Wall clock time and date at job start Wed Apr 1 2020 04:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99913 * 3 2 1 5 5 H 1.48499 * 109.46907 * 29.99673 * 3 2 1 6 6 H 1.48495 * 109.46933 * 149.99974 * 3 2 1 7 7 C 1.37867 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00380 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00258 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47066 * 60.00261 * 9 7 2 11 11 N 1.46504 * 109.47650 * 180.02562 * 9 7 2 12 12 C 1.34773 * 120.00111 * 205.00149 * 11 9 7 13 13 O 1.21277 * 120.00090 * 0.02562 * 12 11 9 14 14 C 1.50703 * 119.99847 * 179.97438 * 12 11 9 15 15 O 1.42901 * 109.47052 * 180.02562 * 14 12 11 16 16 C 1.42901 * 113.99898 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.46876 * 179.97438 * 16 15 14 18 18 O 1.42904 * 109.46899 * 65.00673 * 17 16 15 19 19 C 1.35901 * 117.00133 * 179.97438 * 18 17 16 20 20 C 1.38733 * 120.05231 * 359.72336 * 19 18 17 21 21 C 1.38146 * 119.94171 * 179.74423 * 20 19 18 22 22 C 1.38266 * 120.05491 * 0.50835 * 21 20 19 23 23 C 1.38267 * 120.11113 * 359.76607 * 22 21 20 24 24 C 1.38148 * 120.05616 * 359.97438 * 23 22 21 25 25 C 1.53006 * 109.47239 * 300.00370 * 9 7 2 26 26 F 1.39900 * 109.46764 * 299.99857 * 25 9 7 27 27 F 1.39895 * 109.46931 * 59.99600 * 25 9 7 28 28 F 1.39897 * 109.47129 * 179.97438 * 25 9 7 29 29 H 0.97006 * 120.00645 * 0.02562 * 1 2 3 30 30 H 0.97003 * 119.99624 * 24.99831 * 11 9 7 31 31 H 1.08999 * 109.46659 * 299.99752 * 14 12 11 32 32 H 1.08988 * 109.47257 * 59.99966 * 14 12 11 33 33 H 1.08990 * 109.47317 * 300.00024 * 16 15 14 34 34 H 1.08994 * 109.46562 * 60.00219 * 16 15 14 35 35 H 1.08999 * 109.47107 * 185.00205 * 17 16 15 36 36 H 1.08997 * 109.47393 * 305.00461 * 17 16 15 37 37 H 1.08004 * 120.02998 * 359.97438 * 20 19 18 38 38 H 1.08000 * 119.97405 * 180.27719 * 21 20 19 39 39 H 1.08000 * 119.94301 * 179.74514 * 22 21 20 40 40 H 1.08000 * 119.97325 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.02452 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6241 -2.5575 -0.8880 11 7 2.2031 -3.6126 0.0027 12 6 1.8370 -4.8127 -0.4895 13 8 0.7196 -4.9706 -0.9337 14 6 2.8166 -5.9579 -0.4890 15 8 2.1982 -7.1139 -1.0578 16 6 3.0466 -8.2628 -1.1055 17 6 2.2846 -9.4339 -1.7290 18 8 1.9800 -9.1321 -3.0922 19 6 1.3005 -10.0755 -3.7960 20 6 0.9395 -11.2694 -3.1887 21 6 0.2442 -12.2246 -3.9048 22 6 -0.0827 -11.9958 -5.2286 23 6 0.2809 -10.8090 -5.8377 24 6 0.9716 -9.8484 -5.1245 25 6 0.3719 -2.5793 1.2513 26 9 1.1766 -2.5044 2.3933 27 9 -0.5372 -1.5160 1.2509 28 9 -0.3280 -3.7907 1.2521 29 1 -0.4851 0.8400 -0.0004 30 1 3.0970 -3.4861 0.3576 31 1 3.6922 -5.6873 -1.0790 32 1 3.1211 -6.1750 0.5347 33 1 3.9269 -8.0396 -1.7081 34 1 3.3559 -8.5281 -0.0946 35 1 2.8998 -10.3325 -1.6846 36 1 1.3589 -9.5997 -1.1780 37 1 1.1986 -11.4505 -2.1560 38 1 -0.0410 -13.1524 -3.4312 39 1 -0.6227 -12.7455 -5.7878 40 1 0.0248 -10.6327 -6.8720 41 1 1.2558 -8.9217 -5.6009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928816331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:48 Heat of formation + Delta-G solvation = -247.297729 kcal Electronic energy + Delta-G solvation = -30148.860803 eV Core-core repulsion = 25193.474708 eV Total energy + Delta-G solvation = -4955.386095 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.43888 -48.07419 -47.74670 -41.06762 -40.68593 -38.88354 -37.95978 -36.46680 -34.49369 -32.39023 -31.74462 -30.92925 -30.07787 -28.00424 -26.57071 -24.66245 -23.50642 -23.35027 -22.42254 -21.63803 -19.45258 -19.33939 -18.91413 -18.69398 -18.37969 -18.09396 -17.38842 -17.25217 -16.95097 -16.71970 -16.66480 -16.31967 -15.80979 -15.51081 -15.12950 -15.06333 -14.97379 -14.64290 -14.48926 -14.35535 -14.31191 -14.22726 -14.04520 -13.88528 -13.75024 -13.38703 -13.13359 -12.99420 -12.74873 -12.61427 -12.49466 -12.34829 -12.21146 -11.90263 -11.70262 -11.60375 -10.80569 -10.70824 -10.68902 -10.09670 -9.94553 -9.14992 -8.21933 -6.53336 0.40041 0.50956 1.46725 1.47561 1.59335 1.61861 1.85604 2.25667 2.36555 2.50123 2.86003 2.92960 2.98660 3.66195 3.79229 3.84063 3.89039 3.97207 4.06902 4.12445 4.17808 4.24232 4.27472 4.32997 4.35910 4.44514 4.49772 4.54954 4.68913 4.81424 4.89175 5.09420 5.37691 5.37781 5.48704 5.52640 5.60770 5.63781 5.88466 6.07972 6.49402 6.51795 6.72199 7.16257 7.35582 8.71029 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.018938 B = 0.002087 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.166214 B =13410.098779 C =13585.291228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.012 3.988 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.255 1.255 7 C -0.560 4.560 8 H 0.097 0.903 9 C 0.252 3.748 10 H 0.042 0.958 11 N -0.702 5.702 12 C 0.495 3.505 13 O -0.572 6.572 14 C 0.057 3.943 15 O -0.398 6.398 16 C 0.056 3.944 17 C 0.056 3.944 18 O -0.333 6.333 19 C 0.107 3.893 20 C -0.220 4.220 21 C -0.085 4.085 22 C -0.166 4.166 23 C -0.085 4.085 24 C -0.180 4.180 25 C 0.414 3.586 26 F -0.200 7.200 27 F -0.151 7.151 28 F -0.221 7.221 29 H 0.268 0.732 30 H 0.418 0.582 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.065 0.935 37 H 0.143 0.857 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.288 -21.154 -3.723 23.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.194 4.194 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.179 1.179 7 C -0.596 4.596 8 H 0.115 0.885 9 C 0.144 3.856 10 H 0.060 0.940 11 N -0.355 5.355 12 C 0.282 3.718 13 O -0.450 6.450 14 C -0.022 4.022 15 O -0.317 6.317 16 C -0.020 4.020 17 C -0.019 4.019 18 O -0.247 6.247 19 C 0.062 3.938 20 C -0.238 4.238 21 C -0.103 4.103 22 C -0.184 4.184 23 C -0.103 4.103 24 C -0.199 4.199 25 C 0.357 3.643 26 F -0.182 7.182 27 F -0.132 7.132 28 F -0.203 7.203 29 H 0.078 0.922 30 H 0.255 0.745 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.083 0.917 37 H 0.161 0.839 38 H 0.168 0.832 39 H 0.166 0.834 40 H 0.166 0.834 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.188 -20.979 -4.136 22.897 hybrid contribution 0.141 1.035 0.669 1.240 sum 8.329 -19.944 -3.467 21.890 Atomic orbital electron populations 1.70543 1.07625 1.28190 1.44711 1.26059 0.95908 1.03907 0.93478 0.85124 0.78570 0.76892 0.78535 1.19631 1.21161 1.17899 1.21238 0.94671 0.88083 1.55643 0.88524 1.19306 0.89013 0.87615 0.89628 0.93976 1.45800 1.17398 1.09543 1.62800 1.21336 0.88878 0.84561 0.77012 1.90711 1.23872 1.83518 1.46901 1.22250 0.93825 0.84079 1.02054 1.88060 1.40433 1.19853 1.83347 1.22913 0.93099 0.84180 1.01822 1.23117 1.00939 0.98411 0.79422 1.86137 1.70719 1.42331 1.25560 1.19388 0.93362 0.88766 0.92252 1.21531 1.05834 0.94471 1.01996 1.21343 0.95455 0.99060 0.94446 1.21441 1.02944 0.98350 0.95712 1.21291 0.95530 0.92857 1.00636 1.20723 1.04619 1.01904 0.92612 1.23298 0.80857 0.72309 0.87800 1.92986 1.74002 1.96134 1.55102 1.93375 1.69004 1.54543 1.96317 1.93066 1.81647 1.48534 1.97027 0.92187 0.74476 0.86882 0.86613 0.90578 0.87327 0.87078 0.91700 0.83904 0.83208 0.83401 0.83370 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.16 9.50 21.44 0.20 -48.95 16 2 C 0.01 0.60 5.20 84.65 0.44 1.04 16 3 Si 0.99 40.33 29.54 68.60 2.03 42.36 16 4 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.29 -11.77 7.11 99.48 0.71 -11.07 16 6 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 7 C -0.56 -28.05 8.46 25.60 0.22 -27.83 16 8 H 0.10 4.37 7.74 -2.91 -0.02 4.34 16 9 C 0.25 12.73 2.21 44.25 0.10 12.83 16 10 H 0.04 2.50 7.58 -2.39 -0.02 2.49 16 11 N -0.70 -27.84 4.98 -446.09 -2.22 -30.06 16 12 C 0.49 19.70 7.44 87.66 0.65 20.36 16 13 O -0.57 -29.54 15.07 16.02 0.24 -29.30 16 14 C 0.06 1.48 6.42 71.24 0.46 1.93 16 15 O -0.40 -11.99 9.84 -125.56 -1.24 -13.22 16 16 C 0.06 1.01 6.32 71.98 0.45 1.46 16 17 C 0.06 1.06 5.12 71.98 0.37 1.43 16 18 O -0.33 -9.06 10.10 -87.80 -0.89 -9.95 16 19 C 0.11 2.69 6.69 22.50 0.15 2.84 16 20 C -0.22 -4.30 9.04 22.37 0.20 -4.10 16 21 C -0.09 -1.38 10.04 22.25 0.22 -1.15 16 22 C -0.17 -2.64 10.04 22.28 0.22 -2.42 16 23 C -0.09 -1.57 10.04 22.26 0.22 -1.35 16 24 C -0.18 -4.31 9.99 22.37 0.22 -4.08 16 25 C 0.41 21.69 2.81 71.98 0.20 21.89 16 26 F -0.20 -9.72 16.94 44.97 0.76 -8.96 16 27 F -0.15 -8.67 12.91 44.97 0.58 -8.08 16 28 F -0.22 -11.72 15.68 44.97 0.71 -11.01 16 29 H 0.27 14.27 8.31 -92.70 -0.77 13.50 16 30 H 0.42 13.02 8.54 -92.71 -0.79 12.23 16 31 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.11 1.28 7.65 -2.39 -0.02 1.26 16 36 H 0.06 1.31 7.68 -2.39 -0.02 1.29 16 37 H 0.14 2.15 6.30 -2.91 -0.02 2.13 16 38 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 39 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 40 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 41 H 0.12 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -77.57 364.30 4.60 -72.97 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.29 Total: 21.37 kcal Atomic # 6 Polarization: 18.71 SS G_CDS: 4.14 Total: 22.85 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -2.02 Total: -79.01 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -1.88 Total: -52.47 kcal Atomic # 9 Polarization: -30.11 SS G_CDS: 2.05 Total: -28.06 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -77.57 4.60 -72.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928816331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.331 kcal (2) G-P(sol) polarization free energy of solvation -77.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds