wed Apr 1 2020 04:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86807 * 119.99682 * 2 1 4 4 H 1.48503 * 109.46836 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46858 * 299.99543 * 3 2 1 6 6 H 1.48496 * 109.47268 * 59.99911 * 3 2 1 7 7 C 1.39927 * 120.00495 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00233 * 192.33034 * 7 2 1 9 9 C 1.41407 * 120.00037 * 12.32281 * 7 2 1 10 10 C 1.40787 * 120.20284 * 28.24082 * 9 7 2 11 11 C 1.37652 * 119.89120 * 180.02562 * 10 9 7 12 12 C 1.38521 * 120.32558 * 359.74529 * 11 10 9 13 13 C 1.39291 * 120.42488 * 0.51240 * 12 11 10 14 14 N 1.39680 * 119.95433 * 179.75852 * 13 12 11 15 15 S 1.65599 * 120.00245 * 313.69592 * 14 13 12 16 16 O 1.42105 * 106.40221 * 184.16415 * 15 14 13 17 17 O 1.42105 * 106.40057 * 51.24705 * 15 14 13 18 18 C 1.76200 * 107.21890 * 297.70869 * 15 14 13 19 19 C 1.34852 * 126.65344 * 330.96827 * 18 15 14 20 20 N 1.34292 * 108.07284 * 179.97438 * 19 18 15 21 21 C 1.30091 * 109.20867 * 359.96742 * 20 19 18 22 22 N 1.35422 * 108.62993 * 0.07340 * 21 20 19 23 23 C 1.46467 * 124.82638 * 179.84657 * 22 21 20 24 24 C 1.53264 * 108.79617 * 342.89856 * 23 22 21 25 25 C 1.53315 * 109.48644 * 50.40739 * 24 23 22 26 26 C 1.51047 * 127.38815 * 180.10725 * 21 20 19 27 27 C 1.38321 * 120.09670 * 359.48893 * 13 12 11 28 28 H 0.96995 * 120.00500 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.05548 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.83412 * 180.02562 * 11 10 9 31 31 H 1.08003 * 119.78911 * 180.27194 * 12 11 10 32 32 H 0.97007 * 119.99931 * 133.69385 * 14 13 12 33 33 H 1.08000 * 125.96628 * 359.97438 * 19 18 15 34 34 H 1.09003 * 109.58308 * 102.69088 * 23 22 21 35 35 H 1.09003 * 109.58568 * 223.10739 * 23 22 21 36 36 H 1.09005 * 109.46687 * 170.37810 * 24 23 22 37 37 H 1.09000 * 109.46991 * 290.36875 * 24 23 22 38 38 H 1.08995 * 109.55396 * 170.57981 * 25 24 23 39 39 H 1.09001 * 109.53986 * 50.39395 * 25 24 23 40 40 H 1.09001 * 109.71442 * 283.70939 * 26 21 20 41 41 H 1.08994 * 109.71703 * 44.31254 * 26 21 20 42 42 H 1.07998 * 120.16665 * 180.23320 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8834 2.3964 -1.2126 6 1 1.8834 2.3965 1.2124 7 6 2.0080 -1.2117 -0.0005 8 1 3.0693 -1.2226 0.1992 9 6 1.3255 -2.4222 -0.2624 10 6 0.1724 -2.4247 -1.0702 11 6 -0.4873 -3.6066 -1.3205 12 6 -0.0192 -4.7956 -0.7858 13 6 1.1172 -4.8079 0.0195 14 7 1.5776 -6.0118 0.5578 15 16 0.5136 -7.0593 1.2739 16 8 1.2924 -8.1251 1.8000 17 8 -0.5439 -7.2545 0.3449 18 6 -0.1880 -6.2250 2.6582 19 6 0.3968 -5.2614 3.3985 20 7 -0.4683 -4.8886 4.3556 21 6 -1.5629 -5.5814 4.2365 22 7 -1.4271 -6.4283 3.1885 23 6 -2.4503 -7.3758 2.7408 24 6 -3.4778 -7.5599 3.8630 25 6 -3.9516 -6.1866 4.3529 26 6 -2.8024 -5.4928 5.0953 27 6 1.7937 -3.6304 0.2825 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1944 -1.5007 -1.4921 30 1 -1.3715 -3.6075 -1.9407 31 1 -0.5411 -5.7186 -0.9914 32 1 2.5207 -6.2343 0.5121 33 1 1.3879 -4.8595 3.2479 34 1 -2.9460 -6.9853 1.8520 35 1 -1.9850 -8.3343 2.5107 36 1 -4.3305 -8.1246 3.4858 37 1 -3.0196 -8.1029 4.6896 38 1 -4.7979 -6.3123 5.0282 39 1 -4.2530 -5.5792 3.4996 40 1 -2.6259 -5.9917 6.0482 41 1 -3.0553 -4.4470 5.2691 42 1 2.6771 -3.6392 0.9037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901932661.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:15 Heat of formation + Delta-G solvation = -20.390270 kcal Electronic energy + Delta-G solvation = -28675.409317 eV Core-core repulsion = 24746.765030 eV Total energy + Delta-G solvation = -3928.644287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.51456 -39.83795 -38.47958 -37.68259 -37.20393 -36.51777 -34.76022 -34.43363 -31.77622 -31.04573 -29.87412 -29.55000 -27.19531 -25.49765 -23.66038 -23.18223 -22.89540 -22.81369 -20.90008 -20.11936 -19.57168 -18.91198 -18.65583 -17.55395 -17.27288 -17.00409 -16.76595 -16.44510 -16.22848 -15.60764 -15.53888 -15.29812 -15.20859 -14.84574 -14.75562 -14.26545 -13.96016 -13.84750 -13.56622 -13.50899 -13.28108 -13.14107 -13.08044 -13.00154 -12.84035 -12.74594 -12.16294 -12.08138 -12.05171 -11.95374 -11.78645 -11.62056 -11.28157 -11.14141 -11.00434 -10.86742 -9.91694 -9.41889 -9.00048 -8.59652 -6.37791 -0.93812 0.33340 0.93137 1.00076 1.40689 1.45694 1.50492 1.54984 1.72955 1.78677 2.22633 2.34810 2.73298 3.15300 3.40783 3.44296 3.60656 3.64630 3.67109 3.99524 4.10240 4.22315 4.24841 4.28064 4.40140 4.52055 4.71816 4.73686 4.78083 4.86089 4.99046 5.03087 5.04770 5.07821 5.21998 5.27367 5.30026 5.34037 5.49947 5.81403 5.93443 6.03417 6.08982 6.15189 6.34377 6.67786 6.69228 6.93581 6.99239 8.36752 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012350 B = 0.003889 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.589571 B = 7197.320221 C = 8255.721699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.256 1.256 5 H -0.265 1.265 6 H -0.270 1.270 7 C -0.494 4.494 8 H 0.080 0.920 9 C 0.093 3.907 10 C -0.182 4.182 11 C -0.095 4.095 12 C -0.261 4.261 13 C 0.161 3.839 14 N -1.035 6.035 15 S 2.745 3.255 16 O -0.969 6.969 17 O -0.960 6.960 18 C -0.607 4.607 19 C 0.084 3.916 20 N -0.530 5.530 21 C 0.246 3.754 22 N -0.406 5.406 23 C 0.068 3.932 24 C -0.127 4.127 25 C -0.123 4.123 26 C -0.041 4.041 27 C -0.229 4.229 28 H 0.286 0.714 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.133 0.867 32 H 0.435 0.565 33 H 0.184 0.816 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.087 0.913 38 H 0.123 0.877 39 H 0.064 0.936 40 H 0.118 0.882 41 H 0.103 0.897 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.524 -11.815 7.612 15.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.180 1.180 5 H -0.190 1.190 6 H -0.195 1.195 7 C -0.524 4.524 8 H 0.098 0.902 9 C 0.090 3.910 10 C -0.202 4.202 11 C -0.114 4.114 12 C -0.283 4.283 13 C 0.067 3.933 14 N -0.790 5.790 15 S 2.832 3.168 16 O -0.959 6.959 17 O -0.950 6.950 18 C -0.803 4.803 19 C -0.072 4.072 20 N -0.248 5.248 21 C -0.019 4.019 22 N -0.086 5.086 23 C -0.053 4.053 24 C -0.164 4.164 25 C -0.161 4.161 26 C -0.080 4.080 27 C -0.253 4.253 28 H 0.097 0.903 29 H 0.123 0.877 30 H 0.132 0.868 31 H 0.150 0.850 32 H 0.274 0.726 33 H 0.201 0.799 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.145 0.855 37 H 0.105 0.895 38 H 0.141 0.859 39 H 0.083 0.917 40 H 0.136 0.864 41 H 0.122 0.878 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.086 -12.103 7.932 16.576 hybrid contribution 0.952 1.027 -0.409 1.458 sum -7.134 -11.076 7.523 15.171 Atomic orbital electron populations 1.69862 1.08922 1.30310 1.36639 1.26715 0.95512 1.04434 0.91316 0.85162 0.79493 0.76362 0.78722 1.17955 1.18963 1.19505 1.19852 0.96673 0.91519 1.44346 0.90176 1.17805 0.91850 0.92700 0.88673 1.21414 0.99587 0.96940 1.02254 1.20825 0.98859 0.92418 0.99323 1.21202 1.01600 0.99210 1.06302 1.16978 0.96238 0.83758 0.96357 1.52630 1.23387 1.32528 1.70489 1.00568 0.72848 0.71306 0.72120 1.93585 1.70463 1.51131 1.80699 1.93525 1.56843 1.84174 1.60468 1.33295 0.98327 1.22887 1.25798 1.22569 1.00144 0.93288 0.91180 1.70099 1.02532 1.26858 1.25358 1.24803 0.97803 0.88769 0.90552 1.45174 1.10600 1.29827 1.23036 1.22775 0.89138 0.92023 1.01333 1.22039 0.98414 0.99106 0.96862 1.21796 0.97801 0.95080 1.01443 1.20675 0.85914 1.04632 0.96764 1.21148 1.05007 0.91630 1.07489 0.90305 0.87726 0.86769 0.84952 0.72562 0.79862 0.88198 0.88562 0.85466 0.89468 0.85864 0.91741 0.86391 0.87839 0.86829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.35 10.89 21.82 0.24 -43.11 16 2 C 0.03 1.71 5.23 85.25 0.45 2.16 16 3 Si 0.98 37.96 29.58 68.60 2.03 39.99 16 4 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 6 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 7 C -0.49 -25.93 9.06 23.46 0.21 -25.72 16 8 H 0.08 4.02 7.88 -2.91 -0.02 4.00 16 9 C 0.09 4.87 5.55 -21.31 -0.12 4.75 16 10 C -0.18 -9.43 8.66 22.75 0.20 -9.23 16 11 C -0.10 -4.44 10.02 22.20 0.22 -4.22 16 12 C -0.26 -11.53 9.22 22.59 0.21 -11.32 16 13 C 0.16 6.75 6.14 38.16 0.23 6.99 16 14 N -1.03 -34.81 5.70 -51.49 -0.29 -35.10 16 15 S 2.75 92.21 5.63 -56.49 -0.32 91.89 16 16 O -0.97 -33.96 18.02 -128.00 -2.31 -36.27 16 17 O -0.96 -34.67 14.43 -128.00 -1.85 -36.52 16 18 C -0.61 -21.36 6.81 83.22 0.57 -20.79 16 19 C 0.08 3.15 11.76 83.54 0.98 4.13 16 20 N -0.53 -19.88 11.24 -187.51 -2.11 -21.99 16 21 C 0.25 7.52 7.65 138.24 1.06 8.57 16 22 N -0.41 -12.45 3.13 -510.77 -1.60 -14.05 16 23 C 0.07 1.50 6.17 86.47 0.53 2.03 16 24 C -0.13 -1.59 5.95 30.79 0.18 -1.40 16 25 C -0.12 -1.56 5.97 30.83 0.18 -1.38 16 26 C -0.04 -0.77 6.33 30.09 0.19 -0.58 16 27 C -0.23 -10.61 9.71 22.86 0.22 -10.39 16 28 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 29 H 0.10 5.68 6.23 -2.91 -0.02 5.67 16 30 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 31 H 0.13 5.56 5.68 -2.91 -0.02 5.55 16 32 H 0.43 11.82 8.96 -96.74 -0.87 10.96 16 33 H 0.18 6.40 8.06 -2.91 -0.02 6.38 16 34 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.09 0.97 8.12 -2.39 -0.02 0.95 16 38 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.06 1.00 8.12 -2.39 -0.02 0.98 16 40 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -72.45 360.45 -0.68 -73.13 By element: Atomic # 1 Polarization: 38.23 SS G_CDS: 0.20 Total: 38.43 kcal Atomic # 6 Polarization: -61.72 SS G_CDS: 5.32 Total: -56.40 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -3.77 Total: -114.26 kcal Atomic # 8 Polarization: -68.63 SS G_CDS: -4.15 Total: -72.79 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Atomic # 16 Polarization: 92.21 SS G_CDS: -0.32 Total: 91.89 kcal Total: -72.45 -0.68 -73.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901932661.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.742 kcal (2) G-P(sol) polarization free energy of solvation -72.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds