Wall clock time and date at job start Wed Apr 1 2020 04:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99880 * 2 1 4 4 H 1.48499 * 109.47005 * 270.00212 * 3 2 1 5 5 H 1.48500 * 109.47329 * 30.00215 * 3 2 1 6 6 H 1.48503 * 109.47283 * 150.00138 * 3 2 1 7 7 C 1.38809 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99905 * 162.18640 * 7 2 1 9 9 N 1.36936 * 120.00289 * 342.18973 * 7 2 1 10 10 C 1.46917 * 120.63013 * 333.35004 * 9 7 2 11 11 C 1.53191 * 108.77843 * 233.58560 * 10 9 7 12 12 C 1.53038 * 109.31122 * 305.36915 * 11 10 9 13 13 N 1.46503 * 109.45911 * 181.38314 * 12 11 10 14 14 C 1.34778 * 120.00057 * 154.99292 * 13 12 11 15 15 O 1.21708 * 120.00021 * 0.02562 * 14 13 12 16 16 C 1.46768 * 119.99959 * 179.97438 * 14 13 12 17 17 N 1.35986 * 126.66351 * 354.78744 * 16 14 13 18 18 C 1.29849 * 108.80298 * 180.11079 * 17 16 14 19 19 O 1.34162 * 109.90534 * 359.63441 * 18 17 16 20 20 C 1.34899 * 108.23799 * 0.22903 * 19 18 17 21 21 C 1.46608 * 126.81170 * 180.02562 * 20 19 18 22 22 C 1.36445 * 125.34344 * 309.97310 * 21 20 19 23 23 C 1.37576 * 114.41698 * 179.97438 * 22 21 20 24 24 C 1.33829 * 115.21655 * 359.97438 * 23 22 21 25 25 S 1.75822 * 109.97939 * 359.77486 * 24 23 22 26 26 C 1.53030 * 109.54255 * 61.36151 * 12 11 10 27 27 C 1.46922 * 120.62848 * 153.32629 * 9 7 2 28 28 H 0.96995 * 119.99973 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.58924 * 113.80054 * 10 9 7 30 30 H 1.09007 * 109.70701 * 353.44324 * 10 9 7 31 31 H 1.09000 * 109.50142 * 185.40853 * 11 10 9 32 32 H 1.09004 * 109.51890 * 65.33116 * 11 10 9 33 33 H 1.08997 * 109.45755 * 301.34990 * 12 11 10 34 34 H 0.96997 * 120.00155 * 334.99844 * 13 12 11 35 35 H 1.08001 * 125.05068 * 179.89899 * 18 17 16 36 36 H 1.07998 * 122.79291 * 359.97438 * 22 21 20 37 37 H 1.08007 * 122.39182 * 180.02562 * 23 22 21 38 38 H 1.08005 * 125.00551 * 179.97438 * 24 23 22 39 39 H 1.09003 * 109.49971 * 58.58355 * 26 12 11 40 40 H 1.09001 * 109.50380 * 178.68403 * 26 12 11 41 41 H 1.09000 * 109.58785 * 246.19557 * 27 9 7 42 42 H 1.08997 * 109.59258 * 6.48267 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0514 -1.2247 -0.2856 9 7 1.3748 -2.3595 0.3638 10 6 0.2226 -2.3267 1.2747 11 6 0.4902 -3.2808 2.4430 12 6 0.8193 -4.6715 1.8954 13 7 1.0434 -5.5946 3.0107 14 6 0.8506 -6.9175 2.8398 15 8 0.4906 -7.3453 1.7587 16 6 1.0757 -7.8423 3.9569 17 7 1.5706 -7.5282 5.1840 18 6 1.6272 -8.6089 5.9016 19 8 1.1733 -9.6529 5.1917 20 6 0.8190 -9.2093 3.9680 21 6 0.2713 -10.0093 2.8682 22 6 0.8012 -11.1767 2.4012 23 6 0.1031 -11.7414 1.3590 24 6 -0.9820 -11.0637 0.9660 25 16 -1.1766 -9.6190 1.9491 26 6 2.0817 -4.5968 1.0338 27 6 1.8321 -3.6576 -0.1505 28 1 -0.4850 0.8400 0.0004 29 1 -0.6737 -2.6440 0.7418 30 1 0.0828 -1.3144 1.6543 31 1 -0.3955 -3.3389 3.0755 32 1 1.3321 -2.9119 3.0289 33 1 -0.0131 -5.0294 1.2896 34 1 1.3306 -5.2537 3.8722 35 1 1.9824 -8.6591 6.9203 36 1 1.6945 -11.6205 2.8154 37 1 0.4083 -12.6661 0.8918 38 1 -1.6426 -11.3621 0.1653 39 1 2.9089 -4.2154 1.6325 40 1 2.3287 -5.5917 0.6632 41 1 1.0670 -4.0835 -0.7996 42 1 2.7555 -3.5228 -0.7137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003808997.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:45 Heat of formation + Delta-G solvation = 26.684437 kcal Electronic energy + Delta-G solvation = -27549.552199 eV Core-core repulsion = 23622.949225 eV Total energy + Delta-G solvation = -3926.602974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.35295 -40.88488 -38.96047 -38.58177 -36.10232 -35.91813 -33.89620 -32.87097 -31.85063 -31.23867 -29.30963 -27.18008 -25.74939 -24.99680 -23.96013 -23.63677 -22.97341 -21.59213 -21.06811 -20.34721 -19.53608 -18.85305 -18.42241 -17.79418 -17.30689 -16.93354 -16.75243 -16.43508 -15.95653 -15.60875 -15.37783 -15.33848 -15.11118 -14.78997 -14.43114 -14.31008 -14.08584 -13.91090 -13.64694 -13.32892 -13.23362 -13.02559 -12.62306 -12.53935 -12.53480 -12.26724 -12.04617 -11.99753 -11.88289 -11.77377 -11.60018 -11.42864 -11.18449 -10.56265 -10.54215 -10.07963 -9.39205 -9.33103 -8.73185 -7.87948 -5.31900 -0.72706 0.09575 0.64360 0.98536 1.05193 1.48074 1.49590 1.53850 1.59683 1.75618 2.09100 2.20070 2.52162 3.03782 3.27861 3.41238 3.61972 3.69026 3.87658 4.01770 4.15290 4.28123 4.31055 4.32188 4.43795 4.52508 4.58737 4.62729 4.76953 4.83288 4.97175 5.02352 5.02617 5.09511 5.12517 5.25431 5.27599 5.44357 5.45352 5.47687 5.63739 5.70435 6.23860 6.38155 6.56160 7.09491 7.13919 7.83728 8.36060 9.19304 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018685 B = 0.002512 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.156117 B =11144.515545 C =12014.230897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.968 3.032 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.264 4.264 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.180 3.820 11 C -0.129 4.129 12 C 0.164 3.836 13 N -0.697 5.697 14 C 0.588 3.412 15 O -0.547 6.547 16 C -0.073 4.073 17 N -0.487 5.487 18 C 0.209 3.791 19 O -0.188 6.188 20 C 0.102 3.898 21 C -0.178 4.178 22 C -0.092 4.092 23 C -0.147 4.147 24 C -0.207 4.207 25 S 0.176 5.824 26 C -0.123 4.123 27 C 0.147 3.853 28 H 0.251 0.749 29 H -0.003 1.003 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.412 0.588 35 H 0.313 0.687 36 H 0.160 0.840 37 H 0.175 0.825 38 H 0.195 0.805 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.012 0.988 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.826 -25.658 12.557 28.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.796 3.204 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.195 1.195 7 C -0.394 4.394 8 H 0.085 0.915 9 N -0.333 5.333 10 C 0.054 3.946 11 C -0.169 4.169 12 C 0.060 3.940 13 N -0.347 5.347 14 C 0.374 3.626 15 O -0.425 6.425 16 C -0.195 4.195 17 N -0.215 5.215 18 C -0.019 4.019 19 O -0.075 6.075 20 C 0.044 3.956 21 C -0.296 4.296 22 C -0.126 4.126 23 C -0.176 4.176 24 C -0.343 4.343 25 S 0.445 5.555 26 C -0.163 4.163 27 C 0.021 3.979 28 H 0.060 0.940 29 H 0.015 0.985 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.249 0.751 35 H 0.327 0.673 36 H 0.177 0.823 37 H 0.193 0.807 38 H 0.212 0.788 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.030 0.970 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.457 -24.024 11.991 26.854 hybrid contribution 1.195 -0.330 -0.039 1.240 sum 0.738 -24.354 11.953 27.139 Atomic orbital electron populations 1.70182 1.06640 1.25957 1.55294 1.25772 0.96049 1.01463 1.01258 0.85269 0.78096 0.79482 0.77532 1.21267 1.21715 1.19531 1.19517 0.93219 0.86035 1.40610 0.91479 1.44358 1.35301 1.01867 1.51761 1.20563 0.87643 0.97933 0.88488 1.22272 1.01753 0.93710 0.99166 1.20741 0.97541 0.88520 0.87170 1.45918 1.67703 1.05465 1.15574 1.16898 0.77512 0.82197 0.85975 1.90873 1.48017 1.77419 1.26209 1.21945 1.10118 0.92526 0.94869 1.70653 1.18109 1.30658 1.02047 1.29333 0.95428 0.76890 1.00202 1.84572 1.61946 1.39979 1.20983 1.20553 0.99432 0.91170 0.84455 1.21794 1.04545 1.01546 1.01733 1.20981 1.01418 0.92924 0.97280 1.20263 0.95740 1.03210 0.98427 1.26448 1.04285 0.97491 1.06120 1.84667 1.20094 1.22946 1.27765 1.22173 0.97482 0.98919 0.97755 1.20945 0.97464 0.85753 0.93777 0.93988 0.98451 0.91573 0.90683 0.91491 0.91507 0.75135 0.67262 0.82259 0.80727 0.78794 0.91952 0.92079 0.97042 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.43 11.14 21.65 0.24 -55.19 16 2 C -0.05 -2.81 4.91 84.86 0.42 -2.40 16 3 Si 0.97 44.95 29.59 68.60 2.03 46.98 16 4 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.26 -14.69 9.59 84.03 0.81 -13.88 16 8 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 9 N -0.61 -31.33 3.00 -699.11 -2.10 -33.42 16 10 C 0.18 8.78 5.32 86.36 0.46 9.24 16 11 C -0.13 -4.87 5.55 30.67 0.17 -4.70 16 12 C 0.16 5.92 2.41 45.01 0.11 6.03 16 13 N -0.70 -21.66 5.07 -446.28 -2.26 -23.92 16 14 C 0.59 19.06 7.75 86.47 0.67 19.73 16 15 O -0.55 -20.08 13.58 -4.37 -0.06 -20.14 16 16 C -0.07 -2.00 7.07 40.94 0.29 -1.71 16 17 N -0.49 -10.77 11.04 -303.54 -3.35 -14.12 16 18 C 0.21 2.81 13.15 130.54 1.72 4.52 16 19 O -0.19 -3.43 10.76 -7.07 -0.08 -3.50 16 20 C 0.10 2.52 7.24 24.66 0.18 2.70 16 21 C -0.18 -4.32 5.63 24.04 0.14 -4.18 16 22 C -0.09 -1.76 10.17 21.69 0.22 -1.53 16 23 C -0.15 -2.31 10.14 21.11 0.21 -2.10 16 24 C -0.21 -3.56 11.22 66.82 0.75 -2.81 16 25 S 0.18 4.24 21.12 -56.49 -1.19 3.05 16 26 C -0.12 -4.62 5.65 30.67 0.17 -4.44 16 27 C 0.15 6.48 6.52 86.37 0.56 7.04 16 28 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.07 3.60 5.97 -2.38 -0.01 3.58 16 31 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.07 2.68 7.58 -2.39 -0.02 2.66 16 34 H 0.41 11.41 8.34 -92.71 -0.77 10.64 16 35 H 0.31 -0.05 8.06 -2.91 -0.02 -0.07 16 36 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 37 H 0.18 1.60 8.06 -2.91 -0.02 1.57 16 38 H 0.19 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 Total: -1.00 -73.29 366.04 0.40 -72.89 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.29 Total: 15.86 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 6.87 Total: 11.50 kcal Atomic # 7 Polarization: -119.18 SS G_CDS: -7.47 Total: -126.65 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.14 Total: -23.64 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -1.19 Total: 3.05 kcal Total: -73.29 0.40 -72.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003808997.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.579 kcal (2) G-P(sol) polarization free energy of solvation -73.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds