Wall clock time and date at job start Wed Apr 1 2020 04:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48500 * 109.47183 * 272.94605 * 3 2 1 5 5 H 1.48496 * 109.47289 * 32.94829 * 3 2 1 6 6 H 1.48510 * 109.47005 * 152.94500 * 3 2 1 7 7 C 1.38815 * 119.99908 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99570 * 339.34181 * 7 2 1 9 9 N 1.36936 * 120.00168 * 159.34094 * 7 2 1 10 10 C 1.46919 * 120.63311 * 332.63002 * 9 7 2 11 11 C 1.53192 * 108.77865 * 233.58778 * 10 9 7 12 12 C 1.53040 * 109.30825 * 305.36636 * 11 10 9 13 13 N 1.46509 * 109.45593 * 181.38680 * 12 11 10 14 14 C 1.34774 * 119.99641 * 154.99984 * 13 12 11 15 15 O 1.21722 * 120.00607 * 359.97438 * 14 13 12 16 16 C 1.46437 * 119.99635 * 179.97438 * 14 13 12 17 17 C 1.36860 * 126.11054 * 179.97438 * 16 14 13 18 18 N 1.30660 * 114.04559 * 179.76170 * 17 16 14 19 19 C 1.30437 * 117.27190 * 0.51343 * 18 17 16 20 20 C 1.47640 * 124.75403 * 179.76557 * 19 18 17 21 21 C 1.46926 * 127.16572 * 359.93716 * 20 19 18 22 22 C 1.34249 * 105.99738 * 180.14052 * 21 20 19 23 23 O 1.34192 * 109.09206 * 359.63531 * 22 21 20 24 24 C 1.33919 * 110.83637 * 0.24368 * 23 22 21 25 25 S 1.70920 * 110.48676 * 359.50129 * 19 18 17 26 26 C 1.53036 * 109.54254 * 61.36526 * 12 11 10 27 27 C 1.46929 * 120.62717 * 152.60786 * 9 7 2 28 28 H 0.97003 * 119.99846 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.58849 * 113.79573 * 10 9 7 30 30 H 1.09008 * 109.70322 * 353.44370 * 10 9 7 31 31 H 1.08994 * 109.49855 * 185.41105 * 11 10 9 32 32 H 1.09002 * 109.49548 * 65.31375 * 11 10 9 33 33 H 1.09002 * 109.45604 * 301.35157 * 12 11 10 34 34 H 0.96998 * 120.00057 * 334.99254 * 13 12 11 35 35 H 1.07997 * 122.97611 * 0.04479 * 17 16 14 36 36 H 1.08000 * 126.99920 * 0.02562 * 21 20 19 37 37 H 1.07994 * 125.45948 * 179.89655 * 22 21 20 38 38 H 1.08001 * 125.79672 * 180.02562 * 24 23 22 39 39 H 1.08998 * 109.49927 * 58.58210 * 26 12 11 40 40 H 1.08998 * 109.49616 * 178.68446 * 26 12 11 41 41 H 1.09003 * 109.58464 * 246.19518 * 27 9 7 42 42 H 1.08993 * 109.58903 * 6.48294 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4354 2.0823 -1.3982 5 1 1.4803 2.6338 0.7614 6 1 3.5776 1.4228 0.6369 7 6 2.0102 -1.2022 -0.0005 8 1 1.5222 -2.1076 0.3291 9 7 3.3135 -1.2402 -0.4189 10 6 3.8173 -0.2585 -1.3891 11 6 4.4621 -1.0079 -2.5593 12 6 5.5287 -1.9645 -2.0215 13 7 6.1705 -2.6588 -3.1407 14 6 7.4209 -3.1432 -3.0052 15 8 8.0172 -3.0035 -1.9532 16 6 8.0622 -3.8376 -4.1236 17 6 9.3205 -4.3759 -4.1240 18 7 9.6547 -4.9476 -5.2503 19 6 8.7765 -4.9272 -6.2145 20 6 8.9817 -5.5168 -7.5524 21 6 10.1780 -6.2167 -8.0400 22 6 9.9090 -6.5708 -9.3067 23 8 8.6711 -6.1610 -9.6235 24 6 8.0994 -5.5293 -8.5903 25 16 7.3521 -4.1288 -5.7095 26 6 4.8751 -2.9901 -1.0927 27 6 4.2349 -2.2632 0.0942 28 1 -0.4850 0.8401 0.0004 29 1 4.5596 0.3802 -0.9107 30 1 2.9922 0.3520 -1.7563 31 1 4.9245 -0.2923 -3.2390 32 1 3.6994 -1.5759 -3.0921 33 1 6.2778 -1.3986 -1.4676 34 1 5.6955 -2.7699 -3.9790 35 1 9.9772 -4.3358 -3.2676 36 1 11.0890 -6.4060 -7.4916 37 1 10.5797 -7.1041 -9.9640 38 1 7.1073 -5.1027 -8.5814 39 1 4.1085 -3.5394 -1.6392 40 1 5.6315 -3.6852 -0.7285 41 1 5.0115 -1.7879 0.6935 42 1 3.6844 -2.9759 0.7082 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003749646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:26 Heat of formation + Delta-G solvation = 28.959254 kcal Electronic energy + Delta-G solvation = -26658.802873 eV Core-core repulsion = 22732.298543 eV Total energy + Delta-G solvation = -3926.504331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.42813 -41.36167 -40.43135 -39.09627 -36.15342 -34.56351 -34.11999 -32.30439 -31.99893 -31.38317 -30.37126 -27.50529 -26.55864 -24.65162 -23.96773 -23.14788 -22.48571 -22.17279 -21.36866 -20.55387 -19.80401 -18.83517 -18.34765 -17.70818 -17.44495 -17.06786 -16.88653 -16.40812 -16.09443 -15.95900 -15.69235 -15.42613 -15.30977 -15.12988 -14.76535 -14.52142 -14.34415 -14.22401 -13.86628 -13.84634 -13.48908 -13.34290 -12.76215 -12.61563 -12.58479 -12.29578 -12.04875 -11.83786 -11.59223 -11.52454 -11.48511 -11.32968 -10.91747 -10.70133 -10.61912 -10.21490 -10.07987 -9.34918 -8.97320 -8.15773 -5.48336 -1.12811 -0.04919 0.35713 0.66143 1.15823 1.29768 1.43783 1.52061 1.76138 1.91970 2.05390 2.10086 2.41786 2.85527 3.05729 3.31390 3.61926 3.70553 3.78333 3.86719 3.93085 4.01362 4.14686 4.18392 4.29262 4.46495 4.54317 4.59689 4.65597 4.75635 4.82917 4.90220 4.94655 4.98272 5.01548 5.04943 5.14075 5.32160 5.34031 5.40064 5.86772 6.01090 6.13023 6.30499 6.48437 6.90500 6.98522 7.61209 8.01539 9.03871 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.023932 B = 0.002083 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.711864 B =13440.418567 C =14024.627312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.034 4.034 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.312 1.312 6 H -0.265 1.265 7 C -0.248 4.248 8 H 0.053 0.947 9 N -0.619 5.619 10 C 0.121 3.879 11 C -0.129 4.129 12 C 0.160 3.840 13 N -0.707 5.707 14 C 0.598 3.402 15 O -0.563 6.563 16 C -0.327 4.327 17 C 0.129 3.871 18 N -0.500 5.500 19 C 0.121 3.879 20 C -0.174 4.174 21 C -0.197 4.197 22 C -0.020 4.020 23 O -0.175 6.175 24 C 0.031 3.969 25 S 0.255 5.745 26 C -0.130 4.130 27 C 0.147 3.853 28 H 0.262 0.738 29 H 0.033 0.967 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.408 0.592 35 H 0.192 0.808 36 H 0.157 0.843 37 H 0.247 0.753 38 H 0.241 0.759 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.031 0.969 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.475 -12.072 -23.367 33.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.229 4.229 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.241 1.241 6 H -0.190 1.190 7 C -0.377 4.377 8 H 0.071 0.929 9 N -0.343 5.343 10 C -0.004 4.004 11 C -0.168 4.168 12 C 0.056 3.944 13 N -0.357 5.357 14 C 0.385 3.615 15 O -0.444 6.444 16 C -0.452 4.452 17 C -0.031 4.031 18 N -0.215 5.215 19 C -0.148 4.148 20 C -0.180 4.180 21 C -0.218 4.218 22 C -0.086 4.086 23 O -0.069 6.069 24 C -0.043 4.043 25 S 0.516 5.484 26 C -0.170 4.170 27 C 0.022 3.978 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.245 0.755 35 H 0.209 0.791 36 H 0.175 0.825 37 H 0.263 0.737 38 H 0.257 0.743 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.049 0.951 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.117 -11.949 -23.467 33.139 hybrid contribution 0.513 0.857 1.369 1.695 sum 20.630 -11.092 -22.098 32.201 Atomic orbital electron populations 1.69960 1.07345 1.27220 1.55570 1.25891 0.95837 1.00839 1.00309 0.85959 0.78575 0.80317 0.77876 1.19407 1.24133 1.18996 1.18848 0.86547 0.93596 1.38740 0.92924 1.44506 1.07787 1.34461 1.47561 1.21374 0.96978 0.92038 0.90038 1.22187 0.97484 0.98771 0.98402 1.20794 0.93979 0.92738 0.86907 1.45938 1.14721 1.57777 1.17266 1.16841 0.81230 0.77709 0.85740 1.90839 1.64875 1.59445 1.29198 1.25909 1.01869 1.16851 1.00572 1.22535 0.93160 0.91703 0.95725 1.66474 1.33309 1.21410 1.00346 1.24710 0.94087 0.99543 0.96479 1.19447 0.98459 1.08979 0.91066 1.22987 0.99405 1.03295 0.96153 1.24654 0.84677 1.02227 0.97039 1.83938 1.27466 1.57271 1.38245 1.24768 0.99196 0.96497 0.83832 1.83267 1.14953 1.47710 1.02491 1.22221 0.99373 0.97949 0.97427 1.21006 0.91854 0.90728 0.94246 0.92921 0.94901 0.92187 0.89017 0.90641 0.90594 0.75538 0.79130 0.82506 0.73747 0.74302 0.91682 0.91540 0.95126 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.19 13.97 21.65 0.30 -58.88 16 2 C -0.03 -1.95 5.23 84.86 0.44 -1.51 16 3 Si 0.94 45.72 24.34 68.60 1.67 47.39 16 4 H -0.27 -11.95 6.62 99.48 0.66 -11.29 16 5 H -0.31 -15.52 7.11 99.48 0.71 -14.81 16 6 H -0.27 -12.50 6.64 99.48 0.66 -11.84 16 7 C -0.25 -13.85 10.03 84.03 0.84 -13.00 16 8 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 9 N -0.62 -28.50 2.77 -699.09 -1.94 -30.44 16 10 C 0.12 4.87 4.20 86.36 0.36 5.24 16 11 C -0.13 -3.88 5.55 30.67 0.17 -3.71 16 12 C 0.16 4.73 2.41 45.01 0.11 4.84 16 13 N -0.71 -17.03 5.07 -446.58 -2.27 -19.30 16 14 C 0.60 16.15 7.74 86.38 0.67 16.82 16 15 O -0.56 -19.35 16.53 -4.42 -0.07 -19.43 16 16 C -0.33 -7.23 6.51 24.08 0.16 -7.07 16 17 C 0.13 2.94 11.15 84.54 0.94 3.89 16 18 N -0.50 -11.24 10.52 -192.00 -2.02 -13.26 16 19 C 0.12 2.21 7.26 87.38 0.63 2.84 16 20 C -0.17 -2.57 6.32 -18.99 -0.12 -2.69 16 21 C -0.20 -2.54 11.14 23.64 0.26 -2.27 16 22 C -0.02 -0.15 12.03 66.91 0.81 0.65 16 23 O -0.17 -1.67 10.54 2.23 0.02 -1.64 16 24 C 0.03 0.28 11.83 67.35 0.80 1.08 16 25 S 0.25 3.71 22.03 -56.49 -1.24 2.47 16 26 C -0.13 -4.20 5.65 30.67 0.17 -4.03 16 27 C 0.15 5.76 6.52 86.36 0.56 6.32 16 28 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 29 H 0.03 1.30 7.07 -2.39 -0.02 1.29 16 30 H 0.06 2.64 4.50 -2.38 -0.01 2.63 16 31 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.08 2.49 7.58 -2.39 -0.02 2.47 16 34 H 0.41 7.53 7.78 -92.71 -0.72 6.80 16 35 H 0.19 4.11 8.06 -2.91 -0.02 4.09 16 36 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.25 -0.26 8.06 -2.91 -0.02 -0.29 16 38 H 0.24 0.44 8.06 -2.91 -0.02 0.41 16 39 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.06 2.39 7.93 -2.39 -0.02 2.37 16 Total: -1.00 -75.77 363.88 1.52 -74.25 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.25 Total: 11.46 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 6.81 Total: 7.38 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -5.92 Total: -121.87 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.05 Total: -21.07 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.67 Total: 47.39 kcal Atomic # 16 Polarization: 3.71 SS G_CDS: -1.24 Total: 2.47 kcal Total: -75.77 1.52 -74.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003749646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.204 kcal (2) G-P(sol) polarization free energy of solvation -75.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds