Wall clock time and date at job start Wed Apr 1 2020 04:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00071 * 2 1 4 4 H 1.48499 * 109.47206 * 270.00107 * 3 2 1 5 5 H 1.48503 * 109.47144 * 29.99725 * 3 2 1 6 6 H 1.48501 * 109.47239 * 150.00204 * 3 2 1 7 7 C 1.38810 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00233 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99807 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99899 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.50222 * 325.00028 * 10 9 7 12 12 C 1.53040 * 109.52342 * 204.92282 * 10 9 7 13 13 C 1.53044 * 109.53881 * 178.67420 * 12 10 9 14 14 C 1.53182 * 109.31450 * 61.35958 * 13 12 10 15 15 N 1.46923 * 108.77781 * 305.36665 * 14 13 12 16 16 C 1.34776 * 120.63196 * 233.62829 * 15 14 13 17 17 O 1.21713 * 119.99908 * 174.90324 * 16 15 14 18 18 C 1.46773 * 120.00133 * 354.90671 * 16 15 14 19 19 N 1.35990 * 126.65541 * 283.76619 * 18 16 15 20 20 C 1.29862 * 108.79699 * 179.86227 * 19 18 16 21 21 O 1.34152 * 109.90024 * 0.41399 * 20 19 18 22 22 C 1.34896 * 108.24510 * 359.74101 * 21 20 19 23 23 C 1.46608 * 126.81311 * 180.02562 * 22 21 20 24 24 C 1.36450 * 125.34259 * 4.66285 * 23 22 21 25 25 C 1.37573 * 114.41791 * 179.79067 * 24 23 22 26 26 C 1.33836 * 115.21812 * 0.50656 * 25 24 23 27 27 S 1.75825 * 109.97439 * 359.72427 * 26 25 24 28 28 C 1.46924 * 118.73948 * 53.60997 * 15 14 13 29 29 H 0.97002 * 119.99989 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00001 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.45952 * 298.68620 * 12 10 9 32 32 H 1.09002 * 109.46357 * 58.64836 * 12 10 9 33 33 H 1.09008 * 109.49013 * 301.40801 * 13 12 10 34 34 H 1.08998 * 109.52469 * 181.33282 * 13 12 10 35 35 H 1.09008 * 109.58837 * 185.58203 * 14 13 12 36 36 H 1.09000 * 109.58895 * 65.15609 * 14 13 12 37 37 H 1.08001 * 125.04797 * 180.19580 * 20 19 18 38 38 H 1.07997 * 122.79046 * 359.97438 * 24 23 22 39 39 H 1.08004 * 122.39609 * 180.21251 * 25 24 23 40 40 H 1.07996 * 125.01614 * 179.75636 * 26 25 24 41 41 H 1.08997 * 109.59163 * 186.60032 * 28 15 14 42 42 H 1.09007 * 109.58635 * 66.17473 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4709 0.0011 11 1 3.5653 -3.2062 0.5915 12 6 5.5008 -2.2592 0.6082 13 6 6.2541 -3.5910 0.6399 14 6 6.4258 -4.1101 -0.7910 15 7 5.1051 -4.1790 -1.4309 16 6 4.6770 -5.3227 -2.0010 17 8 3.5462 -5.3951 -2.4454 18 6 5.5744 -6.4811 -2.0859 19 7 6.6060 -6.6468 -2.9563 20 6 7.1682 -7.7944 -2.7253 21 8 6.5352 -8.4190 -1.7208 22 6 5.5309 -7.6249 -1.2959 23 6 4.5821 -7.9107 -0.2154 24 6 4.6216 -9.0031 0.6013 25 6 3.6212 -9.0444 1.5448 26 6 2.7621 -8.0187 1.5101 27 16 3.2099 -6.9033 0.2268 28 6 4.2596 -2.9774 -1.4371 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3621 -0.0004 31 1 6.0561 -1.5424 0.0032 32 1 5.3988 -1.8754 1.6233 33 1 5.6870 -4.3158 1.2243 34 1 7.2341 -3.4446 1.0939 35 1 6.8729 -5.1041 -0.7680 36 1 7.0684 -3.4311 -1.3515 37 1 8.0168 -8.1890 -3.2643 38 1 5.3772 -9.7701 0.5161 39 1 3.5325 -9.8494 2.2593 40 1 1.9186 -7.8942 2.1729 41 1 3.2773 -3.2237 -1.8403 42 1 4.7255 -2.2059 -2.0502 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000480372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:33 Heat of formation + Delta-G solvation = 49.519945 kcal Electronic energy + Delta-G solvation = -28442.575301 eV Core-core repulsion = 24516.962548 eV Total energy + Delta-G solvation = -3925.612752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.49705 -39.88316 -37.86812 -37.41588 -35.10596 -34.54658 -32.40081 -32.07914 -31.34252 -29.12048 -28.32375 -25.87152 -24.71982 -23.98369 -23.34019 -22.44278 -21.74972 -20.58245 -19.56239 -19.31592 -18.21207 -17.58730 -17.50597 -16.99893 -16.26530 -15.96974 -15.55427 -15.16840 -14.69929 -14.47678 -14.29022 -14.12209 -13.78797 -13.42985 -13.32066 -13.15569 -12.93067 -12.70573 -12.59608 -12.45574 -12.40858 -11.83772 -11.53057 -11.23090 -11.05781 -10.94025 -10.83539 -10.71860 -10.64873 -10.30243 -10.20912 -9.96287 -9.90220 -9.59403 -9.13646 -8.71025 -8.42837 -8.25914 -7.31231 -5.78004 -3.15517 0.03734 1.12771 1.47007 1.76904 2.09296 2.44355 2.48344 2.61925 3.04810 3.36351 3.39087 3.44838 3.88841 4.28083 4.44044 4.57423 4.79534 4.84438 4.98254 5.07400 5.11717 5.17379 5.26653 5.34994 5.37126 5.42889 5.52351 5.68645 5.74755 5.75248 5.80423 5.88428 6.00455 6.01005 6.06302 6.12914 6.22573 6.35548 6.59290 6.68715 6.86348 7.22649 7.46878 7.97372 8.15988 8.40616 9.17678 9.89427 10.07753 11.39930 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013632 B = 0.003612 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.521071 B = 7750.156029 C = 8734.703407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.092 0.908 9 N -0.742 5.742 10 C 0.173 3.827 11 H 0.062 0.938 12 C -0.129 4.129 13 C -0.130 4.130 14 C 0.112 3.888 15 N -0.588 5.588 16 C 0.593 3.407 17 O -0.512 6.512 18 C -0.038 4.038 19 N -0.450 5.450 20 C 0.176 3.824 21 O -0.190 6.190 22 C 0.084 3.916 23 C -0.166 4.166 24 C -0.100 4.100 25 C -0.145 4.145 26 C -0.216 4.216 27 S 0.236 5.764 28 C 0.092 3.908 29 H 0.260 0.740 30 H 0.363 0.637 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.258 0.742 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.172 0.828 41 H 0.099 0.901 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.418 -19.148 1.860 25.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.188 4.188 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.110 0.890 9 N -0.384 5.384 10 C 0.063 3.937 11 H 0.080 0.920 12 C -0.168 4.168 13 C -0.168 4.168 14 C -0.011 4.011 15 N -0.321 5.321 16 C 0.377 3.623 17 O -0.386 6.386 18 C -0.162 4.162 19 N -0.178 5.178 20 C -0.051 4.051 21 O -0.077 6.077 22 C 0.028 3.972 23 C -0.284 4.284 24 C -0.133 4.133 25 C -0.175 4.175 26 C -0.353 4.353 27 S 0.504 5.496 28 C -0.032 4.032 29 H 0.070 0.930 30 H 0.196 0.804 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.273 0.727 38 H 0.162 0.838 39 H 0.163 0.837 40 H 0.190 0.810 41 H 0.117 0.883 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 16.079 -17.422 0.657 23.717 hybrid contribution 1.200 -0.692 0.780 1.590 sum 17.279 -18.114 1.437 25.075 Atomic orbital electron populations 1.69703 1.05123 1.25864 1.57055 1.24668 0.95196 0.97162 1.01739 0.86579 0.79219 0.85066 0.77825 1.21021 1.21726 1.20284 1.19094 0.80329 0.94871 1.43510 0.88985 1.42726 1.04161 1.01680 1.89809 1.20458 0.91024 0.89577 0.92669 0.92046 1.21872 0.96673 0.96326 1.01912 1.21887 1.00945 0.98222 0.95783 1.21683 0.84135 1.01539 0.93716 1.48094 1.18094 1.10948 1.54942 1.16695 0.85555 0.81181 0.78877 1.90904 1.18512 1.81967 1.47260 1.22006 0.99222 0.97261 0.97711 1.70739 1.06814 1.17518 1.22737 1.28064 0.99427 0.88691 0.88937 1.84441 1.36111 1.44007 1.43162 1.20360 0.90580 0.89438 0.96852 1.21933 1.01815 1.03422 1.01183 1.20636 1.00289 0.97313 0.95017 1.19942 0.95761 1.00452 1.01319 1.26294 1.05256 0.99699 1.04039 1.85492 1.17899 1.21016 1.25186 1.22833 0.95650 0.83751 1.00966 0.92999 0.80417 0.92008 0.91167 0.91362 0.90782 0.90971 0.91003 0.72688 0.83798 0.83746 0.81008 0.88297 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.06 13.97 55.49 0.78 -28.29 16 2 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 3 Si 0.88 21.75 27.73 -169.99 -4.71 17.04 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 7 C -0.25 -6.89 10.41 -15.06 -0.16 -7.04 16 8 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 9 N -0.74 -16.99 4.93 -53.31 -0.26 -17.26 16 10 C 0.17 3.24 2.92 -67.81 -0.20 3.04 16 11 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 12 C -0.13 -1.88 5.36 -26.69 -0.14 -2.02 16 13 C -0.13 -1.52 6.08 -26.61 -0.16 -1.69 16 14 C 0.11 1.41 6.32 -3.72 -0.02 1.38 16 15 N -0.59 -9.39 2.97 -174.27 -0.52 -9.91 16 16 C 0.59 10.34 5.87 -12.81 -0.08 10.27 16 17 O -0.51 -10.65 15.80 5.18 0.08 -10.57 16 18 C -0.04 -0.57 4.87 -82.26 -0.40 -0.97 16 19 N -0.45 -5.89 11.33 -10.98 -0.12 -6.01 16 20 C 0.18 1.55 13.15 51.93 0.68 2.24 16 21 O -0.19 -2.02 10.75 4.47 0.05 -1.97 16 22 C 0.08 1.12 7.27 -35.89 -0.26 0.86 16 23 C -0.17 -2.12 6.44 -36.85 -0.24 -2.36 16 24 C -0.10 -1.03 10.17 -40.47 -0.41 -1.44 16 25 C -0.15 -1.35 10.14 -41.37 -0.42 -1.77 16 26 C -0.22 -2.27 11.22 29.19 0.33 -1.94 16 27 S 0.24 3.27 20.82 -107.50 -2.24 1.03 16 28 C 0.09 1.69 6.02 -3.71 -0.02 1.67 16 29 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 30 H 0.36 8.10 5.66 -40.82 -0.23 7.87 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.85 6.38 -51.92 -0.33 0.52 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.26 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 40 H 0.17 1.43 8.06 -52.49 -0.42 1.00 16 41 H 0.10 2.14 6.99 -51.93 -0.36 1.78 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 365.35 15.07 5.51 5.51 Total: -1.00 -35.10 365.35 -8.21 -43.31 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.16 Total: 6.74 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.60 Total: 0.38 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: -0.13 Total: -61.46 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.13 Total: -12.54 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.04 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -2.24 Total: 1.03 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.10 -8.21 -43.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000480372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.832 kcal (2) G-P(sol) polarization free energy of solvation -35.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds