Wall clock time and date at job start Wed Apr 1 2020 04:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99977 * 2 1 4 4 H 1.48501 * 109.47071 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47044 * 239.99471 * 3 2 1 6 6 H 1.48508 * 109.47206 * 119.99692 * 3 2 1 7 7 C 1.38816 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00031 * 215.12573 * 7 2 1 9 9 N 1.36939 * 119.99628 * 35.12701 * 7 2 1 10 10 C 1.43464 * 118.94095 * 202.53145 * 9 7 2 11 11 C 1.53797 * 107.96011 * 273.61298 * 10 9 7 12 12 C 1.47142 * 111.83961 * 281.66495 * 11 10 9 13 13 N 1.48208 * 110.34300 * 58.29847 * 12 11 10 14 14 C 1.34780 * 119.97125 * 102.46725 * 13 12 11 15 15 O 1.21632 * 119.99814 * 355.87563 * 14 13 12 16 16 C 1.47297 * 120.00048 * 175.87640 * 14 13 12 17 17 C 1.35171 * 122.41480 * 186.09146 * 16 14 13 18 18 S 1.71001 * 109.15741 * 179.86294 * 17 16 14 19 19 C 1.75995 * 90.59912 * 0.32655 * 18 17 16 20 20 C 1.47141 * 125.33067 * 179.82545 * 19 18 17 21 21 C 1.36233 * 125.95748 * 359.97438 * 20 19 18 22 22 C 1.40770 * 106.72282 * 179.97438 * 21 20 19 23 23 C 1.34834 * 107.07229 * 359.97438 * 22 21 20 24 24 O 1.34245 * 108.71944 * 359.75889 * 23 22 21 25 25 N 1.30122 * 109.33691 * 359.80893 * 19 18 17 26 26 C 1.43623 * 120.06249 * 282.49098 * 13 12 11 27 27 C 1.48864 * 118.94057 * 22.26738 * 9 7 2 28 28 H 0.97005 * 119.99880 * 185.81049 * 1 2 3 29 29 H 1.09004 * 109.76195 * 33.22584 * 10 9 7 30 30 H 1.09000 * 109.76375 * 153.94191 * 10 9 7 31 31 H 1.08999 * 109.00658 * 42.27032 * 11 10 9 32 32 H 1.08998 * 109.00475 * 161.13395 * 11 10 9 33 33 H 1.08999 * 109.32137 * 178.56691 * 12 11 10 34 34 H 1.09000 * 109.32567 * 298.20736 * 12 11 10 35 35 H 1.07995 * 125.42212 * 359.97438 * 17 16 14 36 36 H 1.08002 * 126.64220 * 359.94141 * 21 20 19 37 37 H 1.07997 * 126.46455 * 180.02562 * 22 21 20 38 38 H 1.07998 * 125.64128 * 180.02562 * 23 22 21 39 39 H 1.08998 * 108.87703 * 211.44587 * 26 13 12 40 40 H 1.09002 * 108.87143 * 329.88581 * 26 13 12 41 41 H 1.08999 * 109.47402 * 260.62591 * 27 9 7 42 42 H 1.08995 * 109.48030 * 20.65422 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1040 1.6963 -1.2124 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 2.9428 -1.2870 0.5387 9 7 1.5127 -2.2804 -0.6814 10 6 1.9335 -3.5977 -0.2997 11 6 3.2383 -3.9147 -1.0496 12 6 2.9868 -4.2979 -2.4478 13 7 2.2689 -3.2131 -3.1582 14 6 2.9395 -2.3988 -3.9970 15 8 4.1455 -2.5057 -4.1139 16 6 2.2119 -1.3793 -4.7723 17 6 2.8137 -0.6192 -5.7142 18 16 1.6610 0.4413 -6.4002 19 6 0.4092 -0.2089 -5.3478 20 6 -0.9956 0.2283 -5.3256 21 6 -1.5441 1.1980 -6.1096 22 6 -2.9037 1.2847 -5.7552 23 6 -3.1183 0.3745 -4.7838 24 8 -1.9657 -0.2654 -4.5307 25 7 0.9204 -1.1372 -4.5926 26 6 0.8594 -3.0286 -2.9532 27 6 0.5478 -2.0481 -1.7910 28 1 -0.4850 -0.8358 0.0851 29 1 2.1089 -3.6315 0.7756 30 1 1.1661 -4.3228 -0.5708 31 1 3.8802 -3.0339 -1.0329 32 1 3.7480 -4.7348 -0.5441 33 1 3.9373 -4.4881 -2.9462 34 1 2.3802 -5.2032 -2.4702 35 1 3.8562 -0.6741 -5.9908 36 1 -1.0344 1.7868 -6.8580 37 1 -3.6367 1.9534 -6.1815 38 1 -4.0624 0.1880 -4.2937 39 1 0.4175 -2.6401 -3.8707 40 1 0.4066 -3.9941 -2.7273 41 1 -0.4672 -2.2166 -1.4312 42 1 0.6422 -1.0219 -2.1459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981840364.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:36 Heat of formation + Delta-G solvation = 83.685145 kcal Electronic energy + Delta-G solvation = -29469.480977 eV Core-core repulsion = 25545.349739 eV Total energy + Delta-G solvation = -3924.131238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.53600 -40.55218 -38.56157 -36.98095 -34.34278 -33.19207 -32.71736 -31.68928 -30.71921 -28.96879 -27.53492 -26.17576 -24.93027 -23.54192 -23.21181 -21.93580 -21.31039 -20.09115 -19.67449 -18.96973 -18.06183 -17.59764 -17.06951 -16.20652 -16.14560 -15.80170 -15.47047 -15.00274 -14.52913 -14.22999 -13.82648 -13.64003 -13.50094 -13.18979 -13.16262 -12.98285 -12.87303 -12.64542 -12.55567 -12.19215 -12.08280 -11.90112 -11.24679 -10.94946 -10.64798 -10.26005 -10.23416 -10.19283 -10.17052 -9.95608 -9.86847 -9.80091 -9.38096 -9.37851 -9.13430 -8.16617 -8.10537 -7.95015 -6.79439 -6.03877 -3.03173 0.18352 0.91103 1.47443 1.53970 2.26308 2.72576 3.03468 3.41173 3.52987 3.58873 3.71608 3.75159 3.91189 4.68665 4.74191 4.84064 4.96886 5.10351 5.21691 5.29882 5.44808 5.59380 5.62349 5.65337 5.69634 5.76535 5.81350 5.91459 5.93004 6.19462 6.20678 6.31681 6.42741 6.52034 6.67643 6.82776 6.85200 6.97545 7.04015 7.25901 7.33953 7.47020 7.92437 8.17156 8.54228 8.66443 9.25789 9.97791 10.38350 11.24897 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009180 B = 0.005543 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.288189 B = 5049.989121 C = 6117.749698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.013 4.013 3 Si 1.038 2.962 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.293 1.293 7 C -0.359 4.359 8 H 0.053 0.947 9 N -0.595 5.595 10 C 0.165 3.835 11 C -0.169 4.169 12 C 0.130 3.870 13 N -0.562 5.562 14 C 0.593 3.407 15 O -0.549 6.549 16 C 0.030 3.970 17 C -0.219 4.219 18 S 0.207 5.793 19 C 0.105 3.895 20 C 0.056 3.944 21 C -0.173 4.173 22 C -0.218 4.218 23 C -0.010 4.010 24 O -0.142 6.142 25 N -0.402 5.402 26 C 0.069 3.931 27 C 0.152 3.848 28 H 0.267 0.733 29 H 0.045 0.955 30 H 0.030 0.970 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.194 0.806 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.209 0.791 39 H 0.118 0.882 40 H 0.050 0.950 41 H 0.026 0.974 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.234 -1.246 -15.734 16.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.216 4.216 3 Si 0.869 3.131 4 H -0.212 1.212 5 H -0.224 1.224 6 H -0.220 1.220 7 C -0.488 4.488 8 H 0.071 0.929 9 N -0.318 5.318 10 C 0.036 3.964 11 C -0.210 4.210 12 C 0.009 3.991 13 N -0.291 5.291 14 C 0.378 3.622 15 O -0.428 6.428 16 C -0.106 4.106 17 C -0.361 4.361 18 S 0.465 5.535 19 C -0.170 4.170 20 C 0.002 3.998 21 C -0.196 4.196 22 C -0.237 4.237 23 C -0.081 4.081 24 O -0.036 6.036 25 N -0.117 5.117 26 C -0.057 4.057 27 C 0.026 3.974 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.211 0.789 36 H 0.171 0.829 37 H 0.172 0.828 38 H 0.225 0.775 39 H 0.135 0.865 40 H 0.068 0.932 41 H 0.043 0.957 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.980 0.553 -16.015 16.511 hybrid contribution 0.656 -2.036 0.834 2.296 sum -3.324 -1.483 -15.180 15.611 Atomic orbital electron populations 1.70791 1.06852 1.29924 1.46095 1.25456 0.96029 1.00868 0.99279 0.83918 0.75532 0.77361 0.76338 1.21158 1.22420 1.21953 1.19803 1.04487 0.91869 1.32645 0.92947 1.43813 1.52266 1.01405 1.34310 1.20244 0.92373 0.87352 0.96421 1.21842 1.02291 1.01365 0.95503 1.20636 0.97043 0.88007 0.93458 1.47190 1.10006 1.30824 1.41111 1.17052 0.85924 0.79902 0.79338 1.90741 1.13091 1.70748 1.68265 1.20245 0.89131 1.01546 0.99667 1.26557 1.06648 1.00725 1.02165 1.83502 0.98388 1.35651 1.35943 1.24588 0.95165 0.98311 0.98903 1.18812 0.85709 0.98910 0.96378 1.21745 0.95180 1.00067 1.02611 1.21679 0.96609 1.03642 1.01739 1.24352 0.88991 0.95289 0.99448 1.84254 1.16689 1.51846 1.50772 1.67574 1.09898 1.13720 1.20528 1.22697 0.79952 0.99773 1.03251 1.21968 0.91327 0.98586 0.85488 0.92215 0.93692 0.95185 0.91137 0.92589 0.90389 0.91904 0.78900 0.82912 0.82791 0.77469 0.86527 0.93153 0.95665 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 12.62 55.49 0.70 -26.52 16 2 C -0.01 -0.37 4.35 -17.43 -0.08 -0.45 16 3 Si 1.04 26.72 30.04 -169.99 -5.11 21.61 16 4 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 5 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.36 -10.40 9.06 -15.06 -0.14 -10.54 16 8 H 0.05 1.57 8.03 -52.49 -0.42 1.15 16 9 N -0.60 -15.25 2.43 -171.78 -0.42 -15.66 16 10 C 0.16 3.57 5.63 -5.23 -0.03 3.54 16 11 C -0.17 -3.29 5.64 -29.13 -0.16 -3.45 16 12 C 0.13 2.33 5.68 -5.92 -0.03 2.30 16 13 N -0.56 -11.28 2.46 -177.75 -0.44 -11.71 16 14 C 0.59 12.37 7.64 -12.58 -0.10 12.27 16 15 O -0.55 -12.27 16.13 5.25 0.08 -12.18 16 16 C 0.03 0.56 6.46 -84.93 -0.55 0.01 16 17 C -0.22 -3.29 10.56 29.64 0.31 -2.97 16 18 S 0.21 2.50 22.93 -107.50 -2.46 0.04 16 19 C 0.10 1.66 7.46 -14.66 -0.11 1.55 16 20 C 0.06 0.84 7.24 -36.69 -0.27 0.57 16 21 C -0.17 -2.02 10.63 -39.35 -0.42 -2.44 16 22 C -0.22 -2.26 10.88 -39.83 -0.43 -2.69 16 23 C -0.01 -0.11 12.08 29.53 0.36 0.24 16 24 O -0.14 -2.25 10.67 4.55 0.05 -2.20 16 25 N -0.40 -7.46 5.63 -8.28 -0.05 -7.51 16 26 C 0.07 1.37 4.81 -4.40 -0.02 1.35 16 27 C 0.15 3.67 5.02 -1.56 -0.01 3.67 16 28 H 0.27 8.18 7.04 -40.82 -0.29 7.89 16 29 H 0.04 1.00 8.02 -51.93 -0.42 0.59 16 30 H 0.03 0.60 7.59 -51.93 -0.39 0.20 16 31 H 0.07 1.64 7.91 -51.93 -0.41 1.22 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.38 7.17 -51.93 -0.37 1.01 16 34 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 35 H 0.19 2.55 8.00 -52.49 -0.42 2.13 16 36 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 37 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.21 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.12 2.27 4.68 -60.54 -0.28 1.99 16 40 H 0.05 0.91 7.73 -51.93 -0.40 0.51 16 41 H 0.03 0.64 7.42 -51.93 -0.39 0.25 16 42 H 0.08 2.08 6.00 -51.93 -0.31 1.76 16 LS Contribution 357.29 15.07 5.38 5.38 Total: -1.00 -35.29 357.29 -8.93 -44.22 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -5.01 Total: 1.58 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -1.67 Total: 2.96 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: -0.20 Total: -61.40 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.13 Total: -14.38 kcal Atomic # 14 Polarization: 26.72 SS G_CDS: -5.11 Total: 21.61 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.46 Total: 0.04 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.29 -8.93 -44.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981840364.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.902 kcal (2) G-P(sol) polarization free energy of solvation -35.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds