Wall clock time and date at job start Wed Apr 1 2020 04:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48499 * 109.47273 * 274.13500 * 3 2 1 5 5 H 1.48499 * 109.47281 * 34.14177 * 3 2 1 6 6 H 1.48505 * 109.46819 * 154.13901 * 3 2 1 7 7 C 1.38813 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99553 * 170.42365 * 7 2 1 9 9 N 1.36934 * 120.00225 * 350.42105 * 7 2 1 10 10 C 1.47024 * 125.65241 * 169.94415 * 9 7 2 11 11 C 1.54323 * 107.27426 * 178.98796 * 10 9 7 12 12 H 1.08994 * 110.71648 * 96.16753 * 11 10 9 13 13 C 1.52996 * 110.71814 * 219.44115 * 11 10 9 14 14 N 1.46491 * 109.47603 * 288.52260 * 13 11 10 15 15 C 1.34775 * 120.00172 * 180.02562 * 14 13 11 16 16 O 1.21619 * 120.00398 * 359.97438 * 15 14 13 17 17 C 1.47206 * 119.99751 * 179.97438 * 15 14 13 18 18 C 1.33793 * 124.64610 * 179.72278 * 17 15 14 19 19 C 1.40099 * 115.49766 * 179.85644 * 18 17 15 20 20 C 1.41720 * 129.99288 * 180.13959 * 19 18 17 21 21 C 1.36028 * 119.33714 * 180.29092 * 20 19 18 22 22 N 1.32304 * 121.58432 * 359.97438 * 21 20 19 23 23 C 1.31359 * 122.05380 * 359.96423 * 22 21 20 24 24 C 1.39723 * 120.59852 * 0.07941 * 23 22 21 25 25 S 1.75523 * 124.64914 * 0.02562 * 17 15 14 26 26 C 1.55160 * 102.94087 * 337.80606 * 11 10 9 27 27 H 1.09000 * 111.00609 * 277.39270 * 26 11 10 28 28 O 1.42894 * 111.00227 * 153.57846 * 26 11 10 29 29 C 1.47427 * 125.64582 * 349.99849 * 9 7 2 30 30 H 0.97007 * 119.99553 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.88117 * 59.56408 * 10 9 7 32 32 H 1.08997 * 109.87922 * 298.40576 * 10 9 7 33 33 H 1.09002 * 109.46901 * 48.52758 * 13 11 10 34 34 H 1.09004 * 109.47069 * 168.51493 * 13 11 10 35 35 H 0.97001 * 119.99748 * 359.97438 * 14 13 11 36 36 H 1.08002 * 122.25190 * 0.03396 * 18 17 15 37 37 H 1.08008 * 120.32495 * 0.26964 * 20 19 18 38 38 H 1.08007 * 119.20770 * 179.97438 * 21 20 19 39 39 H 1.07993 * 119.69643 * 180.02562 * 23 22 21 40 40 H 0.96701 * 113.99984 * 180.02562 * 28 26 11 41 41 H 1.08993 * 110.36934 * 85.24599 * 29 9 7 42 42 H 1.08996 * 110.36696 * 322.91899 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4103 2.0969 -1.3964 5 1 1.4942 2.6258 0.7858 6 1 3.5888 1.4164 0.6107 7 6 2.0102 -1.2022 0.0005 8 1 3.0789 -1.2088 -0.1551 9 7 1.3399 -2.3797 0.1984 10 6 1.9019 -3.7264 0.0189 11 6 0.7930 -4.7375 0.3789 12 1 0.2725 -5.0744 -0.5176 13 6 1.3729 -5.9256 1.1488 14 7 2.1660 -6.7565 0.2396 15 6 2.7763 -7.8663 0.7004 16 8 2.6690 -8.1778 1.8711 17 6 3.5727 -8.7015 -0.2135 18 6 4.2203 -9.8162 0.1445 19 6 4.9183 -10.4645 -0.8828 20 6 5.6942 -11.6500 -0.8498 21 6 6.2905 -12.0882 -1.9911 22 7 6.1638 -11.4344 -3.1343 23 6 5.4580 -10.3308 -3.2317 24 6 4.8084 -9.8011 -2.1138 25 16 3.8093 -8.3674 -1.9203 26 6 -0.1545 -3.9065 1.2840 27 1 0.2102 -3.8796 2.3109 28 8 -1.4893 -4.4137 1.2305 29 6 -0.0654 -2.5070 0.6256 30 1 -0.4850 0.8401 -0.0004 31 1 2.7569 -3.8625 0.6811 32 1 2.2077 -3.8652 -1.0180 33 1 2.0088 -5.5604 1.9553 34 1 0.5600 -6.5190 1.5675 35 1 2.2513 -6.5083 -0.6942 36 1 4.2036 -10.1927 1.1566 37 1 5.8110 -12.1997 0.0726 38 1 6.8817 -12.9917 -1.9634 39 1 5.3798 -9.8281 -4.1842 40 1 -2.1177 -3.9259 1.7802 41 1 -0.7305 -2.4503 -0.2360 42 1 -0.3137 -1.7308 1.3494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958130485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:16 Heat of formation + Delta-G solvation = 0.794901 kcal Electronic energy + Delta-G solvation = -26662.447535 eV Core-core repulsion = 22734.721906 eV Total energy + Delta-G solvation = -3927.725629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.88086 -39.91039 -38.33112 -36.47687 -35.27876 -34.77699 -32.39680 -31.90604 -31.04085 -29.73653 -27.69746 -26.17017 -25.10775 -24.43568 -23.41187 -21.88340 -20.83991 -20.36942 -19.88358 -18.86027 -17.33523 -17.14340 -16.91147 -16.65350 -16.44597 -15.70434 -15.55855 -15.05892 -14.92691 -14.77318 -14.37909 -14.27760 -14.08757 -13.85304 -13.38283 -13.15538 -12.98508 -12.50542 -12.40549 -12.24903 -12.01478 -11.72968 -11.36263 -11.23717 -11.06716 -10.85575 -10.70428 -10.43858 -10.42183 -10.14021 -10.11817 -9.92689 -9.84317 -9.55235 -9.28554 -9.15094 -8.69185 -8.34055 -6.93140 -5.84785 -3.18925 -0.25026 0.53654 0.85659 1.32037 1.55431 2.84498 2.87535 3.29701 3.33788 3.39975 3.41845 3.96806 4.10730 4.23809 4.37408 4.42005 4.55092 4.62266 4.89016 4.94004 5.05729 5.10859 5.15165 5.30638 5.37322 5.39758 5.57230 5.60275 5.71036 5.80864 5.90668 5.94602 6.07385 6.09316 6.18648 6.32618 6.50427 6.72561 7.23465 7.25781 7.43371 7.43832 7.65501 7.89630 8.06419 8.15872 9.07482 9.69355 10.34739 11.27950 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.002237 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.183989 B =12515.448160 C =13611.232691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.233 4.233 8 H 0.078 0.922 9 N -0.599 5.599 10 C 0.140 3.860 11 C -0.105 4.105 12 H 0.089 0.911 13 C 0.133 3.867 14 N -0.714 5.714 15 C 0.584 3.416 16 O -0.523 6.523 17 C -0.200 4.200 18 C -0.057 4.057 19 C -0.044 4.044 20 C -0.120 4.120 21 C 0.077 3.923 22 N -0.467 5.467 23 C 0.161 3.839 24 C -0.200 4.200 25 S 0.167 5.833 26 C 0.081 3.919 27 H 0.062 0.938 28 O -0.568 6.568 29 C 0.149 3.851 30 H 0.254 0.746 31 H 0.029 0.971 32 H 0.026 0.974 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.401 0.599 36 H 0.161 0.839 37 H 0.143 0.857 38 H 0.161 0.839 39 H 0.165 0.835 40 H 0.378 0.622 41 H 0.037 0.963 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.244 -21.838 -2.270 23.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.361 4.361 8 H 0.096 0.904 9 N -0.327 5.327 10 C 0.014 3.986 11 C -0.125 4.125 12 H 0.107 0.893 13 C 0.010 3.990 14 N -0.364 5.364 15 C 0.368 3.632 16 O -0.401 6.401 17 C -0.320 4.320 18 C -0.089 4.089 19 C -0.060 4.060 20 C -0.141 4.141 21 C -0.072 4.072 22 N -0.176 5.176 23 C -0.010 4.010 24 C -0.318 4.318 25 S 0.432 5.568 26 C 0.020 3.980 27 H 0.079 0.921 28 O -0.372 6.372 29 C 0.024 3.976 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.235 0.765 36 H 0.178 0.822 37 H 0.161 0.839 38 H 0.178 0.822 39 H 0.183 0.817 40 H 0.224 0.776 41 H 0.055 0.945 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.295 -21.442 -3.473 22.913 hybrid contribution 0.284 0.698 1.503 1.682 sum 7.579 -20.744 -1.970 22.173 Atomic orbital electron populations 1.69947 1.05017 1.25380 1.56095 1.24850 0.95667 0.97966 1.01795 0.86105 0.78771 0.83285 0.77603 1.21497 1.21539 1.20518 1.19021 0.91191 0.82557 1.43295 0.90410 1.44292 1.09188 0.99835 1.79356 1.21403 0.93740 0.85566 0.97925 1.22408 0.96841 0.94004 0.99218 0.89315 1.21548 0.94490 0.90871 0.92088 1.45939 1.51425 1.25136 1.13930 1.17033 0.79039 0.80484 0.86656 1.90833 1.61723 1.71252 1.16286 1.24071 1.07260 1.02087 0.98621 1.20157 0.94751 0.93321 1.00719 1.18358 0.99083 0.96552 0.92009 1.21807 0.96724 0.94875 1.00734 1.22182 0.97925 0.99417 0.87661 1.67725 1.15360 1.06898 1.27656 1.22383 0.90827 0.91435 0.96346 1.24153 1.06438 1.01881 0.99356 1.84304 1.47978 1.22386 1.02097 1.23270 0.81438 0.95654 0.97621 0.92054 1.86380 1.19401 1.59168 1.72286 1.22017 0.86600 0.91177 0.97826 0.93574 0.95268 0.95621 0.90682 0.90613 0.76468 0.82188 0.83906 0.82152 0.81745 0.77558 0.94471 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.15 10.68 55.49 0.59 -25.56 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 21.50 29.56 -169.99 -5.03 16.48 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.23 -6.28 10.24 -15.06 -0.15 -6.44 16 8 H 0.08 2.04 7.85 -52.49 -0.41 1.62 16 9 N -0.60 -14.69 3.39 -170.07 -0.58 -15.26 16 10 C 0.14 2.72 6.75 -3.06 -0.02 2.70 16 11 C -0.11 -1.74 2.70 -88.79 -0.24 -1.98 16 12 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 13 C 0.13 1.93 5.02 -4.05 -0.02 1.90 16 14 N -0.71 -9.23 5.46 -61.46 -0.34 -9.56 16 15 C 0.58 7.94 7.80 -12.62 -0.10 7.84 16 16 O -0.52 -8.66 16.73 5.26 0.09 -8.57 16 17 C -0.20 -2.24 6.33 -37.50 -0.24 -2.47 16 18 C -0.06 -0.58 9.81 -40.44 -0.40 -0.98 16 19 C -0.04 -0.41 5.91 -107.11 -0.63 -1.05 16 20 C -0.12 -0.88 10.13 -39.05 -0.40 -1.27 16 21 C 0.08 0.57 11.06 -18.14 -0.20 0.37 16 22 N -0.47 -4.32 10.34 -13.41 -0.14 -4.46 16 23 C 0.16 1.38 11.24 -17.20 -0.19 1.19 16 24 C -0.20 -1.86 6.54 -38.27 -0.25 -2.11 16 25 S 0.17 1.53 22.26 -107.50 -2.39 -0.86 16 26 C 0.08 1.44 3.88 -24.58 -0.10 1.35 16 27 H 0.06 1.06 8.05 -51.93 -0.42 0.64 16 28 O -0.57 -9.27 13.47 -35.23 -0.47 -9.75 16 29 C 0.15 3.44 5.16 -2.52 -0.01 3.42 16 30 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.03 0.56 7.68 -51.93 -0.40 0.16 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.40 4.55 7.52 -40.82 -0.31 4.24 16 36 H 0.16 1.49 7.96 -52.49 -0.42 1.07 16 37 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 38 H 0.16 0.72 8.06 -52.48 -0.42 0.30 16 39 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.38 4.72 9.12 45.56 0.42 5.13 16 41 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 42 H 0.07 1.82 6.93 -51.93 -0.36 1.46 16 LS Contribution 369.20 15.07 5.56 5.56 Total: -1.00 -33.33 369.20 -10.14 -43.47 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -4.40 Total: 6.30 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -3.04 Total: 2.22 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.46 Total: -54.84 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.39 Total: -18.32 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.48 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.39 Total: -0.86 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.33 -10.14 -43.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958130485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.266 kcal (2) G-P(sol) polarization free energy of solvation -33.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds