Wall clock time and date at job start Wed Apr 1 2020 04:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99677 * 2 1 4 4 H 1.48505 * 109.47123 * 240.00015 * 3 2 1 5 5 H 1.48501 * 109.47288 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47274 * 119.99838 * 3 2 1 7 7 C 1.38812 * 120.00596 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00122 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99577 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.64924 * 359.96012 * 9 7 2 11 11 C 1.54327 * 107.27166 * 181.09262 * 10 9 7 12 12 H 1.08993 * 110.71972 * 140.55063 * 11 10 9 13 13 O 1.42894 * 110.71896 * 263.83091 * 11 10 9 14 14 C 1.55165 * 102.94185 * 22.19050 * 11 10 9 15 15 H 1.08997 * 111.03383 * 82.58685 * 14 11 10 16 16 C 1.52989 * 111.00304 * 206.42252 * 14 11 10 17 17 N 1.46506 * 109.47205 * 178.64793 * 16 14 11 18 18 C 1.34777 * 120.00268 * 180.02562 * 17 16 14 19 19 O 1.21552 * 119.99899 * 0.27240 * 18 17 16 20 20 C 1.47876 * 119.99826 * 180.02562 * 18 17 16 21 21 N 1.32458 * 119.75063 * 359.72242 * 20 18 17 22 22 C 1.31762 * 121.97872 * 179.71071 * 21 20 18 23 23 C 1.37681 * 121.49237 * 0.59364 * 22 21 20 24 24 C 1.41104 * 119.38976 * 359.69832 * 23 22 21 25 25 C 1.44984 * 130.46769 * 180.02562 * 24 23 22 26 26 C 1.32007 * 114.84663 * 179.97438 * 25 24 23 27 27 S 1.75341 * 111.45783 * 0.02562 * 26 25 24 28 28 C 1.40262 * 117.63724 * 0.02562 * 24 23 22 29 29 C 1.47431 * 125.64757 * 179.97438 * 9 7 2 30 30 H 0.96999 * 120.00275 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.88057 * 300.50439 * 10 9 7 32 32 H 1.08992 * 109.88496 * 61.52150 * 10 9 7 33 33 H 0.96705 * 114.00098 * 293.51501 * 13 11 10 34 34 H 1.09001 * 109.47294 * 58.65547 * 16 14 11 35 35 H 1.08992 * 109.47573 * 298.65179 * 16 14 11 36 36 H 0.96999 * 119.99689 * 0.02562 * 17 16 14 37 37 H 1.08001 * 119.25690 * 180.29597 * 22 21 20 38 38 H 1.08003 * 120.30059 * 179.68217 * 23 22 21 39 39 H 1.07996 * 122.57698 * 359.97438 * 25 24 23 40 40 H 1.08005 * 124.26645 * 179.97438 * 26 25 24 41 41 H 1.08995 * 110.36366 * 36.99486 * 29 9 7 42 42 H 1.09008 * 110.36289 * 274.67541 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1374 -2.5328 0.0008 11 6 -0.4482 -4.0442 0.0288 12 1 -1.2980 -4.2511 0.6792 13 8 -0.6885 -4.5354 -1.2913 14 6 0.8523 -4.6557 0.6138 15 1 0.8579 -4.5955 1.7021 16 6 1.0373 -6.1007 0.1464 17 7 2.2887 -6.6336 0.6908 18 6 2.6618 -7.8978 0.4093 19 8 1.9625 -8.5941 -0.3004 20 6 3.9246 -8.4358 0.9593 21 7 4.6880 -7.6692 1.7235 22 6 5.8186 -8.1053 2.2410 23 6 6.2730 -9.3830 2.0029 24 6 5.5098 -10.2495 1.1919 25 6 5.7544 -11.6207 0.7896 26 6 4.8237 -12.1459 0.0147 27 16 3.5356 -11.0006 -0.3070 28 6 4.3089 -9.7552 0.6619 29 6 1.9337 -3.7311 0.0005 30 1 -0.4850 0.8400 0.0004 31 1 -0.5573 -2.0516 0.8842 32 1 -0.5546 -2.0828 -0.8999 33 1 -1.4902 -4.1835 -1.7021 34 1 1.0740 -6.1284 -0.9426 35 1 0.2015 -6.7059 0.4973 36 1 2.8487 -6.0767 1.2539 37 1 6.4045 -7.4440 2.8621 38 1 7.2052 -9.7187 2.4327 39 1 6.6308 -12.1703 1.1000 40 1 4.8525 -13.1536 -0.3729 41 1 2.8336 -3.7401 0.6154 42 1 2.1660 -4.0423 -1.0180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958151462.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:28 Heat of formation + Delta-G solvation = -19.298256 kcal Electronic energy + Delta-G solvation = -27225.623594 eV Core-core repulsion = 23297.026661 eV Total energy + Delta-G solvation = -3928.596933 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.75105 -40.49166 -39.68548 -37.04184 -36.42427 -36.13666 -33.97665 -32.75458 -31.39519 -31.25393 -29.46617 -27.44373 -26.11747 -25.35180 -24.60501 -22.61084 -22.16293 -21.48299 -21.12348 -19.44702 -19.12942 -18.52798 -18.07411 -17.59368 -16.82979 -16.75517 -16.65066 -16.07922 -15.81834 -15.74393 -15.45353 -15.33623 -15.05736 -15.04644 -14.66365 -14.38049 -14.22737 -13.60675 -13.57134 -13.18590 -13.13907 -13.08622 -12.89014 -12.64836 -12.39331 -12.12837 -11.98782 -11.90482 -11.78724 -11.56664 -11.21548 -10.93345 -10.82411 -10.77334 -10.71920 -10.20864 -10.17610 -8.91833 -8.89211 -7.86210 -5.21569 -0.70390 -0.30081 0.41936 1.05420 1.10633 1.45624 1.48953 1.55053 1.72691 1.96367 2.48680 2.70674 3.04667 3.27168 3.35512 3.47199 3.54201 3.62209 3.74306 3.89191 3.92405 3.99255 4.19150 4.31537 4.40896 4.44828 4.55529 4.58109 4.61328 4.81092 4.81512 4.87460 4.97657 5.03830 5.25193 5.26047 5.35194 5.40951 5.46398 5.52265 5.69403 6.17149 6.30095 6.68197 6.93156 7.01757 7.08878 7.74998 8.39723 9.23867 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.017994 B = 0.002392 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.681910 B =11702.109669 C =12936.244207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.980 3.020 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.244 4.244 8 H 0.081 0.919 9 N -0.624 5.624 10 C 0.160 3.840 11 C 0.097 3.903 12 H 0.090 0.910 13 O -0.570 6.570 14 C -0.093 4.093 15 H 0.106 0.894 16 C 0.154 3.846 17 N -0.697 5.697 18 C 0.559 3.441 19 O -0.557 6.557 20 C 0.101 3.899 21 N -0.457 5.457 22 C 0.073 3.927 23 C -0.086 4.086 24 C -0.059 4.059 25 C -0.125 4.125 26 C -0.189 4.189 27 S 0.128 5.872 28 C -0.182 4.182 29 C 0.144 3.856 30 H 0.248 0.752 31 H 0.024 0.976 32 H 0.015 0.985 33 H 0.391 0.609 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.416 0.584 37 H 0.202 0.798 38 H 0.190 0.810 39 H 0.188 0.812 40 H 0.204 0.796 41 H 0.048 0.952 42 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.848 -25.643 5.776 28.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.808 3.192 4 H -0.207 1.207 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.372 4.372 8 H 0.099 0.901 9 N -0.350 5.350 10 C 0.035 3.965 11 C 0.037 3.963 12 H 0.107 0.893 13 O -0.378 6.378 14 C -0.113 4.113 15 H 0.124 0.876 16 C 0.030 3.970 17 N -0.347 5.347 18 C 0.344 3.656 19 O -0.436 6.436 20 C -0.048 4.048 21 N -0.170 5.170 22 C -0.083 4.083 23 C -0.107 4.107 24 C -0.075 4.075 25 C -0.154 4.154 26 C -0.324 4.324 27 S 0.392 5.608 28 C -0.302 4.302 29 C 0.019 3.981 30 H 0.057 0.943 31 H 0.043 0.957 32 H 0.033 0.967 33 H 0.241 0.759 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.253 0.747 37 H 0.219 0.781 38 H 0.207 0.793 39 H 0.205 0.795 40 H 0.221 0.779 41 H 0.066 0.934 42 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 10.253 -25.489 4.705 27.874 hybrid contribution 1.213 1.314 0.461 1.847 sum 11.466 -24.175 5.166 27.250 Atomic orbital electron populations 1.70135 1.06186 1.25410 1.58284 1.25637 0.96700 1.00961 1.02544 0.85139 0.77160 0.78736 0.78213 1.20664 1.21942 1.20001 1.19423 0.91008 0.83698 1.43114 0.90126 1.44687 1.02381 1.00951 1.87008 1.21693 0.84389 0.91820 0.98635 1.22946 0.96641 0.92405 0.84322 0.89264 1.86384 1.50159 1.71123 1.30142 1.22569 0.95185 0.92804 1.00718 0.87554 1.20992 0.85262 0.92127 0.98588 1.45836 1.24429 1.13044 1.51408 1.18115 0.84727 0.82274 0.80476 1.90749 1.54669 1.59175 1.39005 1.20342 0.95635 0.89767 0.99025 1.67548 1.06515 1.35865 1.07041 1.23208 0.91761 0.95388 0.97907 1.22654 1.00698 0.92744 0.94579 1.20050 0.93036 0.95938 0.98463 1.21159 1.02390 0.91682 1.00175 1.26034 0.97918 1.05375 1.03090 1.85236 1.23736 1.01461 1.50403 1.23842 1.01514 0.99248 1.05570 1.21642 0.95162 0.84509 0.96782 0.94321 0.95746 0.96654 0.75923 0.92014 0.90581 0.74650 0.78109 0.79250 0.79463 0.77870 0.93412 0.97183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.95 10.31 21.65 0.22 -56.73 16 2 C -0.07 -3.75 5.49 84.86 0.47 -3.28 16 3 Si 0.98 46.00 29.55 68.60 2.03 48.03 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.24 -13.84 10.28 84.03 0.86 -12.98 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.62 -32.54 3.39 -691.94 -2.35 -34.89 16 10 C 0.16 7.80 5.14 86.73 0.45 8.24 16 11 C 0.10 3.53 4.09 31.79 0.13 3.66 16 12 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 13 O -0.57 -19.92 12.09 -148.98 -1.80 -21.72 16 14 C -0.09 -3.21 3.03 -9.40 -0.03 -3.24 16 15 H 0.11 3.35 8.14 -2.39 -0.02 3.34 16 16 C 0.15 4.94 4.74 86.37 0.41 5.35 16 17 N -0.70 -21.13 5.40 -465.95 -2.51 -23.64 16 18 C 0.56 18.07 7.80 86.80 0.68 18.74 16 19 O -0.56 -20.51 15.03 -3.88 -0.06 -20.57 16 20 C 0.10 2.82 6.78 42.18 0.29 3.10 16 21 N -0.46 -10.97 9.51 -184.87 -1.76 -12.73 16 22 C 0.07 1.14 11.12 84.57 0.94 2.08 16 23 C -0.09 -1.05 10.18 22.84 0.23 -0.81 16 24 C -0.06 -1.02 6.09 -20.35 -0.12 -1.14 16 25 C -0.13 -1.48 10.39 23.09 0.24 -1.24 16 26 C -0.19 -2.48 11.02 66.91 0.74 -1.74 16 27 S 0.13 2.91 21.43 -56.49 -1.21 1.70 16 28 C -0.18 -4.52 6.33 23.34 0.15 -4.38 16 29 C 0.14 6.11 6.40 86.86 0.56 6.67 16 30 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 31 H 0.02 1.31 7.38 -2.39 -0.02 1.29 16 32 H 0.02 0.84 7.43 -2.39 -0.02 0.82 16 33 H 0.39 10.74 9.12 -74.05 -0.68 10.07 16 34 H 0.06 2.28 7.42 -2.39 -0.02 2.26 16 35 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.42 11.73 7.66 -92.71 -0.71 11.02 16 37 H 0.20 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.19 0.55 8.06 -2.91 -0.02 0.52 16 39 H 0.19 0.73 8.06 -2.91 -0.02 0.71 16 40 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 41 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.01 0.47 8.00 -2.38 -0.02 0.45 16 Total: -1.00 -78.34 364.87 -1.77 -80.11 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -0.30 Total: 21.42 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 5.98 Total: 19.03 kcal Atomic # 7 Polarization: -121.59 SS G_CDS: -6.40 Total: -127.99 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -1.86 Total: -42.29 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -1.21 Total: 1.70 kcal Total: -78.34 -1.77 -80.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958151462.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.808 kcal (2) G-P(sol) polarization free energy of solvation -78.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds