Wall clock time and date at job start Wed Apr 1 2020 04:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99977 * 2 1 4 4 H 1.48501 * 109.47071 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47044 * 239.99471 * 3 2 1 6 6 H 1.48508 * 109.47206 * 119.99692 * 3 2 1 7 7 C 1.38816 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00031 * 215.12573 * 7 2 1 9 9 N 1.36939 * 119.99628 * 35.12701 * 7 2 1 10 10 C 1.43464 * 118.94095 * 202.53145 * 9 7 2 11 11 C 1.53797 * 107.96011 * 273.61298 * 10 9 7 12 12 C 1.47142 * 111.83961 * 281.66495 * 11 10 9 13 13 N 1.48208 * 110.34300 * 58.29847 * 12 11 10 14 14 C 1.34780 * 119.97125 * 102.46725 * 13 12 11 15 15 O 1.21632 * 119.99814 * 355.87563 * 14 13 12 16 16 C 1.47297 * 120.00048 * 175.87640 * 14 13 12 17 17 C 1.35171 * 122.41480 * 186.09146 * 16 14 13 18 18 S 1.71001 * 109.15741 * 179.86294 * 17 16 14 19 19 C 1.75995 * 90.59912 * 0.32655 * 18 17 16 20 20 C 1.47141 * 125.33067 * 179.82545 * 19 18 17 21 21 C 1.36233 * 125.95748 * 359.97438 * 20 19 18 22 22 C 1.40770 * 106.72282 * 179.97438 * 21 20 19 23 23 C 1.34834 * 107.07229 * 359.97438 * 22 21 20 24 24 O 1.34245 * 108.71944 * 359.75889 * 23 22 21 25 25 N 1.30122 * 109.33691 * 359.80893 * 19 18 17 26 26 C 1.43623 * 120.06249 * 282.49098 * 13 12 11 27 27 C 1.48864 * 118.94057 * 22.26738 * 9 7 2 28 28 H 0.97005 * 119.99880 * 185.81049 * 1 2 3 29 29 H 1.09004 * 109.76195 * 33.22584 * 10 9 7 30 30 H 1.09000 * 109.76375 * 153.94191 * 10 9 7 31 31 H 1.08999 * 109.00658 * 42.27032 * 11 10 9 32 32 H 1.08998 * 109.00475 * 161.13395 * 11 10 9 33 33 H 1.08999 * 109.32137 * 178.56691 * 12 11 10 34 34 H 1.09000 * 109.32567 * 298.20736 * 12 11 10 35 35 H 1.07995 * 125.42212 * 359.97438 * 17 16 14 36 36 H 1.08002 * 126.64220 * 359.94141 * 21 20 19 37 37 H 1.07997 * 126.46455 * 180.02562 * 22 21 20 38 38 H 1.07998 * 125.64128 * 180.02562 * 23 22 21 39 39 H 1.08998 * 108.87703 * 211.44587 * 26 13 12 40 40 H 1.09002 * 108.87143 * 329.88581 * 26 13 12 41 41 H 1.08999 * 109.47402 * 260.62591 * 27 9 7 42 42 H 1.08995 * 109.48030 * 20.65422 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1040 1.6963 -1.2124 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 2.9428 -1.2870 0.5387 9 7 1.5127 -2.2804 -0.6814 10 6 1.9335 -3.5977 -0.2997 11 6 3.2383 -3.9147 -1.0496 12 6 2.9868 -4.2979 -2.4478 13 7 2.2689 -3.2131 -3.1582 14 6 2.9395 -2.3988 -3.9970 15 8 4.1455 -2.5057 -4.1139 16 6 2.2119 -1.3793 -4.7723 17 6 2.8137 -0.6192 -5.7142 18 16 1.6610 0.4413 -6.4002 19 6 0.4092 -0.2089 -5.3478 20 6 -0.9956 0.2283 -5.3256 21 6 -1.5441 1.1980 -6.1096 22 6 -2.9037 1.2847 -5.7552 23 6 -3.1183 0.3745 -4.7838 24 8 -1.9657 -0.2654 -4.5307 25 7 0.9204 -1.1372 -4.5926 26 6 0.8594 -3.0286 -2.9532 27 6 0.5478 -2.0481 -1.7910 28 1 -0.4850 -0.8358 0.0851 29 1 2.1089 -3.6315 0.7756 30 1 1.1661 -4.3228 -0.5708 31 1 3.8802 -3.0339 -1.0329 32 1 3.7480 -4.7348 -0.5441 33 1 3.9373 -4.4881 -2.9462 34 1 2.3802 -5.2032 -2.4702 35 1 3.8562 -0.6741 -5.9908 36 1 -1.0344 1.7868 -6.8580 37 1 -3.6367 1.9534 -6.1815 38 1 -4.0624 0.1880 -4.2937 39 1 0.4175 -2.6401 -3.8707 40 1 0.4066 -3.9941 -2.7273 41 1 -0.4672 -2.2166 -1.4312 42 1 0.6422 -1.0219 -2.1459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981840364.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:34 Heat of formation + Delta-G solvation = 61.368099 kcal Electronic energy + Delta-G solvation = -29470.448717 eV Core-core repulsion = 25545.349739 eV Total energy + Delta-G solvation = -3925.098978 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.48763 -41.94331 -39.96993 -38.71085 -36.19428 -34.45451 -34.11068 -32.85758 -32.64894 -30.04813 -29.29101 -27.68678 -26.45282 -25.46882 -24.60823 -22.90713 -22.66254 -21.55823 -21.18321 -20.22484 -19.52306 -19.06465 -18.64379 -17.70072 -17.27234 -17.10702 -16.80041 -16.39740 -16.11997 -16.02184 -15.58553 -15.34065 -14.86221 -14.70304 -14.59364 -14.40284 -13.92516 -13.90696 -13.82148 -13.72089 -13.42291 -13.25373 -12.91570 -12.80450 -12.60402 -12.12127 -12.06402 -11.95985 -11.88345 -11.43422 -11.30078 -11.26645 -10.84079 -10.57299 -10.39521 -10.24976 -9.66503 -9.05619 -8.90408 -8.31199 -5.28190 -0.91770 -0.14178 0.33876 0.34852 1.22277 1.43392 1.49923 1.69353 1.73254 1.98706 2.13315 2.29598 2.57584 2.77869 3.10170 3.51147 3.66039 3.86878 4.01517 4.02890 4.07546 4.11677 4.15579 4.20928 4.38220 4.43459 4.49576 4.63329 4.74014 4.76927 4.90942 4.94275 5.02074 5.03619 5.11421 5.17849 5.30117 5.39784 5.53017 5.67995 5.86996 6.03234 6.26840 6.36244 6.43945 7.01420 7.10963 7.83870 8.23137 8.93668 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009180 B = 0.005543 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.288189 B = 5049.989121 C = 6117.749698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.057 4.057 3 Si 1.081 2.919 4 H -0.283 1.283 5 H -0.298 1.298 6 H -0.275 1.275 7 C -0.363 4.363 8 H 0.035 0.965 9 N -0.609 5.609 10 C 0.159 3.841 11 C -0.152 4.152 12 C 0.125 3.875 13 N -0.569 5.569 14 C 0.583 3.417 15 O -0.576 6.576 16 C -0.008 4.008 17 C -0.227 4.227 18 S 0.323 5.677 19 C 0.078 3.922 20 C 0.009 3.991 21 C -0.155 4.155 22 C -0.213 4.213 23 C -0.019 4.019 24 O -0.182 6.182 25 N -0.440 5.440 26 C 0.083 3.917 27 C 0.167 3.833 28 H 0.254 0.746 29 H 0.034 0.966 30 H 0.054 0.946 31 H 0.026 0.974 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.207 0.793 36 H 0.183 0.817 37 H 0.190 0.810 38 H 0.237 0.763 39 H 0.126 0.874 40 H 0.072 0.928 41 H 0.006 0.994 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.671 -0.516 -17.872 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.257 4.257 3 Si 0.908 3.092 4 H -0.209 1.209 5 H -0.226 1.226 6 H -0.201 1.201 7 C -0.493 4.493 8 H 0.053 0.947 9 N -0.333 5.333 10 C 0.032 3.968 11 C -0.193 4.193 12 C 0.004 3.996 13 N -0.297 5.297 14 C 0.369 3.631 15 O -0.457 6.457 16 C -0.144 4.144 17 C -0.369 4.369 18 S 0.582 5.418 19 C -0.195 4.195 20 C -0.044 4.044 21 C -0.177 4.177 22 C -0.232 4.232 23 C -0.089 4.089 24 O -0.078 6.078 25 N -0.157 5.157 26 C -0.042 4.042 27 C 0.041 3.959 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.224 0.776 36 H 0.200 0.800 37 H 0.207 0.793 38 H 0.253 0.747 39 H 0.143 0.857 40 H 0.090 0.910 41 H 0.024 0.976 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.412 1.260 -18.158 18.729 hybrid contribution 0.723 -2.201 1.432 2.723 sum -3.689 -0.941 -16.726 17.154 Atomic orbital electron populations 1.70888 1.07347 1.29024 1.48343 1.26505 0.96244 1.03522 0.99414 0.83311 0.74713 0.74409 0.76805 1.20850 1.22581 1.20077 1.19893 1.03525 0.93396 1.32487 0.94733 1.44013 1.52429 1.02104 1.34711 1.20427 0.94014 0.86192 0.96174 1.21630 1.00152 1.00714 0.96811 1.20814 0.97977 0.88731 0.92029 1.47338 1.09984 1.31185 1.41160 1.17525 0.85914 0.80206 0.79427 1.90695 1.14037 1.71709 1.69304 1.20083 0.89853 1.02907 1.01587 1.26935 1.08179 1.00582 1.01230 1.82955 0.94344 1.32204 1.32317 1.25033 0.96607 0.98345 0.99510 1.19164 0.85672 1.01135 0.98397 1.22212 0.95724 0.98293 1.01518 1.22136 0.96693 1.03427 1.00938 1.25177 0.88923 0.95035 0.99795 1.84219 1.18114 1.53399 1.52037 1.67417 1.10089 1.15795 1.22356 1.22480 0.80423 0.99522 1.01819 1.21709 0.89963 0.97959 0.86264 0.93627 0.94776 0.92806 0.95531 0.89011 0.90043 0.88281 0.77559 0.80015 0.79283 0.74672 0.85711 0.90963 0.97621 0.94155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.30 12.62 21.65 0.27 -57.02 16 2 C -0.06 -3.46 4.35 84.86 0.37 -3.09 16 3 Si 1.08 55.14 30.04 68.60 2.06 57.20 16 4 H -0.28 -14.20 7.11 99.48 0.71 -13.50 16 5 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 6 H -0.27 -13.12 7.11 99.48 0.71 -12.42 16 7 C -0.36 -21.74 9.06 84.03 0.76 -20.98 16 8 H 0.03 2.15 8.03 -2.91 -0.02 2.13 16 9 N -0.61 -32.09 2.43 -697.38 -1.69 -33.78 16 10 C 0.16 6.91 5.63 87.21 0.49 7.40 16 11 C -0.15 -5.85 5.64 29.04 0.16 -5.69 16 12 C 0.13 4.35 5.68 84.23 0.48 4.83 16 13 N -0.57 -22.90 2.46 -834.53 -2.05 -24.96 16 14 C 0.58 24.80 7.64 86.63 0.66 25.46 16 15 O -0.58 -26.22 16.13 -4.13 -0.07 -26.29 16 16 C -0.01 -0.32 6.46 40.70 0.26 -0.05 16 17 C -0.23 -6.63 10.56 67.11 0.71 -5.92 16 18 S 0.32 7.07 22.93 -56.49 -1.30 5.77 16 19 C 0.08 2.47 7.46 87.29 0.65 3.12 16 20 C 0.01 0.27 7.24 24.14 0.17 0.45 16 21 C -0.15 -3.24 10.63 22.42 0.24 -3.00 16 22 C -0.21 -3.85 10.88 22.11 0.24 -3.61 16 23 C -0.02 -0.42 12.08 67.04 0.81 0.39 16 24 O -0.18 -5.88 10.67 -6.64 -0.07 -5.95 16 25 N -0.44 -16.75 5.63 -180.10 -1.01 -17.76 16 26 C 0.08 3.35 4.81 87.67 0.42 3.77 16 27 C 0.17 8.36 5.02 86.68 0.43 8.79 16 28 H 0.25 16.21 7.04 -92.70 -0.65 15.56 16 29 H 0.03 1.53 8.02 -2.38 -0.02 1.51 16 30 H 0.05 2.08 7.59 -2.39 -0.02 2.06 16 31 H 0.03 1.24 7.91 -2.39 -0.02 1.22 16 32 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.08 2.81 7.17 -2.39 -0.02 2.79 16 34 H 0.10 2.75 8.05 -2.39 -0.02 2.73 16 35 H 0.21 5.24 8.00 -2.91 -0.02 5.22 16 36 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 37 H 0.19 1.97 8.06 -2.91 -0.02 1.94 16 38 H 0.24 3.27 8.06 -2.91 -0.02 3.25 16 39 H 0.13 5.00 4.68 -19.39 -0.09 4.91 16 40 H 0.07 2.55 7.73 -2.39 -0.02 2.53 16 41 H 0.01 0.31 7.42 -2.39 -0.02 0.30 16 42 H 0.04 2.31 6.00 -2.39 -0.01 2.29 16 Total: -1.00 -81.62 357.29 4.11 -77.51 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 1.10 Total: 13.42 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 6.87 Total: 11.86 kcal Atomic # 7 Polarization: -129.04 SS G_CDS: -4.49 Total: -133.53 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -0.14 Total: -32.24 kcal Atomic # 14 Polarization: 55.14 SS G_CDS: 2.06 Total: 57.20 kcal Atomic # 16 Polarization: 7.07 SS G_CDS: -1.30 Total: 5.77 kcal Total: -81.62 4.11 -77.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981840364.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.877 kcal (2) G-P(sol) polarization free energy of solvation -81.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds