Wall clock time and date at job start Wed Apr 1 2020 04:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00082 * 2 1 4 4 H 1.48496 * 109.47008 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46883 * 59.99842 * 3 2 1 6 6 H 1.48496 * 109.47035 * 300.00140 * 3 2 1 7 7 C 1.38805 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99876 * 207.28212 * 7 2 1 9 9 N 1.36938 * 120.00326 * 27.28488 * 7 2 1 10 10 C 1.47423 * 125.64840 * 13.30689 * 9 7 2 11 11 C 1.55125 * 104.72395 * 155.81746 * 10 9 7 12 12 H 1.09001 * 111.19051 * 279.19096 * 11 10 9 13 13 O 1.42902 * 110.93665 * 155.28677 * 11 10 9 14 14 C 1.55154 * 101.48572 * 37.29433 * 11 10 9 15 15 H 1.09003 * 110.71834 * 82.69257 * 14 11 10 16 16 C 1.52998 * 110.87269 * 205.89774 * 14 11 10 17 17 N 1.46495 * 109.47101 * 180.02562 * 16 14 11 18 18 C 1.34778 * 120.00075 * 180.02562 * 17 16 14 19 19 O 1.21615 * 120.00008 * 359.97438 * 18 17 16 20 20 C 1.47366 * 119.99979 * 180.02562 * 18 17 16 21 21 C 1.38763 * 120.55636 * 359.71903 * 20 18 17 22 22 N 1.31902 * 121.12285 * 179.77195 * 21 20 18 23 23 C 1.31674 * 122.21720 * 0.48054 * 22 21 20 24 24 C 1.39293 * 121.13913 * 359.78285 * 23 22 21 25 25 S 1.75878 * 131.39288 * 180.02562 * 24 23 22 26 26 C 1.75549 * 91.52414 * 179.97438 * 25 24 23 27 27 C 1.32478 * 110.79502 * 359.97438 * 26 25 24 28 28 C 1.40010 * 115.77838 * 0.02562 * 27 26 25 29 29 C 1.47022 * 125.65145 * 193.61334 * 9 7 2 30 30 H 0.96994 * 120.00297 * 185.84782 * 1 2 3 31 31 H 1.09002 * 110.36499 * 274.75332 * 10 9 7 32 32 H 1.09005 * 110.36367 * 37.06338 * 10 9 7 33 33 H 0.96700 * 113.99787 * 67.96452 * 13 11 10 34 34 H 1.08998 * 109.47073 * 300.06479 * 16 14 11 35 35 H 1.08995 * 109.47340 * 60.06701 * 16 14 11 36 36 H 0.97009 * 120.00648 * 0.02562 * 17 16 14 37 37 H 1.07998 * 119.43518 * 0.02562 * 21 20 18 38 38 H 1.07998 * 119.42734 * 179.75187 * 23 22 21 39 39 H 1.07996 * 124.60232 * 180.02562 * 26 25 24 40 40 H 1.07998 * 122.11513 * 180.02562 * 27 26 25 41 41 H 1.08999 * 109.88184 * 300.44569 * 29 9 7 42 42 H 1.09000 * 109.87675 * 61.44592 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 1.2125 6 1 1.8915 2.3964 -1.2125 7 6 2.0101 -1.2021 0.0005 8 1 3.0000 -1.2540 0.4293 9 7 1.4397 -2.3223 -0.5426 10 6 0.2378 -2.3469 -1.3960 11 6 0.3682 -3.6527 -2.2231 12 1 1.0380 -3.5161 -3.0722 13 8 -0.9137 -4.1141 -2.6544 14 6 0.9848 -4.6199 -1.1784 15 1 0.2095 -5.0425 -0.5393 16 6 1.7809 -5.7305 -1.8668 17 7 2.3478 -6.6245 -0.8542 18 6 3.0935 -7.6822 -1.2307 19 8 3.2953 -7.8947 -2.4110 20 6 3.6634 -8.5819 -0.2121 21 6 3.4444 -8.3476 1.1380 22 7 3.9454 -9.1481 2.0589 23 6 4.6805 -10.1967 1.7529 24 6 4.9631 -10.5161 0.4269 25 16 5.8975 -11.8281 -0.2796 26 6 5.5746 -11.2459 -1.9039 27 6 4.8234 -10.1552 -1.8720 28 6 4.4552 -9.7066 -0.5979 29 6 1.9207 -3.7004 -0.3661 30 1 -0.4850 -0.8356 0.0856 31 1 -0.6627 -2.3720 -0.7823 32 1 0.2237 -1.4797 -2.0563 33 1 -1.3382 -3.5417 -3.3080 34 1 1.1208 -6.2969 -2.5238 35 1 2.5867 -5.2897 -2.4536 36 1 2.1866 -6.4553 0.0873 37 1 2.8503 -7.4976 1.4396 38 1 5.0714 -10.8197 2.5438 39 1 5.9383 -11.7139 -2.8067 40 1 4.5145 -9.6442 -2.7719 41 1 2.9412 -3.7874 -0.7390 42 1 1.8874 -3.9723 0.6889 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958344404.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:34 Heat of formation + Delta-G solvation = -22.716709 kcal Electronic energy + Delta-G solvation = -27209.339821 eV Core-core repulsion = 23280.594652 eV Total energy + Delta-G solvation = -3928.745168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.98467 -40.57787 -39.74764 -37.49074 -36.84775 -36.24394 -34.30879 -32.99463 -31.43017 -31.13132 -29.52114 -27.25438 -26.00920 -25.65226 -24.65908 -22.58337 -22.15674 -21.75625 -21.46769 -19.76950 -19.48098 -18.54633 -18.46185 -17.49087 -17.18125 -16.82461 -16.66162 -16.42225 -16.03565 -15.62963 -15.44045 -15.39467 -15.26966 -15.14036 -14.89080 -14.46520 -14.06099 -13.92777 -13.77382 -13.62209 -13.35037 -13.14116 -12.79142 -12.64894 -12.45346 -12.34880 -12.00540 -11.88471 -11.77516 -11.63635 -11.41807 -11.07016 -10.99583 -10.68816 -10.57044 -10.29617 -10.14580 -9.08875 -8.94633 -8.36115 -5.36692 -0.91203 -0.39181 0.34100 0.75415 1.20695 1.57483 1.64070 1.64941 1.81351 1.91337 2.59501 2.63782 2.99490 3.15155 3.20595 3.36579 3.45718 3.50083 3.62513 3.64879 3.73709 3.92310 3.94209 4.10413 4.24292 4.25578 4.27992 4.42138 4.46770 4.63689 4.75847 4.78430 4.80445 4.94374 5.01161 5.08695 5.11676 5.17223 5.26692 5.28179 5.61255 6.26698 6.31104 6.63523 6.75894 6.84768 6.98856 7.65159 8.20610 8.96863 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.017534 B = 0.002242 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.548664 B =12486.567566 C =13233.000252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.079 4.079 3 Si 1.119 2.881 4 H -0.273 1.273 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.345 4.345 8 H 0.065 0.935 9 N -0.624 5.624 10 C 0.124 3.876 11 C 0.109 3.891 12 H 0.080 0.920 13 O -0.565 6.565 14 C -0.088 4.088 15 H 0.094 0.906 16 C 0.149 3.851 17 N -0.710 5.710 18 C 0.565 3.435 19 O -0.564 6.564 20 C -0.172 4.172 21 C 0.131 3.869 22 N -0.494 5.494 23 C 0.189 3.811 24 C -0.238 4.238 25 S 0.180 5.820 26 C -0.155 4.155 27 C -0.158 4.158 28 C 0.000 4.000 29 C 0.139 3.861 30 H 0.257 0.743 31 H 0.011 0.989 32 H 0.028 0.972 33 H 0.397 0.603 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.411 0.589 37 H 0.179 0.821 38 H 0.200 0.800 39 H 0.206 0.794 40 H 0.150 0.850 41 H 0.036 0.964 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.173 -25.749 -1.836 27.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.274 4.274 3 Si 0.944 3.056 4 H -0.198 1.198 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.473 4.473 8 H 0.083 0.917 9 N -0.353 5.353 10 C -0.002 4.002 11 C 0.048 3.952 12 H 0.097 0.903 13 O -0.372 6.372 14 C -0.108 4.108 15 H 0.113 0.887 16 C 0.025 3.975 17 N -0.362 5.362 18 C 0.353 3.647 19 O -0.445 6.445 20 C -0.179 4.179 21 C -0.022 4.022 22 N -0.203 5.203 23 C 0.022 3.978 24 C -0.356 4.356 25 S 0.443 5.557 26 C -0.291 4.291 27 C -0.188 4.188 28 C -0.017 4.017 29 C 0.014 3.986 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.046 0.954 33 H 0.247 0.753 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.248 0.752 37 H 0.196 0.804 38 H 0.216 0.784 39 H 0.223 0.777 40 H 0.167 0.833 41 H 0.054 0.946 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 10.953 -25.659 -0.893 27.913 hybrid contribution -1.069 0.445 -1.196 1.664 sum 9.884 -25.214 -2.088 27.162 Atomic orbital electron populations 1.70848 1.07571 1.29675 1.51074 1.27116 0.96575 1.04396 0.99342 0.82807 0.74211 0.71901 0.76705 1.19775 1.21794 1.21340 1.20073 0.99292 0.88974 1.39008 0.91731 1.44662 1.31361 1.02513 1.56717 1.22124 0.89529 0.96241 0.92321 1.22804 0.85141 0.91920 0.95312 0.90253 1.86386 1.32728 1.53383 1.64707 1.22238 0.97420 0.94227 0.96867 0.88748 1.21180 0.96675 0.89479 0.90183 1.45823 1.51988 1.27037 1.11346 1.18042 0.78108 0.80601 0.87975 1.90711 1.60916 1.73680 1.19152 1.20727 1.04239 0.97948 0.95026 1.23024 0.94703 0.97418 0.87034 1.67841 1.10624 1.05030 1.36834 1.23007 0.89814 0.92041 0.92918 1.24153 1.08525 1.03879 0.99017 1.84000 1.50838 1.24665 0.96174 1.26056 1.01071 0.98984 1.02946 1.20221 1.01942 0.98793 0.97800 1.18505 0.95533 0.93863 0.93831 1.21528 0.96089 0.83684 0.97281 0.93212 0.97145 0.95397 0.75347 0.90405 0.91528 0.75170 0.80388 0.78361 0.77741 0.83268 0.94618 0.95109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.90 12.82 21.65 0.28 -57.62 16 2 C -0.08 -4.49 5.09 84.86 0.43 -4.05 16 3 Si 1.12 50.98 30.00 68.60 2.06 53.04 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.35 -19.36 10.05 84.03 0.84 -18.51 16 8 H 0.06 3.59 7.96 -2.91 -0.02 3.57 16 9 N -0.62 -31.08 3.33 -691.57 -2.30 -33.38 16 10 C 0.12 5.69 4.96 86.93 0.43 6.12 16 11 C 0.11 3.73 3.89 32.06 0.12 3.85 16 12 H 0.08 2.55 8.05 -2.39 -0.02 2.54 16 13 O -0.56 -17.03 13.47 -148.98 -2.01 -19.04 16 14 C -0.09 -2.78 2.74 -9.61 -0.03 -2.81 16 15 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 16 C 0.15 4.07 5.01 86.38 0.43 4.50 16 17 N -0.71 -17.42 5.35 -466.45 -2.50 -19.91 16 18 C 0.57 15.41 7.77 86.65 0.67 16.08 16 19 O -0.56 -18.47 14.47 -4.08 -0.06 -18.52 16 20 C -0.17 -4.12 5.94 -19.59 -0.12 -4.24 16 21 C 0.13 2.72 10.67 84.81 0.90 3.63 16 22 N -0.49 -10.08 10.32 -194.65 -2.01 -12.09 16 23 C 0.19 3.08 11.20 84.97 0.95 4.04 16 24 C -0.24 -4.23 6.52 22.98 0.15 -4.08 16 25 S 0.18 2.12 23.29 -56.49 -1.32 0.81 16 26 C -0.15 -2.10 11.10 66.69 0.74 -1.36 16 27 C -0.16 -3.31 9.43 21.57 0.20 -3.11 16 28 C 0.00 0.00 5.88 -21.24 -0.12 -0.13 16 29 C 0.14 5.37 6.52 86.73 0.57 5.94 16 30 H 0.26 15.90 5.83 -92.71 -0.54 15.36 16 31 H 0.01 0.54 6.84 -2.39 -0.02 0.53 16 32 H 0.03 1.41 7.73 -2.38 -0.02 1.39 16 33 H 0.40 8.82 9.12 -74.06 -0.68 8.14 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.07 1.95 8.06 -2.39 -0.02 1.93 16 36 H 0.41 8.40 6.36 -92.70 -0.59 7.81 16 37 H 0.18 2.92 6.37 -2.91 -0.02 2.90 16 38 H 0.20 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.21 1.39 8.06 -2.91 -0.02 1.37 16 40 H 0.15 3.64 6.28 -2.91 -0.02 3.62 16 41 H 0.04 1.37 7.77 -2.39 -0.02 1.35 16 42 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -76.10 362.05 -1.61 -77.71 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.06 Total: 23.14 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 6.19 Total: 5.86 kcal Atomic # 7 Polarization: -116.47 SS G_CDS: -6.53 Total: -123.00 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -2.07 Total: -37.56 kcal Atomic # 14 Polarization: 50.98 SS G_CDS: 2.06 Total: 53.04 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -1.32 Total: 0.81 kcal Total: -76.10 -1.61 -77.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958344404.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.989 kcal (2) G-P(sol) polarization free energy of solvation -76.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds