Wall clock time and date at job start Wed Apr 1 2020 04:15:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86805 * 119.99740 * 2 1
4 4 H 1.48499 * 109.47094 * 269.99913 * 3 2 1
5 5 H 1.48499 * 109.46907 * 29.99673 * 3 2 1
6 6 H 1.48495 * 109.46933 * 149.99974 * 3 2 1
7 7 C 1.37867 * 120.00203 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00380 * 180.02562 * 7 2 1
9 9 C 1.50697 * 120.00258 * 359.97438 * 7 2 1
10 10 H 1.09001 * 109.47066 * 60.00261 * 9 7 2
11 11 N 1.46504 * 109.47650 * 180.02562 * 9 7 2
12 12 C 1.34773 * 120.00111 * 205.00149 * 11 9 7
13 13 O 1.21277 * 120.00090 * 0.02562 * 12 11 9
14 14 C 1.50703 * 119.99847 * 179.97438 * 12 11 9
15 15 O 1.42901 * 109.47052 * 180.02562 * 14 12 11
16 16 C 1.42901 * 113.99898 * 179.97438 * 15 14 12
17 17 C 1.53002 * 109.46876 * 179.97438 * 16 15 14
18 18 O 1.42904 * 109.46899 * 65.00673 * 17 16 15
19 19 C 1.35901 * 117.00133 * 179.97438 * 18 17 16
20 20 C 1.38733 * 120.05231 * 359.72336 * 19 18 17
21 21 C 1.38146 * 119.94171 * 179.74423 * 20 19 18
22 22 C 1.38266 * 120.05491 * 0.50835 * 21 20 19
23 23 C 1.38267 * 120.11113 * 359.76607 * 22 21 20
24 24 C 1.38148 * 120.05616 * 359.97438 * 23 22 21
25 25 C 1.53006 * 109.47239 * 300.00370 * 9 7 2
26 26 F 1.39900 * 109.46764 * 299.99857 * 25 9 7
27 27 F 1.39895 * 109.46931 * 59.99600 * 25 9 7
28 28 F 1.39897 * 109.47129 * 179.97438 * 25 9 7
29 29 H 0.97006 * 120.00645 * 0.02562 * 1 2 3
30 30 H 0.97003 * 119.99624 * 24.99831 * 11 9 7
31 31 H 1.08999 * 109.46659 * 299.99752 * 14 12 11
32 32 H 1.08988 * 109.47257 * 59.99966 * 14 12 11
33 33 H 1.08990 * 109.47317 * 300.00024 * 16 15 14
34 34 H 1.08994 * 109.46562 * 60.00219 * 16 15 14
35 35 H 1.08999 * 109.47107 * 185.00205 * 17 16 15
36 36 H 1.08997 * 109.47393 * 305.00461 * 17 16 15
37 37 H 1.08004 * 120.02998 * 359.97438 * 20 19 18
38 38 H 1.08000 * 119.97405 * 180.27719 * 21 20 19
39 39 H 1.08000 * 119.94301 * 179.74514 * 22 21 20
40 40 H 1.08000 * 119.97325 * 179.97438 * 23 22 21
41 41 H 1.08001 * 120.02452 * 179.97438 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4464 2.6527 0.7000
6 1 3.5466 1.4403 0.7000
7 6 2.0045 -1.1939 0.0005
8 1 3.0845 -1.1940 0.0010
9 6 1.2511 -2.4991 0.0017
10 1 0.6241 -2.5575 -0.8880
11 7 2.2031 -3.6126 0.0027
12 6 1.8370 -4.8127 -0.4895
13 8 0.7196 -4.9706 -0.9337
14 6 2.8166 -5.9579 -0.4890
15 8 2.1982 -7.1139 -1.0578
16 6 3.0466 -8.2628 -1.1055
17 6 2.2846 -9.4339 -1.7290
18 8 1.9800 -9.1321 -3.0922
19 6 1.3005 -10.0755 -3.7960
20 6 0.9395 -11.2694 -3.1887
21 6 0.2442 -12.2246 -3.9048
22 6 -0.0827 -11.9958 -5.2286
23 6 0.2809 -10.8090 -5.8377
24 6 0.9716 -9.8484 -5.1245
25 6 0.3719 -2.5793 1.2513
26 9 1.1766 -2.5044 2.3933
27 9 -0.5372 -1.5160 1.2509
28 9 -0.3280 -3.7907 1.2521
29 1 -0.4851 0.8400 -0.0004
30 1 3.0970 -3.4861 0.3576
31 1 3.6922 -5.6873 -1.0790
32 1 3.1211 -6.1750 0.5347
33 1 3.9269 -8.0396 -1.7081
34 1 3.3559 -8.5281 -0.0946
35 1 2.8998 -10.3325 -1.6846
36 1 1.3589 -9.5997 -1.1780
37 1 1.1986 -11.4505 -2.1560
38 1 -0.0410 -13.1524 -3.4312
39 1 -0.6227 -12.7455 -5.7878
40 1 0.0248 -10.6327 -6.8720
41 1 1.2558 -8.9217 -5.6009
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000928816331.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:15:48
Heat of formation + Delta-G solvation = -247.297729 kcal
Electronic energy + Delta-G solvation = -30148.860803 eV
Core-core repulsion = 25193.474708 eV
Total energy + Delta-G solvation = -4955.386095 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.118 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-50.43888 -48.07419 -47.74670 -41.06762 -40.68593 -38.88354 -37.95978 -36.46680
-34.49369 -32.39023 -31.74462 -30.92925 -30.07787 -28.00424 -26.57071 -24.66245
-23.50642 -23.35027 -22.42254 -21.63803 -19.45258 -19.33939 -18.91413 -18.69398
-18.37969 -18.09396 -17.38842 -17.25217 -16.95097 -16.71970 -16.66480 -16.31967
-15.80979 -15.51081 -15.12950 -15.06333 -14.97379 -14.64290 -14.48926 -14.35535
-14.31191 -14.22726 -14.04520 -13.88528 -13.75024 -13.38703 -13.13359 -12.99420
-12.74873 -12.61427 -12.49466 -12.34829 -12.21146 -11.90263 -11.70262 -11.60375
-10.80569 -10.70824 -10.68902 -10.09670 -9.94553 -9.14992 -8.21933 -6.53336
0.40041 0.50956 1.46725 1.47561 1.59335 1.61861 1.85604 2.25667
2.36555 2.50123 2.86003 2.92960 2.98660 3.66195 3.79229 3.84063
3.89039 3.97207 4.06902 4.12445 4.17808 4.24232 4.27472 4.32997
4.35910 4.44514 4.49772 4.54954 4.68913 4.81424 4.89175 5.09420
5.37691 5.37781 5.48704 5.52640 5.60770 5.63781 5.88466 6.07972
6.49402 6.51795 6.72199 7.16257 7.35582 8.71029
Molecular weight = 347.12amu
Principal moments of inertia in cm(-1)
A = 0.018938 B = 0.002087 C = 0.002061
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1478.166214 B =13410.098779 C =13585.291228
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.877 5.877
2 C 0.012 3.988
3 Si 0.986 3.014
4 H -0.271 1.271
5 H -0.286 1.286
6 H -0.255 1.255
7 C -0.560 4.560
8 H 0.097 0.903
9 C 0.252 3.748
10 H 0.042 0.958
11 N -0.702 5.702
12 C 0.495 3.505
13 O -0.572 6.572
14 C 0.057 3.943
15 O -0.398 6.398
16 C 0.056 3.944
17 C 0.056 3.944
18 O -0.333 6.333
19 C 0.107 3.893
20 C -0.220 4.220
21 C -0.085 4.085
22 C -0.166 4.166
23 C -0.085 4.085
24 C -0.180 4.180
25 C 0.414 3.586
26 F -0.200 7.200
27 F -0.151 7.151
28 F -0.221 7.221
29 H 0.268 0.732
30 H 0.418 0.582
31 H 0.114 0.886
32 H 0.116 0.884
33 H 0.076 0.924
34 H 0.109 0.891
35 H 0.111 0.889
36 H 0.065 0.935
37 H 0.143 0.857
38 H 0.150 0.850
39 H 0.148 0.852
40 H 0.149 0.851
41 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.288 -21.154 -3.723 23.401
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.511 5.511
2 C -0.194 4.194
3 Si 0.809 3.191
4 H -0.196 1.196
5 H -0.212 1.212
6 H -0.179 1.179
7 C -0.596 4.596
8 H 0.115 0.885
9 C 0.144 3.856
10 H 0.060 0.940
11 N -0.355 5.355
12 C 0.282 3.718
13 O -0.450 6.450
14 C -0.022 4.022
15 O -0.317 6.317
16 C -0.020 4.020
17 C -0.019 4.019
18 O -0.247 6.247
19 C 0.062 3.938
20 C -0.238 4.238
21 C -0.103 4.103
22 C -0.184 4.184
23 C -0.103 4.103
24 C -0.199 4.199
25 C 0.357 3.643
26 F -0.182 7.182
27 F -0.132 7.132
28 F -0.203 7.203
29 H 0.078 0.922
30 H 0.255 0.745
31 H 0.131 0.869
32 H 0.134 0.866
33 H 0.094 0.906
34 H 0.127 0.873
35 H 0.129 0.871
36 H 0.083 0.917
37 H 0.161 0.839
38 H 0.168 0.832
39 H 0.166 0.834
40 H 0.166 0.834
41 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges 8.188 -20.979 -4.136 22.897
hybrid contribution 0.141 1.035 0.669 1.240
sum 8.329 -19.944 -3.467 21.890
Atomic orbital electron populations
1.70543 1.07625 1.28190 1.44711 1.26059 0.95908 1.03907 0.93478
0.85124 0.78570 0.76892 0.78535 1.19631 1.21161 1.17899 1.21238
0.94671 0.88083 1.55643 0.88524 1.19306 0.89013 0.87615 0.89628
0.93976 1.45800 1.17398 1.09543 1.62800 1.21336 0.88878 0.84561
0.77012 1.90711 1.23872 1.83518 1.46901 1.22250 0.93825 0.84079
1.02054 1.88060 1.40433 1.19853 1.83347 1.22913 0.93099 0.84180
1.01822 1.23117 1.00939 0.98411 0.79422 1.86137 1.70719 1.42331
1.25560 1.19388 0.93362 0.88766 0.92252 1.21531 1.05834 0.94471
1.01996 1.21343 0.95455 0.99060 0.94446 1.21441 1.02944 0.98350
0.95712 1.21291 0.95530 0.92857 1.00636 1.20723 1.04619 1.01904
0.92612 1.23298 0.80857 0.72309 0.87800 1.92986 1.74002 1.96134
1.55102 1.93375 1.69004 1.54543 1.96317 1.93066 1.81647 1.48534
1.97027 0.92187 0.74476 0.86882 0.86613 0.90578 0.87327 0.87078
0.91700 0.83904 0.83208 0.83401 0.83370 0.85942
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -49.16 9.50 21.44 0.20 -48.95 16
2 C 0.01 0.60 5.20 84.65 0.44 1.04 16
3 Si 0.99 40.33 29.54 68.60 2.03 42.36 16
4 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16
5 H -0.29 -11.77 7.11 99.48 0.71 -11.07 16
6 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16
7 C -0.56 -28.05 8.46 25.60 0.22 -27.83 16
8 H 0.10 4.37 7.74 -2.91 -0.02 4.34 16
9 C 0.25 12.73 2.21 44.25 0.10 12.83 16
10 H 0.04 2.50 7.58 -2.39 -0.02 2.49 16
11 N -0.70 -27.84 4.98 -446.09 -2.22 -30.06 16
12 C 0.49 19.70 7.44 87.66 0.65 20.36 16
13 O -0.57 -29.54 15.07 16.02 0.24 -29.30 16
14 C 0.06 1.48 6.42 71.24 0.46 1.93 16
15 O -0.40 -11.99 9.84 -125.56 -1.24 -13.22 16
16 C 0.06 1.01 6.32 71.98 0.45 1.46 16
17 C 0.06 1.06 5.12 71.98 0.37 1.43 16
18 O -0.33 -9.06 10.10 -87.80 -0.89 -9.95 16
19 C 0.11 2.69 6.69 22.50 0.15 2.84 16
20 C -0.22 -4.30 9.04 22.37 0.20 -4.10 16
21 C -0.09 -1.38 10.04 22.25 0.22 -1.15 16
22 C -0.17 -2.64 10.04 22.28 0.22 -2.42 16
23 C -0.09 -1.57 10.04 22.26 0.22 -1.35 16
24 C -0.18 -4.31 9.99 22.37 0.22 -4.08 16
25 C 0.41 21.69 2.81 71.98 0.20 21.89 16
26 F -0.20 -9.72 16.94 44.97 0.76 -8.96 16
27 F -0.15 -8.67 12.91 44.97 0.58 -8.08 16
28 F -0.22 -11.72 15.68 44.97 0.71 -11.01 16
29 H 0.27 14.27 8.31 -92.70 -0.77 13.50 16
30 H 0.42 13.02 8.54 -92.71 -0.79 12.23 16
31 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16
32 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16
33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16
34 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16
35 H 0.11 1.28 7.65 -2.39 -0.02 1.26 16
36 H 0.06 1.31 7.68 -2.39 -0.02 1.29 16
37 H 0.14 2.15 6.30 -2.91 -0.02 2.13 16
38 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16
39 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16
40 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16
41 H 0.12 2.95 8.06 -2.91 -0.02 2.93 16
Total: -1.00 -77.57 364.30 4.60 -72.97
By element:
Atomic # 1 Polarization: 21.08 SS G_CDS: 0.29 Total: 21.37 kcal
Atomic # 6 Polarization: 18.71 SS G_CDS: 4.14 Total: 22.85 kcal
Atomic # 7 Polarization: -77.00 SS G_CDS: -2.02 Total: -79.01 kcal
Atomic # 8 Polarization: -50.59 SS G_CDS: -1.88 Total: -52.47 kcal
Atomic # 9 Polarization: -30.11 SS G_CDS: 2.05 Total: -28.06 kcal
Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal
Total: -77.57 4.60 -72.97 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000928816331.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -174.331 kcal
(2) G-P(sol) polarization free energy of solvation -77.568 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.899 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.967 kcal
(6) G-S(sol) free energy of system = (1) + (5) -247.298 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds