Wall clock time and date at job start Wed Apr 1 2020 04:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86807 * 119.99689 * 2 1 4 4 H 1.48495 * 109.47248 * 240.00477 * 3 2 1 5 5 H 1.48498 * 109.46811 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46921 * 120.00127 * 3 2 1 7 7 C 1.38804 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99845 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00298 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.64663 * 180.02562 * 9 7 2 11 11 C 1.54327 * 107.26666 * 178.90559 * 10 9 7 12 12 H 1.09001 * 110.72073 * 96.34635 * 11 10 9 13 13 C 1.53001 * 110.71534 * 219.43966 * 11 10 9 14 14 N 1.46493 * 109.47363 * 293.54598 * 13 11 10 15 15 C 1.34782 * 120.00110 * 180.02562 * 14 13 11 16 16 O 1.21548 * 119.99837 * 359.97438 * 15 14 13 17 17 C 1.47875 * 119.99877 * 180.02562 * 15 14 13 18 18 N 1.32462 * 119.75283 * 359.74486 * 17 15 14 19 19 C 1.31763 * 121.97731 * 179.67986 * 18 17 15 20 20 C 1.37677 * 121.49545 * 0.32050 * 19 18 17 21 21 C 1.41113 * 119.38873 * 359.97438 * 20 19 18 22 22 C 1.44980 * 130.46294 * 180.02562 * 21 20 19 23 23 C 1.32008 * 114.84284 * 179.97438 * 22 21 20 24 24 S 1.75342 * 111.45886 * 0.02562 * 23 22 21 25 25 C 1.40258 * 117.63445 * 359.97438 * 21 20 19 26 26 C 1.55156 * 102.94409 * 337.80572 * 11 10 9 27 27 H 1.09003 * 111.00327 * 277.43023 * 26 11 10 28 28 O 1.42895 * 111.00482 * 153.57944 * 26 11 10 29 29 C 1.47422 * 125.64618 * 359.95579 * 9 7 2 30 30 H 0.96995 * 120.00318 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.88679 * 59.48344 * 10 9 7 32 32 H 1.09000 * 110.00926 * 298.38602 * 10 9 7 33 33 H 1.09003 * 109.46541 * 173.54439 * 13 11 10 34 34 H 1.08993 * 109.47010 * 53.55076 * 13 11 10 35 35 H 0.96997 * 120.00142 * 0.02562 * 14 13 11 36 36 H 1.08000 * 119.25289 * 180.29453 * 19 18 17 37 37 H 1.08003 * 120.30456 * 179.97438 * 20 19 18 38 38 H 1.07997 * 122.57983 * 0.02562 * 22 21 20 39 39 H 1.08003 * 124.26837 * 180.02562 * 23 22 21 40 40 H 0.96704 * 113.99935 * 180.02562 * 28 26 11 41 41 H 1.09000 * 110.36628 * 323.00375 * 29 9 7 42 42 H 1.09001 * 110.36524 * 85.21376 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 1.9321 -3.7274 -0.0005 11 6 0.7787 -4.7524 0.0276 12 1 0.5477 -5.1008 -0.9791 13 6 1.1241 -5.9309 0.9402 14 7 2.2395 -6.6850 0.3629 15 6 2.7176 -7.7733 0.9982 16 8 2.2235 -8.1289 2.0503 17 6 3.8439 -8.5341 0.4157 18 7 4.3760 -8.1446 -0.7331 19 6 5.3843 -8.7861 -1.2881 20 6 5.9354 -9.9038 -0.7029 21 6 5.4111 -10.3752 0.5194 22 6 5.7994 -11.5095 1.3347 23 6 5.0896 -11.6698 2.4361 24 16 3.8563 -10.4329 2.5901 25 6 4.3388 -9.6684 1.0832 26 6 -0.4011 -3.9321 0.6130 27 1 -0.3508 -3.8975 1.7013 28 8 -1.6563 -4.4573 0.1768 29 6 -0.1414 -2.5332 0.0009 30 1 -0.4850 0.8400 0.0004 31 1 2.5591 -3.8505 0.8824 32 1 2.5295 -3.8663 -0.9016 33 1 0.2558 -6.5828 1.0360 34 1 1.4084 -5.5575 1.9239 35 1 2.6341 -6.4010 -0.4764 36 1 5.7873 -8.4271 -2.2236 37 1 6.7614 -10.4150 -1.1750 38 1 6.6077 -12.1718 1.0623 39 1 5.2485 -12.4627 3.1520 40 1 -2.4234 -3.9767 0.5170 41 1 -0.5986 -1.7587 0.6168 42 1 -0.5283 -2.4851 -1.0170 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958151464.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:41 Heat of formation + Delta-G solvation = 5.964007 kcal Electronic energy + Delta-G solvation = -27120.265479 eV Core-core repulsion = 23192.764000 eV Total energy + Delta-G solvation = -3927.501479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.89513 -39.33812 -38.13703 -36.35489 -35.18418 -34.66355 -32.40395 -31.78129 -30.66801 -29.66966 -27.58270 -25.90738 -24.74386 -24.65464 -23.19325 -21.76215 -20.79911 -20.13422 -19.78169 -18.56863 -17.62048 -17.06406 -16.93840 -16.59723 -15.68801 -15.61658 -15.34142 -15.06716 -14.98171 -14.55300 -14.46799 -14.03935 -13.91770 -13.62271 -12.99837 -12.99077 -12.83579 -12.45260 -12.40214 -12.20212 -11.94893 -11.54449 -11.24142 -11.15551 -10.95123 -10.79177 -10.64282 -10.36917 -10.18119 -10.07357 -10.00925 -9.83862 -9.65102 -9.49947 -9.15993 -9.00054 -8.69700 -8.11915 -6.90057 -5.70503 -3.12914 0.04352 0.45414 1.16598 1.71982 1.77128 2.65511 3.01418 3.38647 3.42710 3.44029 3.54125 3.91474 4.07466 4.33002 4.42377 4.49759 4.73071 4.81384 4.97135 5.03164 5.06044 5.13674 5.26132 5.38030 5.45027 5.50494 5.63267 5.68604 5.82882 5.93710 6.02996 6.05863 6.10210 6.21687 6.37538 6.46871 6.61853 6.83300 7.28532 7.36707 7.55051 7.59280 7.75048 8.11188 8.17053 8.29884 9.15784 9.76555 10.39894 11.33543 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016760 B = 0.002349 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.254210 B =11914.978794 C =12758.333344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.011 4.011 3 Si 0.917 3.083 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.224 4.224 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.141 3.859 11 C -0.105 4.105 12 H 0.087 0.913 13 C 0.131 3.869 14 N -0.697 5.697 15 C 0.563 3.437 16 O -0.529 6.529 17 C 0.135 3.865 18 N -0.440 5.440 19 C 0.083 3.917 20 C -0.109 4.109 21 C -0.046 4.046 22 C -0.131 4.131 23 C -0.202 4.202 24 S 0.194 5.806 25 C -0.165 4.165 26 C 0.082 3.918 27 H 0.061 0.939 28 O -0.569 6.569 29 C 0.128 3.872 30 H 0.253 0.747 31 H 0.029 0.971 32 H 0.026 0.974 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.413 0.587 36 H 0.169 0.831 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.172 0.828 40 H 0.377 0.623 41 H 0.109 0.891 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.506 -23.762 1.268 25.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.747 3.253 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.352 4.352 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.015 3.985 11 C -0.124 4.124 12 H 0.106 0.894 13 C 0.008 3.992 14 N -0.348 5.348 15 C 0.347 3.653 16 O -0.406 6.406 17 C -0.015 4.015 18 N -0.153 5.153 19 C -0.071 4.071 20 C -0.131 4.131 21 C -0.063 4.063 22 C -0.162 4.162 23 C -0.338 4.338 24 S 0.458 5.542 25 C -0.284 4.284 26 C 0.021 3.979 27 H 0.079 0.921 28 O -0.374 6.374 29 C 0.003 3.997 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.250 0.750 36 H 0.186 0.814 37 H 0.163 0.837 38 H 0.166 0.834 39 H 0.189 0.811 40 H 0.224 0.776 41 H 0.127 0.873 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 8.050 -23.191 2.396 24.665 hybrid contribution 1.923 0.307 -0.975 2.178 sum 9.973 -22.883 1.421 25.002 Atomic orbital electron populations 1.69751 1.04930 1.25026 1.57527 1.24800 0.95765 0.97819 1.02248 0.86116 0.78395 0.82831 0.77942 1.21144 1.21533 1.21101 1.19051 0.90537 0.82271 1.43316 0.90329 1.44307 1.01601 0.99827 1.87068 1.21366 0.93290 0.85415 0.98447 1.22407 0.96268 0.94073 0.99672 0.89438 1.21533 0.88237 0.92384 0.97029 1.45858 1.35153 1.27187 1.26556 1.17733 0.82177 0.81003 0.84366 1.90774 1.59338 1.68394 1.22129 1.20639 0.96580 0.92565 0.91747 1.67606 1.09720 1.29773 1.08169 1.22532 0.92359 0.92309 0.99940 1.22139 1.00199 0.97035 0.93680 1.19517 0.95201 0.95498 0.96036 1.20773 1.02664 0.97955 0.94759 1.25783 1.01380 1.04704 1.01896 1.85091 1.32293 1.19426 1.17396 1.23676 1.01707 1.00927 1.02138 1.23305 0.82114 0.95495 0.96959 0.92093 1.86371 1.15717 1.58894 1.76380 1.22537 0.85343 0.92510 0.99311 0.93586 0.95342 0.95562 0.90804 0.90911 0.75038 0.81359 0.83738 0.83373 0.81060 0.77635 0.87321 0.95966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.55 10.09 55.49 0.56 -25.99 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 3 Si 0.92 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.22 -6.18 10.27 -15.06 -0.15 -6.34 16 8 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 9 N -0.60 -15.25 3.39 -170.09 -0.58 -15.83 16 10 C 0.14 2.90 6.52 -3.06 -0.02 2.88 16 11 C -0.10 -1.87 2.75 -88.78 -0.24 -2.11 16 12 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 13 C 0.13 2.08 4.99 -4.04 -0.02 2.06 16 14 N -0.70 -10.36 5.39 -61.24 -0.33 -10.69 16 15 C 0.56 8.73 7.80 -12.31 -0.10 8.63 16 16 O -0.53 -9.19 15.03 5.32 0.08 -9.11 16 17 C 0.13 1.85 6.78 -82.76 -0.56 1.29 16 18 N -0.44 -5.41 9.51 -9.78 -0.09 -5.50 16 19 C 0.08 0.75 11.12 -17.79 -0.20 0.56 16 20 C -0.11 -0.86 10.18 -38.70 -0.39 -1.26 16 21 C -0.05 -0.46 6.09 -105.38 -0.64 -1.10 16 22 C -0.13 -1.01 10.39 -38.83 -0.40 -1.41 16 23 C -0.20 -1.55 11.02 28.82 0.32 -1.23 16 24 S 0.19 2.15 21.43 -107.50 -2.30 -0.15 16 25 C -0.17 -2.05 6.33 -37.93 -0.24 -2.29 16 26 C 0.08 1.56 3.87 -24.59 -0.10 1.46 16 27 H 0.06 1.14 8.05 -51.93 -0.42 0.72 16 28 O -0.57 -9.86 13.47 -35.23 -0.47 -10.34 16 29 C 0.13 3.07 5.62 -2.54 -0.01 3.06 16 30 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.03 0.59 7.76 -51.93 -0.40 0.19 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 1.21 8.06 -51.93 -0.42 0.79 16 35 H 0.41 5.76 7.65 -40.82 -0.31 5.45 16 36 H 0.17 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 38 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.17 0.79 8.06 -52.48 -0.42 0.37 16 40 H 0.38 5.07 9.12 45.56 0.42 5.49 16 41 H 0.11 2.88 5.87 -51.93 -0.31 2.57 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 365.89 15.07 5.51 5.51 Total: -1.00 -33.51 365.89 -9.88 -43.39 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -4.37 Total: 8.01 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -2.86 Total: 3.80 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.44 Total: -58.00 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.39 Total: -19.44 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.30 Total: -0.15 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.51 -9.88 -43.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958151464.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.358 kcal (2) G-P(sol) polarization free energy of solvation -33.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds