Wall clock time and date at job start Wed Apr 1 2020 04:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48500 * 109.47183 * 272.94605 * 3 2 1 5 5 H 1.48496 * 109.47289 * 32.94829 * 3 2 1 6 6 H 1.48510 * 109.47005 * 152.94500 * 3 2 1 7 7 C 1.38815 * 119.99908 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99570 * 339.34181 * 7 2 1 9 9 N 1.36936 * 120.00168 * 159.34094 * 7 2 1 10 10 C 1.46919 * 120.63311 * 332.63002 * 9 7 2 11 11 C 1.53192 * 108.77865 * 233.58778 * 10 9 7 12 12 C 1.53040 * 109.30825 * 305.36636 * 11 10 9 13 13 N 1.46509 * 109.45593 * 181.38680 * 12 11 10 14 14 C 1.34774 * 119.99641 * 154.99984 * 13 12 11 15 15 O 1.21722 * 120.00607 * 359.97438 * 14 13 12 16 16 C 1.46437 * 119.99635 * 179.97438 * 14 13 12 17 17 C 1.36860 * 126.11054 * 179.97438 * 16 14 13 18 18 N 1.30660 * 114.04559 * 179.76170 * 17 16 14 19 19 C 1.30437 * 117.27190 * 0.51343 * 18 17 16 20 20 C 1.47640 * 124.75403 * 179.76557 * 19 18 17 21 21 C 1.46926 * 127.16572 * 359.93716 * 20 19 18 22 22 C 1.34249 * 105.99738 * 180.14052 * 21 20 19 23 23 O 1.34192 * 109.09206 * 359.63531 * 22 21 20 24 24 C 1.33919 * 110.83637 * 0.24368 * 23 22 21 25 25 S 1.70920 * 110.48676 * 359.50129 * 19 18 17 26 26 C 1.53036 * 109.54254 * 61.36526 * 12 11 10 27 27 C 1.46929 * 120.62717 * 152.60786 * 9 7 2 28 28 H 0.97003 * 119.99846 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.58849 * 113.79573 * 10 9 7 30 30 H 1.09008 * 109.70322 * 353.44370 * 10 9 7 31 31 H 1.08994 * 109.49855 * 185.41105 * 11 10 9 32 32 H 1.09002 * 109.49548 * 65.31375 * 11 10 9 33 33 H 1.09002 * 109.45604 * 301.35157 * 12 11 10 34 34 H 0.96998 * 120.00057 * 334.99254 * 13 12 11 35 35 H 1.07997 * 122.97611 * 0.04479 * 17 16 14 36 36 H 1.08000 * 126.99920 * 0.02562 * 21 20 19 37 37 H 1.07994 * 125.45948 * 179.89655 * 22 21 20 38 38 H 1.08001 * 125.79672 * 180.02562 * 24 23 22 39 39 H 1.08998 * 109.49927 * 58.58210 * 26 12 11 40 40 H 1.08998 * 109.49616 * 178.68446 * 26 12 11 41 41 H 1.09003 * 109.58464 * 246.19518 * 27 9 7 42 42 H 1.08993 * 109.58903 * 6.48294 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4354 2.0823 -1.3982 5 1 1.4803 2.6338 0.7614 6 1 3.5776 1.4228 0.6369 7 6 2.0102 -1.2022 -0.0005 8 1 1.5222 -2.1076 0.3291 9 7 3.3135 -1.2402 -0.4189 10 6 3.8173 -0.2585 -1.3891 11 6 4.4621 -1.0079 -2.5593 12 6 5.5287 -1.9645 -2.0215 13 7 6.1705 -2.6588 -3.1407 14 6 7.4209 -3.1432 -3.0052 15 8 8.0172 -3.0035 -1.9532 16 6 8.0622 -3.8376 -4.1236 17 6 9.3205 -4.3759 -4.1240 18 7 9.6547 -4.9476 -5.2503 19 6 8.7765 -4.9272 -6.2145 20 6 8.9817 -5.5168 -7.5524 21 6 10.1780 -6.2167 -8.0400 22 6 9.9090 -6.5708 -9.3067 23 8 8.6711 -6.1610 -9.6235 24 6 8.0994 -5.5293 -8.5903 25 16 7.3521 -4.1288 -5.7095 26 6 4.8751 -2.9901 -1.0927 27 6 4.2349 -2.2632 0.0942 28 1 -0.4850 0.8401 0.0004 29 1 4.5596 0.3802 -0.9107 30 1 2.9922 0.3520 -1.7563 31 1 4.9245 -0.2923 -3.2390 32 1 3.6994 -1.5759 -3.0921 33 1 6.2778 -1.3986 -1.4676 34 1 5.6955 -2.7699 -3.9790 35 1 9.9772 -4.3358 -3.2676 36 1 11.0890 -6.4060 -7.4916 37 1 10.5797 -7.1041 -9.9640 38 1 7.1073 -5.1027 -8.5814 39 1 4.1085 -3.5394 -1.6392 40 1 5.6315 -3.6852 -0.7285 41 1 5.0115 -1.7879 0.6935 42 1 3.6844 -2.9759 0.7082 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003749646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:27 Heat of formation + Delta-G solvation = 53.116908 kcal Electronic energy + Delta-G solvation = -26657.755319 eV Core-core repulsion = 22732.298543 eV Total energy + Delta-G solvation = -3925.456776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.96015 -40.35236 -39.42103 -37.62472 -34.68552 -33.97078 -32.32760 -31.14303 -30.52767 -30.37506 -29.46602 -26.55300 -24.99479 -23.16082 -22.77503 -22.10665 -21.83349 -21.19659 -20.08616 -19.59353 -18.91409 -17.67150 -17.15789 -16.58351 -16.52998 -16.19439 -15.59379 -15.41924 -15.14247 -14.73699 -14.38761 -14.19912 -14.08580 -13.83090 -13.73625 -13.37641 -13.14559 -12.98645 -12.85199 -12.44144 -12.09470 -11.93832 -11.83122 -11.07536 -10.87279 -10.85510 -10.61915 -10.43917 -10.33763 -10.20079 -10.01306 -9.87178 -9.77793 -9.58745 -9.50134 -8.99489 -8.70377 -8.66351 -7.02720 -5.97639 -3.33749 -0.36085 0.68802 1.13748 1.20740 1.75940 2.44585 2.52523 3.01309 3.05529 3.28653 3.47204 3.50122 3.51732 4.11106 4.45045 4.50119 4.53858 4.66651 4.88135 4.91758 5.02353 5.12833 5.21735 5.27397 5.34718 5.41669 5.59613 5.72552 5.76482 5.79792 5.97590 5.98943 6.11216 6.25702 6.33660 6.46826 6.53295 6.57918 6.60605 6.63831 6.86970 7.20735 7.39979 7.92800 8.04323 8.30141 8.90668 9.68861 10.06132 11.18229 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.023932 B = 0.002083 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.711864 B =13440.418567 C =14024.627312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.881 3.119 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.260 4.260 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.130 3.870 11 C -0.141 4.141 12 C 0.151 3.849 13 N -0.717 5.717 14 C 0.594 3.406 15 O -0.524 6.524 16 C -0.294 4.294 17 C 0.128 3.872 18 N -0.472 5.472 19 C 0.123 3.877 20 C -0.137 4.137 21 C -0.169 4.169 22 C -0.036 4.036 23 O -0.171 6.171 24 C 0.012 3.988 25 S 0.185 5.815 26 C -0.142 4.142 27 C 0.151 3.849 28 H 0.263 0.737 29 H 0.028 0.972 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.394 0.606 35 H 0.193 0.807 36 H 0.161 0.839 37 H 0.210 0.790 38 H 0.211 0.789 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.026 0.974 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.029 -11.881 -20.250 30.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.388 4.388 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.181 4.181 12 C 0.048 3.952 13 N -0.367 5.367 14 C 0.379 3.621 15 O -0.402 6.402 16 C -0.419 4.419 17 C -0.032 4.032 18 N -0.187 5.187 19 C -0.148 4.148 20 C -0.142 4.142 21 C -0.191 4.191 22 C -0.102 4.102 23 O -0.066 6.066 24 C -0.061 4.061 25 S 0.445 5.555 26 C -0.182 4.182 27 C 0.024 3.976 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.228 0.772 35 H 0.210 0.790 36 H 0.178 0.822 37 H 0.227 0.773 38 H 0.228 0.772 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 18.644 -11.740 -20.291 29.952 hybrid contribution 0.921 0.965 0.517 1.430 sum 19.565 -10.776 -19.774 29.831 Atomic orbital electron populations 1.69836 1.05716 1.26565 1.52926 1.25292 0.95249 0.97578 0.99516 0.86977 0.80155 0.84696 0.77008 1.21644 1.23075 1.19471 1.18925 0.84887 0.94801 1.40160 0.89611 1.44403 1.08736 1.33305 1.46507 1.21304 0.97343 0.92039 0.88996 1.22368 0.97416 0.98407 0.99937 1.21092 0.94481 0.93182 0.86443 1.46221 1.14892 1.58193 1.17386 1.16634 0.81477 0.78333 0.85679 1.90862 1.63996 1.57918 1.27427 1.26164 1.01232 1.15275 0.99229 1.22457 0.93046 0.92147 0.95523 1.66424 1.32209 1.20090 0.99948 1.24315 0.93709 1.00529 0.96222 1.19211 0.96918 1.07061 0.91002 1.22834 0.99301 1.01948 0.94992 1.24009 0.85077 1.03724 0.97390 1.83896 1.26977 1.57468 1.38210 1.24220 0.98755 0.98288 0.84859 1.83668 1.17041 1.49280 1.05532 1.22398 0.99475 0.97965 0.98382 1.20898 0.92370 0.91374 0.92924 0.92751 0.95386 0.90406 0.92129 0.91034 0.89482 0.77211 0.79040 0.82162 0.77299 0.77203 0.91720 0.92107 0.95592 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.45 13.97 55.49 0.78 -26.67 16 2 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 3 Si 0.88 22.04 24.34 -169.99 -4.14 17.90 16 4 H -0.29 -6.89 6.62 56.52 0.37 -6.52 16 5 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 6 H -0.27 -6.67 6.64 56.52 0.38 -6.30 16 7 C -0.26 -7.13 10.03 -15.06 -0.15 -7.28 16 8 H 0.09 2.52 8.06 -52.48 -0.42 2.09 16 9 N -0.61 -14.09 2.77 -172.32 -0.48 -14.57 16 10 C 0.13 2.73 4.20 -3.71 -0.02 2.71 16 11 C -0.14 -2.33 5.55 -26.61 -0.15 -2.48 16 12 C 0.15 2.39 2.41 -67.89 -0.16 2.23 16 13 N -0.72 -9.49 5.07 -55.14 -0.28 -9.77 16 14 C 0.59 8.42 7.74 -12.96 -0.10 8.32 16 15 O -0.52 -9.13 16.53 5.17 0.09 -9.05 16 16 C -0.29 -3.45 6.51 -36.78 -0.24 -3.69 16 17 C 0.13 1.48 11.15 -18.55 -0.21 1.27 16 18 N -0.47 -5.45 10.52 -12.04 -0.13 -5.57 16 19 C 0.12 1.22 7.26 -14.31 -0.10 1.11 16 20 C -0.14 -1.14 6.32 -103.27 -0.65 -1.79 16 21 C -0.17 -1.22 11.14 -37.47 -0.42 -1.63 16 22 C -0.04 -0.18 12.03 29.33 0.35 0.17 16 23 O -0.17 -1.08 10.54 7.03 0.07 -1.01 16 24 C 0.01 0.07 11.83 30.01 0.36 0.43 16 25 S 0.19 1.59 22.03 -107.50 -2.37 -0.78 16 26 C -0.14 -2.40 5.65 -26.61 -0.15 -2.55 16 27 C 0.15 2.98 6.52 -3.71 -0.02 2.96 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.03 0.59 7.07 -51.93 -0.37 0.22 16 30 H 0.08 1.78 4.50 -51.92 -0.23 1.55 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.09 1.51 7.58 -51.93 -0.39 1.12 16 34 H 0.39 4.26 7.78 -40.82 -0.32 3.95 16 35 H 0.19 2.01 8.06 -52.49 -0.42 1.59 16 36 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.21 0.27 8.06 -52.49 -0.42 -0.15 16 38 H 0.21 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 1.33 7.93 -51.93 -0.41 0.91 16 LS Contribution 363.88 15.07 5.48 5.48 Total: -1.00 -34.12 363.88 -7.87 -41.99 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -5.14 Total: 1.70 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -1.76 Total: 0.33 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.11 Total: -56.58 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.16 Total: -10.06 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.90 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.37 Total: -0.78 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.12 -7.87 -41.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003749646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.110 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds