Wall clock time and date at job start Wed Apr 1 2020 04:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48499 * 109.47273 * 274.13500 * 3 2 1 5 5 H 1.48499 * 109.47281 * 34.14177 * 3 2 1 6 6 H 1.48505 * 109.46819 * 154.13901 * 3 2 1 7 7 C 1.38813 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99553 * 170.42365 * 7 2 1 9 9 N 1.36934 * 120.00225 * 350.42105 * 7 2 1 10 10 C 1.47024 * 125.65241 * 169.94415 * 9 7 2 11 11 C 1.54323 * 107.27426 * 178.98796 * 10 9 7 12 12 H 1.08994 * 110.71648 * 96.16753 * 11 10 9 13 13 C 1.52996 * 110.71814 * 219.44115 * 11 10 9 14 14 N 1.46491 * 109.47603 * 288.52260 * 13 11 10 15 15 C 1.34775 * 120.00172 * 180.02562 * 14 13 11 16 16 O 1.21619 * 120.00398 * 359.97438 * 15 14 13 17 17 C 1.47206 * 119.99751 * 179.97438 * 15 14 13 18 18 C 1.33793 * 124.64610 * 179.72278 * 17 15 14 19 19 C 1.40099 * 115.49766 * 179.85644 * 18 17 15 20 20 C 1.41720 * 129.99288 * 180.13959 * 19 18 17 21 21 C 1.36028 * 119.33714 * 180.29092 * 20 19 18 22 22 N 1.32304 * 121.58432 * 359.97438 * 21 20 19 23 23 C 1.31359 * 122.05380 * 359.96423 * 22 21 20 24 24 C 1.39723 * 120.59852 * 0.07941 * 23 22 21 25 25 S 1.75523 * 124.64914 * 0.02562 * 17 15 14 26 26 C 1.55160 * 102.94087 * 337.80606 * 11 10 9 27 27 H 1.09000 * 111.00609 * 277.39270 * 26 11 10 28 28 O 1.42894 * 111.00227 * 153.57846 * 26 11 10 29 29 C 1.47427 * 125.64582 * 349.99849 * 9 7 2 30 30 H 0.97007 * 119.99553 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.88117 * 59.56408 * 10 9 7 32 32 H 1.08997 * 109.87922 * 298.40576 * 10 9 7 33 33 H 1.09002 * 109.46901 * 48.52758 * 13 11 10 34 34 H 1.09004 * 109.47069 * 168.51493 * 13 11 10 35 35 H 0.97001 * 119.99748 * 359.97438 * 14 13 11 36 36 H 1.08002 * 122.25190 * 0.03396 * 18 17 15 37 37 H 1.08008 * 120.32495 * 0.26964 * 20 19 18 38 38 H 1.08007 * 119.20770 * 179.97438 * 21 20 19 39 39 H 1.07993 * 119.69643 * 180.02562 * 23 22 21 40 40 H 0.96701 * 113.99984 * 180.02562 * 28 26 11 41 41 H 1.08993 * 110.36934 * 85.24599 * 29 9 7 42 42 H 1.08996 * 110.36696 * 322.91899 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4103 2.0969 -1.3964 5 1 1.4942 2.6258 0.7858 6 1 3.5888 1.4164 0.6107 7 6 2.0102 -1.2022 0.0005 8 1 3.0789 -1.2088 -0.1551 9 7 1.3399 -2.3797 0.1984 10 6 1.9019 -3.7264 0.0189 11 6 0.7930 -4.7375 0.3789 12 1 0.2725 -5.0744 -0.5176 13 6 1.3729 -5.9256 1.1488 14 7 2.1660 -6.7565 0.2396 15 6 2.7763 -7.8663 0.7004 16 8 2.6690 -8.1778 1.8711 17 6 3.5727 -8.7015 -0.2135 18 6 4.2203 -9.8162 0.1445 19 6 4.9183 -10.4645 -0.8828 20 6 5.6942 -11.6500 -0.8498 21 6 6.2905 -12.0882 -1.9911 22 7 6.1638 -11.4344 -3.1343 23 6 5.4580 -10.3308 -3.2317 24 6 4.8084 -9.8011 -2.1138 25 16 3.8093 -8.3674 -1.9203 26 6 -0.1545 -3.9065 1.2840 27 1 0.2102 -3.8796 2.3109 28 8 -1.4893 -4.4137 1.2305 29 6 -0.0654 -2.5070 0.6256 30 1 -0.4850 0.8401 -0.0004 31 1 2.7569 -3.8625 0.6811 32 1 2.2077 -3.8652 -1.0180 33 1 2.0088 -5.5604 1.9553 34 1 0.5600 -6.5190 1.5675 35 1 2.2513 -6.5083 -0.6942 36 1 4.2036 -10.1927 1.1566 37 1 5.8110 -12.1997 0.0726 38 1 6.8817 -12.9917 -1.9634 39 1 5.3798 -9.8281 -4.1842 40 1 -2.1177 -3.9259 1.7802 41 1 -0.7305 -2.4503 -0.2360 42 1 -0.3137 -1.7308 1.3494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958130485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:14 Heat of formation + Delta-G solvation = -23.778656 kcal Electronic energy + Delta-G solvation = -26663.513124 eV Core-core repulsion = 22734.721906 eV Total energy + Delta-G solvation = -3928.791218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.56809 -40.97252 -39.81130 -37.23736 -36.66877 -36.19913 -34.11923 -32.50575 -32.08130 -31.12468 -29.34828 -27.56112 -26.34090 -25.25107 -24.63191 -22.85088 -22.22722 -21.68750 -21.10900 -19.77502 -18.88346 -18.44492 -17.91424 -17.60214 -17.32016 -17.01473 -16.64643 -16.49612 -15.80435 -15.78715 -15.57307 -15.39769 -15.09315 -14.89850 -14.75045 -14.46990 -14.16364 -14.02002 -13.67244 -13.40899 -13.13594 -13.07283 -12.90794 -12.79379 -12.43470 -12.35084 -12.04848 -11.95027 -11.87218 -11.60828 -11.30834 -11.03833 -10.84054 -10.76440 -10.71086 -10.44508 -10.13794 -8.99379 -8.91250 -7.91242 -5.27140 -0.99734 -0.05936 0.13727 0.59797 0.79331 1.46486 1.47356 1.57061 1.82068 1.90216 2.46593 2.68080 3.14522 3.27323 3.33538 3.46000 3.56737 3.58436 3.68109 3.79606 3.81580 3.87441 4.07114 4.30856 4.38569 4.41968 4.46255 4.54420 4.58059 4.65052 4.71199 4.84791 4.91794 4.92862 5.05974 5.11300 5.26794 5.37020 5.47399 5.52468 5.65168 6.14741 6.21284 6.83940 6.86117 6.87434 7.04058 7.70731 8.35696 9.20209 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.002237 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.183989 B =12515.448160 C =13611.232691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.062 4.062 3 Si 0.977 3.023 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.245 4.245 8 H 0.082 0.918 9 N -0.622 5.622 10 C 0.138 3.862 11 C -0.089 4.089 12 H 0.093 0.907 13 C 0.146 3.854 14 N -0.709 5.709 15 C 0.587 3.413 16 O -0.558 6.558 17 C -0.226 4.226 18 C -0.046 4.046 19 C -0.062 4.062 20 C -0.113 4.113 21 C 0.072 3.928 22 N -0.484 5.484 23 C 0.152 3.848 24 C -0.208 4.208 25 S 0.185 5.815 26 C 0.098 3.902 27 H 0.074 0.926 28 O -0.568 6.568 29 C 0.156 3.844 30 H 0.249 0.751 31 H 0.037 0.963 32 H 0.033 0.967 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.409 0.591 36 H 0.165 0.835 37 H 0.171 0.829 38 H 0.190 0.810 39 H 0.184 0.816 40 H 0.395 0.605 41 H 0.003 0.997 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.686 -23.689 -2.468 25.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.256 4.256 3 Si 0.805 3.195 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.193 1.193 7 C -0.373 4.373 8 H 0.100 0.900 9 N -0.349 5.349 10 C 0.013 3.987 11 C -0.108 4.108 12 H 0.111 0.889 13 C 0.022 3.978 14 N -0.360 5.360 15 C 0.373 3.627 16 O -0.438 6.438 17 C -0.346 4.346 18 C -0.080 4.080 19 C -0.078 4.078 20 C -0.135 4.135 21 C -0.077 4.077 22 N -0.193 5.193 23 C -0.018 4.018 24 C -0.326 4.326 25 S 0.451 5.549 26 C 0.037 3.963 27 H 0.092 0.908 28 O -0.375 6.375 29 C 0.031 3.969 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.245 0.755 36 H 0.183 0.817 37 H 0.189 0.811 38 H 0.207 0.793 39 H 0.201 0.799 40 H 0.245 0.755 41 H 0.021 0.979 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.742 -23.308 -3.693 25.166 hybrid contribution -0.116 1.162 1.516 1.914 sum 8.625 -22.145 -2.177 23.865 Atomic orbital electron populations 1.70140 1.06356 1.25610 1.57431 1.25662 0.96513 1.01143 1.02252 0.85096 0.77867 0.79163 0.77367 1.21329 1.21951 1.19341 1.19397 0.91711 0.83854 1.42377 0.90002 1.44579 1.09764 1.01092 1.79497 1.21553 0.94756 0.83987 0.98444 1.22236 0.95532 0.93769 0.99303 0.88901 1.21291 0.94616 0.90120 0.91742 1.45830 1.51110 1.24911 1.14146 1.17268 0.78625 0.80331 0.86500 1.90808 1.63081 1.72118 1.17816 1.23859 1.08483 1.02688 0.99561 1.20304 0.93739 0.92723 1.01184 1.18540 0.99905 0.97593 0.91749 1.22145 0.95364 0.94009 1.01956 1.22714 0.97783 1.00064 0.87102 1.67776 1.15605 1.07226 1.28724 1.22718 0.90620 0.91512 0.96951 1.24312 1.06571 1.01939 0.99811 1.84146 1.47979 1.22420 1.00404 1.22955 0.82712 0.92709 0.97918 0.90774 1.86355 1.19014 1.59109 1.72993 1.21808 0.85571 0.93553 0.96015 0.94175 0.94543 0.94931 0.91092 0.90286 0.75502 0.81720 0.81113 0.79272 0.79904 0.75534 0.97895 0.94077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.51 10.68 21.65 0.23 -55.28 16 2 C -0.06 -3.45 5.40 84.86 0.46 -2.99 16 3 Si 0.98 44.63 29.56 68.60 2.03 46.66 16 4 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.24 -13.32 10.24 84.03 0.86 -12.46 16 8 H 0.08 4.27 7.85 -2.91 -0.02 4.25 16 9 N -0.62 -30.76 3.39 -691.99 -2.35 -33.11 16 10 C 0.14 5.25 6.75 86.73 0.59 5.84 16 11 C -0.09 -2.84 2.70 -9.61 -0.03 -2.87 16 12 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 13 C 0.15 4.01 5.02 86.38 0.43 4.45 16 14 N -0.71 -17.48 5.46 -466.61 -2.55 -20.03 16 15 C 0.59 15.47 7.80 86.60 0.68 16.14 16 16 O -0.56 -18.17 16.73 -4.09 -0.07 -18.23 16 17 C -0.23 -4.83 6.33 23.62 0.15 -4.68 16 18 C -0.05 -0.88 9.81 21.71 0.21 -0.67 16 19 C -0.06 -1.06 5.91 -21.47 -0.13 -1.19 16 20 C -0.11 -1.36 10.13 22.62 0.23 -1.13 16 21 C 0.07 0.88 11.06 84.11 0.93 1.81 16 22 N -0.48 -7.96 10.34 -196.35 -2.03 -9.99 16 23 C 0.15 2.36 11.24 85.12 0.96 3.31 16 24 C -0.21 -3.56 6.54 23.12 0.15 -3.41 16 25 S 0.18 3.17 22.26 -56.49 -1.26 1.92 16 26 C 0.10 3.44 3.88 31.99 0.12 3.56 16 27 H 0.07 2.46 8.05 -2.39 -0.02 2.44 16 28 O -0.57 -17.83 13.47 -148.98 -2.01 -19.83 16 29 C 0.16 7.37 5.16 86.86 0.45 7.81 16 30 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 31 H 0.04 1.36 7.68 -2.39 -0.02 1.34 16 32 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 2.05 7.93 -2.39 -0.02 2.03 16 34 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 35 H 0.41 8.73 7.52 -92.71 -0.70 8.03 16 36 H 0.17 2.87 7.96 -2.91 -0.02 2.85 16 37 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 38 H 0.19 1.06 8.06 -2.91 -0.02 1.03 16 39 H 0.18 1.91 8.06 -2.91 -0.02 1.88 16 40 H 0.39 9.39 9.12 -74.06 -0.68 8.72 16 41 H 0.00 0.16 8.07 -2.39 -0.02 0.14 16 42 H 0.04 2.16 6.93 -2.39 -0.02 2.14 16 Total: -1.00 -72.54 369.20 -2.23 -74.77 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -0.29 Total: 19.61 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 6.06 Total: 13.53 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -6.70 Total: -118.41 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -2.08 Total: -38.07 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.26 Total: 1.92 kcal Total: -72.54 -2.23 -74.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958130485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.987 kcal (2) G-P(sol) polarization free energy of solvation -72.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds