Wall clock time and date at job start Wed Apr 1 2020 04:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99997 * 2 1 4 4 H 1.48504 * 109.47068 * 239.99769 * 3 2 1 5 5 H 1.48500 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47468 * 119.99754 * 3 2 1 7 7 C 1.38815 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00065 * 163.08673 * 7 2 1 9 9 N 1.36940 * 119.99926 * 343.09555 * 7 2 1 10 10 C 1.46920 * 120.63037 * 151.80656 * 9 7 2 11 11 C 1.53190 * 108.77620 * 126.41253 * 10 9 7 12 12 C 1.53043 * 109.31652 * 54.63063 * 11 10 9 13 13 C 1.53041 * 109.53586 * 298.63652 * 12 11 10 14 14 H 1.08993 * 109.52420 * 301.39457 * 13 12 11 15 15 N 1.46504 * 109.49406 * 181.31233 * 13 12 11 16 16 C 1.34777 * 119.99437 * 154.88862 * 15 13 12 17 17 O 1.21609 * 120.00359 * 0.27095 * 16 15 13 18 18 C 1.47304 * 119.99649 * 180.28043 * 16 15 13 19 19 C 1.34217 * 124.78898 * 179.72322 * 18 16 15 20 20 C 1.39565 * 115.53035 * 179.85381 * 19 18 16 21 21 C 1.47751 * 129.59720 * 180.16392 * 20 19 18 22 22 C 1.34062 * 119.56052 * 180.26280 * 21 20 19 23 23 N 1.36558 * 121.42017 * 0.02562 * 22 21 20 24 24 H 0.97006 * 119.15922 * 179.97438 * 23 22 21 25 25 C 1.34300 * 121.68208 * 0.02562 * 23 22 21 26 26 O 1.21946 * 119.69476 * 179.97438 * 25 23 22 27 27 C 1.39389 * 112.90066 * 0.41647 * 20 19 18 28 28 S 1.75559 * 124.79156 * 0.02562 * 18 16 15 29 29 C 1.46930 * 120.62930 * 331.82191 * 9 7 2 30 30 H 0.97003 * 120.00062 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.58330 * 246.19395 * 10 9 7 32 32 H 1.09000 * 109.58812 * 6.47784 * 10 9 7 33 33 H 1.09000 * 109.49628 * 174.58399 * 11 10 9 34 34 H 1.08996 * 109.49586 * 294.68157 * 11 10 9 35 35 H 1.08996 * 109.45823 * 178.61494 * 12 11 10 36 36 H 1.09007 * 109.45510 * 58.65442 * 12 11 10 37 37 H 0.96995 * 120.00032 * 335.16108 * 15 13 12 38 38 H 1.08003 * 122.23131 * 0.02862 * 19 18 16 39 39 H 1.07999 * 120.22230 * 0.24172 * 21 20 19 40 40 H 1.07988 * 119.29260 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.58367 * 113.80093 * 29 9 7 42 42 H 1.09007 * 109.58367 * 353.37905 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2715 9 7 1.3699 -2.3623 0.3459 10 6 1.8136 -3.6528 -0.1985 11 6 2.0671 -4.6175 0.9642 12 6 0.8117 -4.7011 1.8355 13 6 0.4973 -3.3195 2.4139 14 1 1.3466 -2.9679 2.9996 15 7 -0.6863 -3.4069 3.2729 16 6 -0.8688 -2.5097 4.2620 17 8 -0.0534 -1.6248 4.4384 18 6 -2.0557 -2.6012 5.1296 19 6 -2.3296 -1.7652 6.1432 20 6 -3.5110 -2.0289 6.8379 21 6 -4.1070 -1.3163 7.9868 22 6 -5.2631 -1.7516 8.5077 23 7 -5.9062 -2.8438 7.9996 24 1 -6.7410 -3.1305 8.4021 25 6 -5.4121 -3.5318 6.9574 26 8 -6.0165 -4.5023 6.5331 27 6 -4.1942 -3.1391 6.3443 28 16 -3.3078 -3.8237 4.9884 29 6 0.2260 -2.3401 1.2677 30 1 -0.4850 0.8401 -0.0004 31 1 1.0399 -4.0602 -0.8492 32 1 2.7330 -3.5129 -0.7671 33 1 2.3038 -5.6063 0.5715 34 1 2.9020 -4.2539 1.5632 35 1 0.9810 -5.4057 2.6497 36 1 -0.0286 -5.0411 1.2300 37 1 -1.3366 -4.1127 3.1322 38 1 -1.6805 -0.9417 6.4021 39 1 -3.6145 -0.4506 8.4045 40 1 -5.6946 -1.2277 9.3476 41 1 -0.6772 -2.6405 0.7364 42 1 0.0992 -1.3344 1.6685 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007714236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:39 Heat of formation + Delta-G solvation = -24.241865 kcal Electronic energy + Delta-G solvation = -27397.676041 eV Core-core repulsion = 23468.864737 eV Total energy + Delta-G solvation = -3928.811304 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.05871 -41.14188 -39.19901 -38.49384 -37.10756 -35.92363 -34.51222 -32.53281 -31.91090 -31.03638 -30.33916 -27.27438 -26.76711 -24.84350 -23.99970 -23.66252 -22.29595 -21.67313 -21.04092 -20.05190 -19.25724 -18.75795 -17.93468 -17.71346 -17.15502 -16.82250 -16.77771 -16.67062 -16.13724 -15.80743 -15.40864 -15.33222 -15.28519 -14.81397 -14.60896 -14.18391 -14.09316 -13.82334 -13.80480 -13.49678 -13.06936 -13.04470 -12.94061 -12.65541 -12.55064 -12.31176 -12.14715 -12.08616 -11.73413 -11.66463 -11.50768 -11.31107 -11.22151 -10.58626 -10.55072 -10.27816 -10.13302 -8.81473 -8.70543 -7.89983 -5.36481 -1.11604 0.05149 0.39627 0.61754 0.97882 1.41552 1.47144 1.52165 1.83878 1.97216 2.04191 2.44569 2.49110 3.25183 3.34908 3.52945 3.68447 3.76750 3.79547 3.91298 4.10105 4.21866 4.22035 4.44656 4.48763 4.56585 4.63669 4.79121 4.88158 4.91411 4.98639 5.07671 5.15386 5.17622 5.21411 5.26756 5.32865 5.50433 5.60685 5.71915 5.74498 5.86932 6.29454 6.38797 6.82632 6.98431 7.11412 7.83163 8.32975 9.14976 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.015023 B = 0.002821 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.316869 B = 9923.256521 C =11130.202604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.050 4.050 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.294 1.294 6 H -0.283 1.283 7 C -0.266 4.266 8 H 0.069 0.931 9 N -0.609 5.609 10 C 0.134 3.866 11 C -0.120 4.120 12 C -0.110 4.110 13 C 0.130 3.870 14 H 0.061 0.939 15 N -0.702 5.702 16 C 0.580 3.420 17 O -0.560 6.560 18 C -0.225 4.225 19 C -0.067 4.067 20 C 0.005 3.995 21 C -0.190 4.190 22 C 0.135 3.865 23 N -0.601 5.601 24 H 0.435 0.565 25 C 0.562 3.438 26 O -0.585 6.585 27 C -0.303 4.303 28 S 0.243 5.757 29 C 0.179 3.821 30 H 0.247 0.753 31 H 0.021 0.979 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.407 0.593 38 H 0.163 0.837 39 H 0.183 0.817 40 H 0.229 0.771 41 H -0.001 1.001 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.167 -7.874 20.210 24.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.246 4.246 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.220 1.220 6 H -0.209 1.209 7 C -0.397 4.397 8 H 0.087 0.913 9 N -0.333 5.333 10 C 0.009 3.991 11 C -0.159 4.159 12 C -0.148 4.148 13 C 0.025 3.975 14 H 0.079 0.921 15 N -0.353 5.353 16 C 0.365 3.635 17 O -0.439 6.439 18 C -0.346 4.346 19 C -0.101 4.101 20 C -0.012 4.012 21 C -0.214 4.214 22 C 0.011 3.989 23 N -0.237 5.237 24 H 0.276 0.724 25 C 0.357 3.643 26 O -0.470 6.470 27 C -0.424 4.424 28 S 0.514 5.486 29 C 0.051 3.949 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.243 0.757 38 H 0.181 0.819 39 H 0.200 0.800 40 H 0.245 0.755 41 H 0.017 0.983 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.098 -8.968 18.899 23.680 hybrid contribution 0.018 1.986 0.494 2.046 sum -11.080 -6.982 19.393 23.401 Atomic orbital electron populations 1.70166 1.06733 1.25743 1.55024 1.25829 0.96056 1.01692 1.01032 0.85393 0.77717 0.79360 0.78354 1.19330 1.21993 1.20927 1.19472 0.92935 0.86088 1.41160 0.91288 1.44233 1.35970 1.02938 1.50120 1.21199 0.97668 0.85609 0.94592 1.21894 0.96794 1.00217 0.97019 1.21690 0.99383 0.93770 0.99965 1.21672 0.86378 0.98459 0.91029 0.92064 1.45842 1.26328 1.31202 1.31883 1.17459 0.84307 0.81599 0.80139 1.90835 1.45805 1.35351 1.71929 1.24249 1.01475 1.05013 1.03854 1.20302 0.96696 0.99821 0.93257 1.19620 0.92261 0.93087 0.96188 1.21803 0.98109 1.04382 0.97078 1.22374 0.92262 0.86419 0.97886 1.43003 1.25640 1.26521 1.28586 0.72389 1.15799 0.84350 0.83120 0.80996 1.90966 1.62149 1.29083 1.64768 1.24306 1.04060 1.06389 1.07624 1.83882 1.11198 1.26139 1.27426 1.20778 0.88234 0.97428 0.88412 0.94358 0.96125 0.92422 0.88288 0.92694 0.89409 0.90779 0.75658 0.81931 0.79973 0.75492 0.98272 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.17 11.20 21.65 0.24 -57.93 16 2 C -0.05 -2.98 4.92 84.86 0.42 -2.56 16 3 Si 0.96 47.54 29.59 68.60 2.03 49.57 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 6 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 7 C -0.27 -15.33 9.58 84.03 0.81 -14.52 16 8 H 0.07 3.83 7.88 -2.91 -0.02 3.80 16 9 N -0.61 -31.68 2.99 -699.10 -2.09 -33.77 16 10 C 0.13 5.46 6.52 86.36 0.56 6.02 16 11 C -0.12 -3.74 6.08 30.67 0.19 -3.55 16 12 C -0.11 -3.31 5.35 30.62 0.16 -3.15 16 13 C 0.13 5.17 2.61 45.07 0.12 5.28 16 14 H 0.06 2.76 7.57 -2.39 -0.02 2.74 16 15 N -0.70 -24.20 5.08 -445.56 -2.26 -26.46 16 16 C 0.58 21.75 7.77 86.63 0.67 22.42 16 17 O -0.56 -26.03 16.41 -4.06 -0.07 -26.10 16 18 C -0.22 -6.71 6.36 23.74 0.15 -6.56 16 19 C -0.07 -1.74 9.82 21.67 0.21 -1.53 16 20 C 0.00 0.10 6.08 -20.16 -0.12 -0.02 16 21 C -0.19 -2.00 10.29 23.84 0.25 -1.75 16 22 C 0.13 0.67 11.11 83.01 0.92 1.60 16 23 N -0.60 -6.67 5.23 -319.30 -1.67 -8.34 16 24 H 0.44 2.30 8.87 -92.70 -0.82 1.48 16 25 C 0.56 12.75 7.71 85.22 0.66 13.41 16 26 O -0.58 -17.62 17.89 -5.14 -0.09 -17.71 16 27 C -0.30 -7.37 6.48 23.45 0.15 -7.22 16 28 S 0.24 6.25 22.27 -56.49 -1.26 4.99 16 29 C 0.18 9.10 4.88 86.36 0.42 9.52 16 30 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 31 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 33 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.41 11.29 7.67 -92.71 -0.71 10.58 16 38 H 0.16 4.05 7.98 -2.91 -0.02 4.03 16 39 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 40 H 0.23 -1.49 8.06 -2.92 -0.02 -1.52 16 41 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 42 H 0.05 2.80 6.06 -2.38 -0.01 2.78 16 Total: -1.00 -86.64 364.78 -0.05 -86.69 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -0.44 Total: 11.66 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 5.57 Total: 17.39 kcal Atomic # 7 Polarization: -120.72 SS G_CDS: -5.78 Total: -126.50 kcal Atomic # 8 Polarization: -43.65 SS G_CDS: -0.16 Total: -43.81 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Atomic # 16 Polarization: 6.25 SS G_CDS: -1.26 Total: 4.99 kcal Total: -86.64 -0.05 -86.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007714236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.446 kcal (2) G-P(sol) polarization free energy of solvation -86.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds