Wall clock time and date at job start Wed Apr 1 2020 04:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86807 * 119.99689 * 2 1 4 4 H 1.48495 * 109.47248 * 240.00477 * 3 2 1 5 5 H 1.48498 * 109.46811 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46921 * 120.00127 * 3 2 1 7 7 C 1.38804 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99845 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00298 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.64663 * 180.02562 * 9 7 2 11 11 C 1.54327 * 107.26666 * 178.90559 * 10 9 7 12 12 H 1.09001 * 110.72073 * 96.34635 * 11 10 9 13 13 C 1.53001 * 110.71534 * 219.43966 * 11 10 9 14 14 N 1.46493 * 109.47363 * 293.54598 * 13 11 10 15 15 C 1.34782 * 120.00110 * 180.02562 * 14 13 11 16 16 O 1.21548 * 119.99837 * 359.97438 * 15 14 13 17 17 C 1.47875 * 119.99877 * 180.02562 * 15 14 13 18 18 N 1.32462 * 119.75283 * 359.74486 * 17 15 14 19 19 C 1.31763 * 121.97731 * 179.67986 * 18 17 15 20 20 C 1.37677 * 121.49545 * 0.32050 * 19 18 17 21 21 C 1.41113 * 119.38873 * 359.97438 * 20 19 18 22 22 C 1.44980 * 130.46294 * 180.02562 * 21 20 19 23 23 C 1.32008 * 114.84284 * 179.97438 * 22 21 20 24 24 S 1.75342 * 111.45886 * 0.02562 * 23 22 21 25 25 C 1.40258 * 117.63445 * 359.97438 * 21 20 19 26 26 C 1.55156 * 102.94409 * 337.80572 * 11 10 9 27 27 H 1.09003 * 111.00327 * 277.43023 * 26 11 10 28 28 O 1.42895 * 111.00482 * 153.57944 * 26 11 10 29 29 C 1.47422 * 125.64618 * 359.95579 * 9 7 2 30 30 H 0.96995 * 120.00318 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.88679 * 59.48344 * 10 9 7 32 32 H 1.09000 * 110.00926 * 298.38602 * 10 9 7 33 33 H 1.09003 * 109.46541 * 173.54439 * 13 11 10 34 34 H 1.08993 * 109.47010 * 53.55076 * 13 11 10 35 35 H 0.96997 * 120.00142 * 0.02562 * 14 13 11 36 36 H 1.08000 * 119.25289 * 180.29453 * 19 18 17 37 37 H 1.08003 * 120.30456 * 179.97438 * 20 19 18 38 38 H 1.07997 * 122.57983 * 0.02562 * 22 21 20 39 39 H 1.08003 * 124.26837 * 180.02562 * 23 22 21 40 40 H 0.96704 * 113.99935 * 180.02562 * 28 26 11 41 41 H 1.09000 * 110.36628 * 323.00375 * 29 9 7 42 42 H 1.09001 * 110.36524 * 85.21376 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 1.9321 -3.7274 -0.0005 11 6 0.7787 -4.7524 0.0276 12 1 0.5477 -5.1008 -0.9791 13 6 1.1241 -5.9309 0.9402 14 7 2.2395 -6.6850 0.3629 15 6 2.7176 -7.7733 0.9982 16 8 2.2235 -8.1289 2.0503 17 6 3.8439 -8.5341 0.4157 18 7 4.3760 -8.1446 -0.7331 19 6 5.3843 -8.7861 -1.2881 20 6 5.9354 -9.9038 -0.7029 21 6 5.4111 -10.3752 0.5194 22 6 5.7994 -11.5095 1.3347 23 6 5.0896 -11.6698 2.4361 24 16 3.8563 -10.4329 2.5901 25 6 4.3388 -9.6684 1.0832 26 6 -0.4011 -3.9321 0.6130 27 1 -0.3508 -3.8975 1.7013 28 8 -1.6563 -4.4573 0.1768 29 6 -0.1414 -2.5332 0.0009 30 1 -0.4850 0.8400 0.0004 31 1 2.5591 -3.8505 0.8824 32 1 2.5295 -3.8663 -0.9016 33 1 0.2558 -6.5828 1.0360 34 1 1.4084 -5.5575 1.9239 35 1 2.6341 -6.4010 -0.4764 36 1 5.7873 -8.4271 -2.2236 37 1 6.7614 -10.4150 -1.1750 38 1 6.6077 -12.1718 1.0623 39 1 5.2485 -12.4627 3.1520 40 1 -2.4234 -3.9767 0.5170 41 1 -0.5986 -1.7587 0.6168 42 1 -0.5283 -2.4851 -1.0170 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958151464.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:39 Heat of formation + Delta-G solvation = -19.290241 kcal Electronic energy + Delta-G solvation = -27121.360586 eV Core-core repulsion = 23192.764000 eV Total energy + Delta-G solvation = -3928.596586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.76997 -40.50399 -39.65727 -37.05032 -36.67533 -36.18949 -34.08755 -32.76836 -31.41203 -31.28982 -29.32492 -27.47556 -26.10718 -25.35979 -24.58736 -22.65120 -22.24411 -21.50531 -21.19450 -19.48576 -18.96803 -18.51331 -18.25960 -17.65981 -17.06939 -16.79738 -16.68628 -16.11457 -15.86113 -15.74754 -15.64044 -15.16388 -15.06646 -14.91261 -14.75323 -14.30684 -14.04502 -13.69433 -13.61317 -13.28989 -13.17938 -13.11450 -12.89985 -12.73315 -12.42726 -12.37721 -12.01177 -11.90103 -11.88876 -11.41635 -11.22685 -10.94183 -10.91643 -10.76368 -10.73579 -10.24616 -10.20144 -8.94034 -8.90009 -7.80453 -5.26032 -0.71524 -0.30850 0.41129 1.04577 1.09608 1.46748 1.49848 1.56190 1.70837 1.91457 2.47113 2.69532 3.01365 3.20199 3.29648 3.46358 3.56643 3.60272 3.71457 3.75870 3.88876 4.07375 4.18062 4.30576 4.39894 4.43309 4.44763 4.55879 4.57616 4.69140 4.80704 4.85336 4.93939 5.03231 5.19345 5.24755 5.28307 5.41599 5.45612 5.46800 5.72394 6.23462 6.26954 6.66505 6.88316 6.97724 7.06641 7.72391 8.35359 9.21344 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016760 B = 0.002349 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.254210 B =11914.978794 C =12758.333344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.066 4.066 3 Si 0.982 3.018 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.083 0.917 9 N -0.623 5.623 10 C 0.141 3.859 11 C -0.088 4.088 12 H 0.091 0.909 13 C 0.146 3.854 14 N -0.695 5.695 15 C 0.560 3.440 16 O -0.556 6.556 17 C 0.100 3.900 18 N -0.457 5.457 19 C 0.073 3.927 20 C -0.085 4.085 21 C -0.059 4.059 22 C -0.125 4.125 23 C -0.189 4.189 24 S 0.128 5.872 25 C -0.182 4.182 26 C 0.098 3.902 27 H 0.070 0.930 28 O -0.568 6.568 29 C 0.134 3.866 30 H 0.249 0.751 31 H 0.030 0.970 32 H 0.033 0.967 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.417 0.583 36 H 0.203 0.797 37 H 0.191 0.809 38 H 0.188 0.812 39 H 0.204 0.796 40 H 0.395 0.605 41 H 0.081 0.919 42 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.179 -25.996 0.490 28.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.810 3.190 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.370 4.370 8 H 0.101 0.899 9 N -0.350 5.350 10 C 0.016 3.984 11 C -0.107 4.107 12 H 0.109 0.891 13 C 0.022 3.978 14 N -0.346 5.346 15 C 0.345 3.655 16 O -0.435 6.435 17 C -0.048 4.048 18 N -0.170 5.170 19 C -0.083 4.083 20 C -0.106 4.106 21 C -0.075 4.075 22 C -0.154 4.154 23 C -0.324 4.324 24 S 0.392 5.608 25 C -0.301 4.301 26 C 0.038 3.962 27 H 0.088 0.912 28 O -0.375 6.375 29 C 0.008 3.992 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.255 0.745 36 H 0.219 0.781 37 H 0.208 0.792 38 H 0.205 0.795 39 H 0.221 0.779 40 H 0.244 0.756 41 H 0.099 0.901 42 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges 10.727 -25.453 1.619 27.669 hybrid contribution 1.183 0.910 -0.815 1.701 sum 11.910 -24.543 0.805 27.292 Atomic orbital electron populations 1.69995 1.06186 1.25290 1.58348 1.25651 0.96698 1.01043 1.02420 0.85095 0.77126 0.78547 0.78209 1.20398 1.21850 1.20255 1.19430 0.91092 0.83521 1.43005 0.89933 1.44591 1.02388 1.00968 1.87048 1.21470 0.94226 0.84088 0.98619 1.22227 0.94555 0.93750 1.00214 0.89086 1.21262 0.88817 0.91641 0.96090 1.45764 1.34920 1.27201 1.26707 1.18116 0.82511 0.80823 0.84017 1.90748 1.60405 1.69105 1.23268 1.20313 0.97408 0.93844 0.93240 1.67546 1.10874 1.30707 1.07823 1.23209 0.91507 0.92599 1.00942 1.22661 0.99921 0.95818 0.92214 1.20051 0.94510 0.95981 0.96947 1.21161 1.03086 0.97299 0.93844 1.26033 0.99591 1.03986 1.02799 1.85233 1.35227 1.22002 1.18384 1.23838 1.02796 1.01106 1.02400 1.22970 0.83419 0.92835 0.97012 0.91246 1.86346 1.15757 1.58831 1.76582 1.22322 0.84747 0.94775 0.97338 0.94153 0.95178 0.94886 0.90566 0.91629 0.74544 0.78072 0.79227 0.79450 0.77873 0.75572 0.90127 0.98924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.03 10.09 21.65 0.22 -55.81 16 2 C -0.07 -3.70 5.49 84.86 0.47 -3.24 16 3 Si 0.98 45.47 29.55 68.60 2.03 47.49 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.24 -13.57 10.27 84.03 0.86 -12.71 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.62 -32.24 3.39 -692.03 -2.35 -34.59 16 10 C 0.14 5.84 6.52 86.73 0.57 6.40 16 11 C -0.09 -3.13 2.75 -9.60 -0.03 -3.15 16 12 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 13 C 0.15 4.63 4.99 86.38 0.43 5.06 16 14 N -0.70 -20.92 5.39 -465.95 -2.51 -23.43 16 15 C 0.56 17.88 7.80 86.79 0.68 18.56 16 16 O -0.56 -20.17 15.03 -3.87 -0.06 -20.23 16 17 C 0.10 2.78 6.78 42.18 0.29 3.06 16 18 N -0.46 -10.82 9.51 -184.87 -1.76 -12.58 16 19 C 0.07 1.12 11.12 84.57 0.94 2.06 16 20 C -0.09 -1.01 10.18 22.84 0.23 -0.78 16 21 C -0.06 -1.01 6.09 -20.35 -0.12 -1.13 16 22 C -0.13 -1.45 10.39 23.09 0.24 -1.21 16 23 C -0.19 -2.45 11.02 66.91 0.74 -1.71 16 24 S 0.13 2.88 21.43 -56.49 -1.21 1.67 16 25 C -0.18 -4.47 6.33 23.34 0.15 -4.32 16 26 C 0.10 3.77 3.87 31.98 0.12 3.89 16 27 H 0.07 2.58 8.05 -2.39 -0.02 2.56 16 28 O -0.57 -19.33 13.47 -148.98 -2.01 -21.34 16 29 C 0.13 6.61 5.62 86.85 0.49 7.09 16 30 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 31 H 0.03 1.25 7.76 -2.39 -0.02 1.23 16 32 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.07 2.20 8.06 -2.39 -0.02 2.18 16 35 H 0.42 11.69 7.65 -92.71 -0.71 10.98 16 36 H 0.20 1.57 8.06 -2.91 -0.02 1.54 16 37 H 0.19 0.50 8.06 -2.91 -0.02 0.47 16 38 H 0.19 0.70 8.06 -2.91 -0.02 0.68 16 39 H 0.20 1.19 8.06 -2.91 -0.02 1.16 16 40 H 0.39 10.33 9.12 -74.05 -0.68 9.66 16 41 H 0.08 4.44 5.87 -2.39 -0.01 4.43 16 42 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 Total: -1.00 -76.00 365.89 -1.90 -77.90 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: -0.30 Total: 23.03 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: 6.05 Total: 17.88 kcal Atomic # 7 Polarization: -120.01 SS G_CDS: -6.40 Total: -126.41 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -2.07 Total: -41.57 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -1.21 Total: 1.67 kcal Total: -76.00 -1.90 -77.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958151464.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.610 kcal (2) G-P(sol) polarization free energy of solvation -76.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds