Wall clock time and date at job start Wed Apr 1 2020 04:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00071 * 2 1 4 4 H 1.48499 * 109.47206 * 270.00107 * 3 2 1 5 5 H 1.48503 * 109.47144 * 29.99725 * 3 2 1 6 6 H 1.48501 * 109.47239 * 150.00204 * 3 2 1 7 7 C 1.38810 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00233 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99807 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99899 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.50222 * 325.00028 * 10 9 7 12 12 C 1.53040 * 109.52342 * 204.92282 * 10 9 7 13 13 C 1.53044 * 109.53881 * 178.67420 * 12 10 9 14 14 C 1.53182 * 109.31450 * 61.35958 * 13 12 10 15 15 N 1.46923 * 108.77781 * 305.36665 * 14 13 12 16 16 C 1.34776 * 120.63196 * 233.62829 * 15 14 13 17 17 O 1.21713 * 119.99908 * 174.90324 * 16 15 14 18 18 C 1.46773 * 120.00133 * 354.90671 * 16 15 14 19 19 N 1.35990 * 126.65541 * 283.76619 * 18 16 15 20 20 C 1.29862 * 108.79699 * 179.86227 * 19 18 16 21 21 O 1.34152 * 109.90024 * 0.41399 * 20 19 18 22 22 C 1.34896 * 108.24510 * 359.74101 * 21 20 19 23 23 C 1.46608 * 126.81311 * 180.02562 * 22 21 20 24 24 C 1.36450 * 125.34259 * 4.66285 * 23 22 21 25 25 C 1.37573 * 114.41791 * 179.79067 * 24 23 22 26 26 C 1.33836 * 115.21812 * 0.50656 * 25 24 23 27 27 S 1.75825 * 109.97439 * 359.72427 * 26 25 24 28 28 C 1.46924 * 118.73948 * 53.60997 * 15 14 13 29 29 H 0.97002 * 119.99989 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00001 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.45952 * 298.68620 * 12 10 9 32 32 H 1.09002 * 109.46357 * 58.64836 * 12 10 9 33 33 H 1.09008 * 109.49013 * 301.40801 * 13 12 10 34 34 H 1.08998 * 109.52469 * 181.33282 * 13 12 10 35 35 H 1.09008 * 109.58837 * 185.58203 * 14 13 12 36 36 H 1.09000 * 109.58895 * 65.15609 * 14 13 12 37 37 H 1.08001 * 125.04797 * 180.19580 * 20 19 18 38 38 H 1.07997 * 122.79046 * 359.97438 * 24 23 22 39 39 H 1.08004 * 122.39609 * 180.21251 * 25 24 23 40 40 H 1.07996 * 125.01614 * 179.75636 * 26 25 24 41 41 H 1.08997 * 109.59163 * 186.60032 * 28 15 14 42 42 H 1.09007 * 109.58635 * 66.17473 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4709 0.0011 11 1 3.5653 -3.2062 0.5915 12 6 5.5008 -2.2592 0.6082 13 6 6.2541 -3.5910 0.6399 14 6 6.4258 -4.1101 -0.7910 15 7 5.1051 -4.1790 -1.4309 16 6 4.6770 -5.3227 -2.0010 17 8 3.5462 -5.3951 -2.4454 18 6 5.5744 -6.4811 -2.0859 19 7 6.6060 -6.6468 -2.9563 20 6 7.1682 -7.7944 -2.7253 21 8 6.5352 -8.4190 -1.7208 22 6 5.5309 -7.6249 -1.2959 23 6 4.5821 -7.9107 -0.2154 24 6 4.6216 -9.0031 0.6013 25 6 3.6212 -9.0444 1.5448 26 6 2.7621 -8.0187 1.5101 27 16 3.2099 -6.9033 0.2268 28 6 4.2596 -2.9774 -1.4371 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3621 -0.0004 31 1 6.0561 -1.5424 0.0032 32 1 5.3988 -1.8754 1.6233 33 1 5.6870 -4.3158 1.2243 34 1 7.2341 -3.4446 1.0939 35 1 6.8729 -5.1041 -0.7680 36 1 7.0684 -3.4311 -1.3515 37 1 8.0168 -8.1890 -3.2643 38 1 5.3772 -9.7701 0.5161 39 1 3.5325 -9.8494 2.2593 40 1 1.9186 -7.8942 2.1729 41 1 3.2773 -3.2237 -1.8403 42 1 4.7255 -2.2059 -2.0502 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000480372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:32 Heat of formation + Delta-G solvation = 22.488199 kcal Electronic energy + Delta-G solvation = -28443.747485 eV Core-core repulsion = 24516.962548 eV Total energy + Delta-G solvation = -3926.784937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.36997 -41.19616 -38.83185 -38.69410 -36.41590 -35.89944 -34.01550 -33.02165 -32.99226 -30.68418 -29.36153 -27.07757 -25.74631 -25.54570 -24.50040 -23.31750 -23.19435 -21.96936 -20.74467 -20.18510 -19.58697 -19.20671 -18.61517 -17.94401 -17.38700 -16.97104 -16.70127 -16.58698 -16.23422 -15.82212 -15.57871 -15.16220 -15.14062 -14.87856 -14.50285 -14.25805 -14.18390 -14.02346 -13.89054 -13.68465 -13.42439 -13.26028 -12.98523 -12.63290 -12.57542 -12.10883 -11.99520 -11.98266 -11.90117 -11.81185 -11.69253 -11.41547 -11.40084 -11.10080 -11.00026 -9.95287 -9.67830 -9.29297 -9.16377 -8.03226 -5.39527 -0.85036 0.21103 0.60793 0.87218 1.14961 1.35962 1.38005 1.42903 1.49520 1.53467 1.75066 1.92958 2.48171 3.02345 3.27507 3.33908 3.47570 3.56791 3.90819 3.96459 3.98980 4.07643 4.18187 4.24109 4.25773 4.31325 4.48697 4.50332 4.57675 4.61794 4.80853 4.83204 4.95236 4.96957 5.05207 5.08109 5.16833 5.30558 5.35878 5.38772 5.40376 5.75569 6.18493 6.20845 6.37692 6.85994 7.05624 7.77667 8.00100 9.18459 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013632 B = 0.003612 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.521071 B = 7750.156029 C = 8734.703407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.062 4.062 3 Si 0.959 3.041 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.243 1.243 7 C -0.236 4.236 8 H 0.047 0.953 9 N -0.742 5.742 10 C 0.173 3.827 11 H 0.036 0.964 12 C -0.120 4.120 13 C -0.120 4.120 14 C 0.110 3.890 15 N -0.585 5.585 16 C 0.591 3.409 17 O -0.564 6.564 18 C -0.066 4.066 19 N -0.487 5.487 20 C 0.212 3.788 21 O -0.182 6.182 22 C 0.085 3.915 23 C -0.180 4.180 24 C -0.079 4.079 25 C -0.136 4.136 26 C -0.203 4.203 27 S 0.124 5.876 28 C 0.104 3.896 29 H 0.258 0.742 30 H 0.371 0.629 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.115 0.885 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.316 0.684 38 H 0.175 0.825 39 H 0.185 0.815 40 H 0.191 0.809 41 H 0.051 0.949 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.271 -20.762 3.008 30.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.253 4.253 3 Si 0.785 3.215 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.167 1.167 7 C -0.367 4.367 8 H 0.065 0.935 9 N -0.385 5.385 10 C 0.063 3.937 11 H 0.054 0.946 12 C -0.158 4.158 13 C -0.158 4.158 14 C -0.011 4.011 15 N -0.317 5.317 16 C 0.377 3.623 17 O -0.443 6.443 18 C -0.187 4.187 19 N -0.215 5.215 20 C -0.015 4.015 21 O -0.070 6.070 22 C 0.028 3.972 23 C -0.297 4.297 24 C -0.112 4.112 25 C -0.164 4.164 26 C -0.339 4.339 27 S 0.391 5.609 28 C -0.020 4.020 29 H 0.067 0.933 30 H 0.205 0.795 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.133 0.867 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.331 0.669 38 H 0.193 0.807 39 H 0.202 0.798 40 H 0.208 0.792 41 H 0.069 0.931 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 21.025 -19.060 1.818 28.437 hybrid contribution -0.291 -0.462 0.423 0.691 sum 20.734 -19.522 2.241 28.567 Atomic orbital electron populations 1.69910 1.07409 1.26811 1.59308 1.25563 0.96114 1.01497 1.02146 0.85359 0.78937 0.79044 0.78121 1.20578 1.22234 1.16663 1.18957 0.82595 0.93215 1.41898 0.93489 1.42638 1.02409 1.03605 1.89871 1.20591 0.93175 0.87231 0.92675 0.94609 1.21794 0.93687 0.98501 1.01855 1.21866 1.02423 0.96145 0.95363 1.21958 0.82283 1.02846 0.94046 1.48107 1.18981 1.09780 1.54833 1.17108 0.85291 0.82043 0.77847 1.90859 1.20903 1.82993 1.49497 1.21561 1.00330 0.97058 0.99794 1.70702 1.07349 1.20023 1.23451 1.29386 0.98532 0.86804 0.86818 1.84478 1.35452 1.43409 1.43614 1.20310 0.91077 0.89105 0.96749 1.21890 1.01427 1.03958 1.02459 1.21096 1.00306 0.96360 0.93398 1.20397 0.94365 1.00502 1.01176 1.26499 1.06110 0.98707 1.02602 1.85950 1.21267 1.24790 1.28890 1.22362 0.94171 0.85084 1.00426 0.93282 0.79501 0.90231 0.90715 0.92234 0.86655 0.89805 0.89143 0.66936 0.80744 0.79807 0.79212 0.93059 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.66 13.97 21.65 0.30 -64.36 16 2 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 3 Si 0.96 45.46 27.73 68.60 1.90 47.36 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.24 -10.04 6.52 99.48 0.65 -9.39 16 7 C -0.24 -13.82 10.41 84.03 0.88 -12.94 16 8 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 9 N -0.74 -34.75 4.93 -322.57 -1.59 -36.34 16 10 C 0.17 6.69 2.92 45.07 0.13 6.82 16 11 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 12 C -0.12 -3.27 5.36 30.62 0.16 -3.11 16 13 C -0.12 -2.53 6.08 30.67 0.19 -2.34 16 14 C 0.11 2.58 6.32 86.36 0.55 3.13 16 15 N -0.59 -19.42 2.97 -823.49 -2.45 -21.87 16 16 C 0.59 21.96 5.87 86.47 0.51 22.47 16 17 O -0.56 -26.02 15.80 -4.39 -0.07 -26.08 16 18 C -0.07 -1.98 4.87 40.93 0.20 -1.78 16 19 N -0.49 -11.98 11.33 -303.54 -3.44 -15.42 16 20 C 0.21 2.96 13.15 130.53 1.72 4.68 16 21 O -0.18 -3.30 10.75 -6.93 -0.07 -3.37 16 22 C 0.08 2.18 7.27 24.66 0.18 2.36 16 23 C -0.18 -4.55 6.44 24.04 0.15 -4.39 16 24 C -0.08 -1.41 10.17 21.69 0.22 -1.19 16 25 C -0.14 -2.14 10.14 21.11 0.21 -1.93 16 26 C -0.20 -4.16 11.22 66.82 0.75 -3.41 16 27 S 0.12 3.72 20.82 -56.49 -1.18 2.54 16 28 C 0.10 4.09 6.02 86.36 0.52 4.61 16 29 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 30 H 0.37 16.12 5.66 -92.71 -0.52 15.59 16 31 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.82 6.38 -2.38 -0.02 1.81 16 36 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.32 -0.05 8.06 -2.91 -0.02 -0.08 16 38 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 39 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.19 3.05 8.06 -2.91 -0.02 3.02 16 41 H 0.05 2.48 6.99 -2.39 -0.02 2.46 16 42 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 Total: -1.00 -86.06 365.35 0.72 -85.34 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.48 Total: 22.47 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 6.83 Total: 9.73 kcal Atomic # 7 Polarization: -130.82 SS G_CDS: -7.17 Total: -137.99 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.14 Total: -29.46 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.90 Total: 47.36 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.18 Total: 2.54 kcal Total: -86.06 0.72 -85.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000480372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.831 kcal (2) G-P(sol) polarization free energy of solvation -86.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds