Wall clock time and date at job start Wed Apr 1 2020 04:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99880 * 2 1 4 4 H 1.48499 * 109.47005 * 270.00212 * 3 2 1 5 5 H 1.48500 * 109.47329 * 30.00215 * 3 2 1 6 6 H 1.48503 * 109.47283 * 150.00138 * 3 2 1 7 7 C 1.38809 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99905 * 162.18640 * 7 2 1 9 9 N 1.36936 * 120.00289 * 342.18973 * 7 2 1 10 10 C 1.46917 * 120.63013 * 333.35004 * 9 7 2 11 11 C 1.53191 * 108.77843 * 233.58560 * 10 9 7 12 12 C 1.53038 * 109.31122 * 305.36915 * 11 10 9 13 13 N 1.46503 * 109.45911 * 181.38314 * 12 11 10 14 14 C 1.34778 * 120.00057 * 154.99292 * 13 12 11 15 15 O 1.21708 * 120.00021 * 0.02562 * 14 13 12 16 16 C 1.46768 * 119.99959 * 179.97438 * 14 13 12 17 17 N 1.35986 * 126.66351 * 354.78744 * 16 14 13 18 18 C 1.29849 * 108.80298 * 180.11079 * 17 16 14 19 19 O 1.34162 * 109.90534 * 359.63441 * 18 17 16 20 20 C 1.34899 * 108.23799 * 0.22903 * 19 18 17 21 21 C 1.46608 * 126.81170 * 180.02562 * 20 19 18 22 22 C 1.36445 * 125.34344 * 309.97310 * 21 20 19 23 23 C 1.37576 * 114.41698 * 179.97438 * 22 21 20 24 24 C 1.33829 * 115.21655 * 359.97438 * 23 22 21 25 25 S 1.75822 * 109.97939 * 359.77486 * 24 23 22 26 26 C 1.53030 * 109.54255 * 61.36151 * 12 11 10 27 27 C 1.46922 * 120.62848 * 153.32629 * 9 7 2 28 28 H 0.96995 * 119.99973 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.58924 * 113.80054 * 10 9 7 30 30 H 1.09007 * 109.70701 * 353.44324 * 10 9 7 31 31 H 1.09000 * 109.50142 * 185.40853 * 11 10 9 32 32 H 1.09004 * 109.51890 * 65.33116 * 11 10 9 33 33 H 1.08997 * 109.45755 * 301.34990 * 12 11 10 34 34 H 0.96997 * 120.00155 * 334.99844 * 13 12 11 35 35 H 1.08001 * 125.05068 * 179.89899 * 18 17 16 36 36 H 1.07998 * 122.79291 * 359.97438 * 22 21 20 37 37 H 1.08007 * 122.39182 * 180.02562 * 23 22 21 38 38 H 1.08005 * 125.00551 * 179.97438 * 24 23 22 39 39 H 1.09003 * 109.49971 * 58.58355 * 26 12 11 40 40 H 1.09001 * 109.50380 * 178.68403 * 26 12 11 41 41 H 1.09000 * 109.58785 * 246.19557 * 27 9 7 42 42 H 1.08997 * 109.59258 * 6.48267 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0514 -1.2247 -0.2856 9 7 1.3748 -2.3595 0.3638 10 6 0.2226 -2.3267 1.2747 11 6 0.4902 -3.2808 2.4430 12 6 0.8193 -4.6715 1.8954 13 7 1.0434 -5.5946 3.0107 14 6 0.8506 -6.9175 2.8398 15 8 0.4906 -7.3453 1.7587 16 6 1.0757 -7.8423 3.9569 17 7 1.5706 -7.5282 5.1840 18 6 1.6272 -8.6089 5.9016 19 8 1.1733 -9.6529 5.1917 20 6 0.8190 -9.2093 3.9680 21 6 0.2713 -10.0093 2.8682 22 6 0.8012 -11.1767 2.4012 23 6 0.1031 -11.7414 1.3590 24 6 -0.9820 -11.0637 0.9660 25 16 -1.1766 -9.6190 1.9491 26 6 2.0817 -4.5968 1.0338 27 6 1.8321 -3.6576 -0.1505 28 1 -0.4850 0.8400 0.0004 29 1 -0.6737 -2.6440 0.7418 30 1 0.0828 -1.3144 1.6543 31 1 -0.3955 -3.3389 3.0755 32 1 1.3321 -2.9119 3.0289 33 1 -0.0131 -5.0294 1.2896 34 1 1.3306 -5.2537 3.8722 35 1 1.9824 -8.6591 6.9203 36 1 1.6945 -11.6205 2.8154 37 1 0.4083 -12.6661 0.8918 38 1 -1.6426 -11.3621 0.1653 39 1 2.9089 -4.2154 1.6325 40 1 2.3287 -5.5917 0.6632 41 1 1.0670 -4.0835 -0.7996 42 1 2.7555 -3.5228 -0.7137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003808997.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:46 Heat of formation + Delta-G solvation = 49.687336 kcal Electronic energy + Delta-G solvation = -27548.554719 eV Core-core repulsion = 23622.949225 eV Total energy + Delta-G solvation = -3925.605493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.53381 -39.55514 -37.85160 -37.29380 -35.13216 -34.38716 -32.10760 -32.00466 -30.15149 -29.47961 -28.40413 -25.56083 -24.65597 -23.91705 -22.57668 -22.21524 -21.67256 -20.38943 -19.64897 -19.37632 -18.47942 -17.69024 -16.96991 -16.73837 -16.09736 -15.91502 -15.56546 -14.82775 -14.65298 -14.48283 -14.09550 -13.77555 -13.53700 -13.47901 -13.13702 -12.96690 -12.91130 -12.65385 -12.55167 -12.34000 -11.65075 -11.44356 -11.17516 -11.11439 -10.99572 -10.85004 -10.68648 -10.48521 -10.27539 -10.09983 -10.01200 -9.74488 -9.66281 -9.51607 -8.78866 -8.51886 -8.46701 -8.41360 -6.68511 -5.77888 -3.18286 0.12968 0.91717 1.46737 1.81257 1.82641 2.33626 2.54035 3.22932 3.33389 3.38977 3.45855 3.48484 3.80481 4.24230 4.51406 4.67081 4.82279 5.04561 5.16338 5.25084 5.30907 5.35426 5.43989 5.52960 5.60743 5.73763 5.78381 5.90238 6.00809 6.10717 6.14217 6.29111 6.35729 6.55920 6.58275 6.61607 6.81504 6.90250 7.01075 7.12337 7.34459 7.62544 7.74800 7.81664 8.32030 8.45567 9.22341 9.86078 10.42290 11.31052 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018685 B = 0.002512 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.156117 B =11144.515545 C =12014.230897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.147 4.147 12 C 0.151 3.849 13 N -0.703 5.703 14 C 0.591 3.409 15 O -0.524 6.524 16 C -0.047 4.047 17 N -0.458 5.458 18 C 0.180 3.820 19 O -0.191 6.191 20 C 0.103 3.897 21 C -0.151 4.151 22 C -0.099 4.099 23 C -0.145 4.145 24 C -0.220 4.220 25 S 0.237 5.763 26 C -0.139 4.139 27 C 0.148 3.852 28 H 0.254 0.746 29 H 0.021 0.979 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.404 0.596 35 H 0.258 0.742 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.169 0.831 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.021 0.979 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.653 -23.661 10.981 26.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.187 4.187 12 C 0.048 3.952 13 N -0.352 5.352 14 C 0.375 3.625 15 O -0.400 6.400 16 C -0.170 4.170 17 N -0.186 5.186 18 C -0.048 4.048 19 O -0.077 6.077 20 C 0.045 3.955 21 C -0.270 4.270 22 C -0.132 4.132 23 C -0.175 4.175 24 C -0.357 4.357 25 S 0.507 5.493 26 C -0.179 4.179 27 C 0.021 3.979 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.238 0.762 35 H 0.273 0.727 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.186 0.814 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.039 0.961 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.955 -22.010 10.398 24.421 hybrid contribution 1.650 -0.795 0.448 1.885 sum -0.305 -22.805 10.846 25.254 Atomic orbital electron populations 1.70028 1.05231 1.25492 1.54083 1.25006 0.95279 0.98382 1.01117 0.86310 0.79163 0.83686 0.77709 1.21428 1.21573 1.20531 1.19192 0.92926 0.84934 1.40937 0.91616 1.44108 1.35150 1.01275 1.51046 1.20761 0.88684 0.98354 0.87438 1.22546 1.00621 0.94455 1.01039 1.21121 0.98624 0.88649 0.86758 1.46178 1.67350 1.05678 1.15976 1.16604 0.78293 0.82117 0.85503 1.90888 1.47166 1.77024 1.24964 1.22289 1.07924 0.92369 0.94429 1.70679 1.16485 1.29009 1.02420 1.28048 0.98918 0.78484 0.99389 1.84532 1.61894 1.39509 1.21777 1.20494 0.99848 0.91503 0.83649 1.21654 1.03968 1.00458 1.00893 1.20598 1.01217 0.93854 0.97565 1.19880 0.96330 1.02323 0.98959 1.26120 1.03862 0.99288 1.06426 1.84509 1.18715 1.20226 1.25824 1.22382 0.97056 0.99626 0.98867 1.20864 0.97850 0.86510 0.92628 0.93629 0.96132 0.88781 0.92679 0.92072 0.89755 0.76163 0.72683 0.84098 0.83922 0.81357 0.92267 0.92666 0.96147 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.13 11.14 55.49 0.62 -25.51 16 2 C 0.00 0.01 4.91 -17.43 -0.09 -0.08 16 3 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.25 -6.89 9.59 -15.06 -0.14 -7.03 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.36 16 9 N -0.59 -14.94 3.00 -172.32 -0.52 -15.46 16 10 C 0.17 4.12 5.32 -3.72 -0.02 4.10 16 11 C -0.15 -2.76 5.55 -26.61 -0.15 -2.91 16 12 C 0.15 2.72 2.41 -67.89 -0.16 2.56 16 13 N -0.70 -11.06 5.07 -55.05 -0.28 -11.34 16 14 C 0.59 9.55 7.75 -12.81 -0.10 9.46 16 15 O -0.52 -9.43 13.58 5.18 0.07 -9.36 16 16 C -0.05 -0.66 7.07 -82.26 -0.58 -1.24 16 17 N -0.46 -5.49 11.04 -10.98 -0.12 -5.61 16 18 C 0.18 1.50 13.15 51.92 0.68 2.18 16 19 O -0.19 -1.96 10.76 4.43 0.05 -1.91 16 20 C 0.10 1.32 7.24 -35.89 -0.26 1.06 16 21 C -0.15 -1.88 5.63 -36.85 -0.21 -2.09 16 22 C -0.10 -1.03 10.17 -40.47 -0.41 -1.44 16 23 C -0.14 -1.32 10.14 -41.37 -0.42 -1.74 16 24 C -0.22 -2.06 11.22 29.18 0.33 -1.73 16 25 S 0.24 2.82 21.12 -107.50 -2.27 0.55 16 26 C -0.14 -2.62 5.65 -26.61 -0.15 -2.77 16 27 C 0.15 3.23 6.52 -3.71 -0.02 3.21 16 28 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 2.47 5.97 -51.93 -0.31 2.16 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.65 7.58 -51.93 -0.39 1.25 16 34 H 0.40 5.78 8.34 -40.82 -0.34 5.44 16 35 H 0.26 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.17 1.13 8.06 -52.48 -0.42 0.71 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 LS Contribution 366.04 15.07 5.52 5.52 Total: -1.00 -32.74 366.04 -8.90 -41.64 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.23 Total: 3.32 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -1.71 Total: 1.52 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -0.30 Total: -57.92 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.12 Total: -11.27 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -2.27 Total: 0.55 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.74 -8.90 -41.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003808997.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.332 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds