Wall clock time and date at job start Wed Apr 1 2020 04:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00083 * 2 1 4 4 H 1.48497 * 109.47110 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47134 * 299.99785 * 3 2 1 6 6 H 1.48500 * 109.47368 * 59.99845 * 3 2 1 7 7 C 1.38806 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00148 * 191.22223 * 7 2 1 9 9 N 1.36935 * 120.00048 * 11.22433 * 7 2 1 10 10 C 1.46928 * 120.63090 * 211.19898 * 9 7 2 11 11 C 1.53187 * 108.77609 * 233.62752 * 10 9 7 12 12 C 1.53039 * 109.34369 * 305.34746 * 11 10 9 13 13 C 1.53111 * 109.49771 * 61.34751 * 12 11 10 14 14 H 1.08996 * 109.49214 * 58.61606 * 13 12 11 15 15 N 1.46504 * 109.51133 * 178.68541 * 13 12 11 16 16 C 1.34783 * 119.99735 * 204.86661 * 15 13 12 17 17 O 1.21700 * 119.99904 * 0.02562 * 16 15 13 18 18 C 1.46773 * 119.99816 * 179.97438 * 16 15 13 19 19 N 1.35990 * 126.65824 * 75.97624 * 18 16 15 20 20 C 1.29853 * 108.79726 * 179.88283 * 19 18 16 21 21 O 1.34162 * 109.90790 * 0.39044 * 20 19 18 22 22 C 1.34893 * 108.23967 * 359.75750 * 21 20 19 23 23 C 1.46609 * 126.81657 * 179.97438 * 22 21 20 24 24 C 1.36446 * 125.33791 * 355.07031 * 23 22 21 25 25 C 1.37583 * 114.41401 * 179.85434 * 24 23 22 26 26 C 1.33824 * 115.21464 * 0.43549 * 25 24 23 27 27 S 1.75822 * 109.98166 * 359.76449 * 26 25 24 28 28 C 1.46931 * 120.63113 * 31.22049 * 9 7 2 29 29 H 0.97003 * 119.99505 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.58668 * 113.84468 * 10 9 7 31 31 H 1.08994 * 109.70514 * 353.48833 * 10 9 7 32 32 H 1.09004 * 109.50032 * 65.31996 * 11 10 9 33 33 H 1.09001 * 109.49916 * 185.38093 * 11 10 9 34 34 H 1.09001 * 109.46434 * 181.39673 * 12 11 10 35 35 H 1.08997 * 109.46078 * 301.36491 * 12 11 10 36 36 H 0.96996 * 120.00425 * 24.87445 * 15 13 12 37 37 H 1.08007 * 125.04957 * 180.14917 * 20 19 18 38 38 H 1.07997 * 122.79430 * 0.04312 * 24 23 22 39 39 H 1.08003 * 122.38795 * 180.20483 * 25 24 23 40 40 H 1.08007 * 125.01047 * 179.73792 * 26 25 24 41 41 H 1.09000 * 109.58631 * 246.15400 * 28 9 7 42 42 H 1.08994 * 109.58428 * 6.58503 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0747 -1.2112 0.1815 9 7 1.3452 -2.3766 -0.2319 10 6 1.7988 -3.6286 0.3890 11 6 1.9956 -4.6798 -0.7078 12 6 0.7051 -4.8131 -1.5195 13 6 0.3799 -3.4737 -2.1861 14 1 1.2082 -3.1771 -2.8295 15 7 -0.8383 -3.6094 -2.9886 16 6 -1.0546 -2.7821 -4.0303 17 8 -0.2378 -1.9226 -4.3046 18 6 -2.2748 -2.9184 -4.8346 19 7 -3.5264 -2.5176 -4.4853 20 6 -4.3429 -2.8040 -5.4536 21 8 -3.6752 -3.3999 -6.4531 22 6 -2.3764 -3.4881 -6.0995 23 6 -1.2879 -4.0696 -6.8910 24 6 -1.4361 -4.7067 -8.0885 25 6 -0.2608 -5.1638 -8.6387 26 6 0.8389 -4.9231 -7.9151 27 16 0.4127 -4.0623 -6.4425 28 6 0.1647 -2.4087 -1.1061 29 1 -0.4849 0.8401 -0.0004 30 1 1.0486 -3.9772 1.0988 31 1 2.7425 -3.4607 0.9078 32 1 2.8088 -4.3719 -1.3652 33 1 2.2396 -5.6395 -0.2523 34 1 0.8348 -5.5784 -2.2848 35 1 -0.1128 -5.0970 -0.8573 36 1 -1.4891 -4.2946 -2.7701 37 1 -5.4030 -2.5971 -5.4527 38 1 -2.3956 -4.8383 -8.5663 39 1 -0.2286 -5.6833 -9.5850 40 1 1.8406 -5.2150 -8.1944 41 1 -0.7187 -2.6579 -0.5182 42 1 0.0310 -1.4342 -1.5754 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008903833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:17 Heat of formation + Delta-G solvation = 49.899782 kcal Electronic energy + Delta-G solvation = -28191.985579 eV Core-core repulsion = 24266.389298 eV Total energy + Delta-G solvation = -3925.596281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.35239 -39.38605 -37.88974 -37.26086 -34.88837 -34.11123 -32.64572 -32.07650 -30.01988 -29.19722 -28.13608 -25.23640 -24.96218 -24.12317 -22.52636 -22.13384 -21.67500 -20.25706 -19.47020 -19.36248 -18.41602 -17.51898 -16.91861 -16.69672 -16.11051 -15.75072 -15.51685 -15.04571 -14.63320 -14.16237 -13.96258 -13.77498 -13.55209 -13.35134 -13.22518 -12.98157 -12.85769 -12.46160 -12.34916 -12.28790 -11.92420 -11.51686 -10.96451 -10.93324 -10.84605 -10.74392 -10.69436 -10.48841 -10.23076 -10.15328 -9.98944 -9.92571 -9.64190 -9.48649 -8.75957 -8.55401 -8.39949 -8.22241 -6.56634 -5.69985 -3.19460 0.06080 1.11030 1.51331 1.73150 2.23998 2.52834 2.55565 2.77900 3.35920 3.45256 3.52012 3.53922 4.08177 4.42952 4.56828 4.73811 4.80491 5.09091 5.20426 5.30688 5.37297 5.41605 5.44286 5.58221 5.64755 5.70644 5.74834 5.91221 5.98128 6.09563 6.10906 6.16142 6.35560 6.43924 6.49251 6.71674 6.78452 6.88853 6.99536 7.33372 7.37195 7.80498 7.80936 7.89436 8.45607 8.55792 9.28276 9.90458 10.46755 11.37328 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.003514 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.918065 B = 7965.144977 C = 8582.886226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.009 3.991 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.258 4.258 8 H 0.065 0.935 9 N -0.588 5.588 10 C 0.142 3.858 11 C -0.130 4.130 12 C -0.116 4.116 13 C 0.116 3.884 14 H 0.085 0.915 15 N -0.700 5.700 16 C 0.593 3.407 17 O -0.505 6.505 18 C -0.034 4.034 19 N -0.445 5.445 20 C 0.178 3.822 21 O -0.191 6.191 22 C 0.074 3.926 23 C -0.153 4.153 24 C -0.105 4.105 25 C -0.142 4.142 26 C -0.222 4.222 27 S 0.226 5.774 28 C 0.168 3.832 29 H 0.254 0.746 30 H 0.018 0.982 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.395 0.605 37 H 0.258 0.742 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.171 0.829 41 H 0.019 0.981 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.715 -14.630 -15.939 22.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.191 4.191 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.387 4.387 8 H 0.083 0.917 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.170 4.170 12 C -0.155 4.155 13 C 0.011 3.989 14 H 0.103 0.897 15 N -0.350 5.350 16 C 0.375 3.625 17 O -0.378 6.378 18 C -0.159 4.159 19 N -0.173 5.173 20 C -0.049 4.049 21 O -0.078 6.078 22 C 0.018 3.982 23 C -0.271 4.271 24 C -0.137 4.137 25 C -0.171 4.171 26 C -0.359 4.359 27 S 0.494 5.506 28 C 0.041 3.959 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.229 0.771 37 H 0.274 0.726 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.188 0.812 41 H 0.037 0.963 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.510 -13.000 -14.322 19.861 hybrid contribution -0.993 -0.203 -1.768 2.037 sum -5.503 -13.203 -16.089 21.528 Atomic orbital electron populations 1.69974 1.05304 1.25452 1.53477 1.25160 0.95360 0.98471 1.00071 0.86220 0.79297 0.83972 0.77255 1.20181 1.21452 1.21670 1.19167 0.90961 0.83904 1.44716 0.91684 1.43933 1.32588 1.03563 1.50987 1.20963 0.97830 0.87020 0.92629 1.22004 0.96591 0.99303 0.99122 1.21696 0.98909 0.96036 0.98811 1.22138 0.85421 0.97499 0.93799 0.89700 1.45996 1.24284 1.35122 1.29552 1.16552 0.83534 0.82142 0.80297 1.90924 1.45258 1.32718 1.68947 1.22228 0.94018 1.05187 0.94437 1.70801 0.99341 1.19171 1.27945 1.28123 1.00061 0.95659 0.81104 1.84429 1.18119 1.61741 1.43553 1.20311 0.81881 1.02520 0.93499 1.21879 0.95351 1.09693 1.00148 1.20649 1.00259 0.98930 0.93878 1.19940 0.91141 1.03968 1.02089 1.26226 1.03505 1.06193 1.00009 1.85283 0.95302 1.51251 1.18808 1.21106 0.88473 0.97610 0.88750 0.93617 0.96419 0.92617 0.92098 0.92603 0.92982 0.92147 0.77128 0.72616 0.83719 0.83794 0.81201 0.96305 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 11.07 55.49 0.61 -26.74 16 2 C 0.01 0.25 5.04 -17.43 -0.09 0.17 16 3 Si 0.90 22.77 29.57 -169.99 -5.03 17.74 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 7 C -0.26 -7.30 9.58 -15.06 -0.14 -7.45 16 8 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 9 N -0.59 -15.08 2.99 -172.32 -0.51 -15.59 16 10 C 0.14 2.95 6.51 -3.71 -0.02 2.93 16 11 C -0.13 -2.18 6.08 -26.61 -0.16 -2.35 16 12 C -0.12 -1.87 5.36 -26.65 -0.14 -2.01 16 13 C 0.12 2.28 2.60 -67.77 -0.18 2.11 16 14 H 0.08 1.84 7.58 -51.93 -0.39 1.45 16 15 N -0.70 -12.27 5.08 -54.93 -0.28 -12.55 16 16 C 0.59 11.44 5.94 -12.81 -0.08 11.36 16 17 O -0.50 -11.62 16.08 5.19 0.08 -11.53 16 18 C -0.03 -0.58 6.91 -82.26 -0.57 -1.15 16 19 N -0.44 -6.94 11.33 -10.97 -0.12 -7.06 16 20 C 0.18 1.91 13.15 51.93 0.68 2.59 16 21 O -0.19 -2.28 10.75 4.45 0.05 -2.23 16 22 C 0.07 1.07 7.27 -35.89 -0.26 0.81 16 23 C -0.15 -2.01 6.44 -36.85 -0.24 -2.24 16 24 C -0.10 -1.09 10.17 -40.47 -0.41 -1.50 16 25 C -0.14 -1.27 10.14 -41.37 -0.42 -1.69 16 26 C -0.22 -2.14 11.22 29.18 0.33 -1.81 16 27 S 0.23 2.98 20.84 -107.50 -2.24 0.73 16 28 C 0.17 4.17 4.83 -3.71 -0.02 4.15 16 29 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.40 5.83 8.58 -40.82 -0.35 5.48 16 37 H 0.26 1.21 8.06 -52.48 -0.42 0.79 16 38 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.17 1.18 8.06 -52.48 -0.42 0.76 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 2.84 6.11 -51.93 -0.32 2.53 16 LS Contribution 367.74 15.07 5.54 5.54 Total: -1.00 -35.76 367.74 -8.87 -44.63 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.25 Total: 3.14 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -1.72 Total: 3.92 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: -0.30 Total: -61.94 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.13 Total: -13.77 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.03 Total: 17.74 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -2.24 Total: 0.73 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.76 -8.87 -44.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008903833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.527 kcal (2) G-P(sol) polarization free energy of solvation -35.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds