Wall clock time and date at job start Wed Apr 1 2020 04:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00083 * 2 1 4 4 H 1.48497 * 109.47110 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47134 * 299.99785 * 3 2 1 6 6 H 1.48500 * 109.47368 * 59.99845 * 3 2 1 7 7 C 1.38806 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00148 * 191.22223 * 7 2 1 9 9 N 1.36935 * 120.00048 * 11.22433 * 7 2 1 10 10 C 1.46928 * 120.63090 * 211.19898 * 9 7 2 11 11 C 1.53187 * 108.77609 * 233.62752 * 10 9 7 12 12 C 1.53039 * 109.34369 * 305.34746 * 11 10 9 13 13 C 1.53111 * 109.49771 * 61.34751 * 12 11 10 14 14 H 1.08996 * 109.49214 * 58.61606 * 13 12 11 15 15 N 1.46504 * 109.51133 * 178.68541 * 13 12 11 16 16 C 1.34783 * 119.99735 * 204.86661 * 15 13 12 17 17 O 1.21700 * 119.99904 * 0.02562 * 16 15 13 18 18 C 1.46773 * 119.99816 * 179.97438 * 16 15 13 19 19 N 1.35990 * 126.65824 * 75.97624 * 18 16 15 20 20 C 1.29853 * 108.79726 * 179.88283 * 19 18 16 21 21 O 1.34162 * 109.90790 * 0.39044 * 20 19 18 22 22 C 1.34893 * 108.23967 * 359.75750 * 21 20 19 23 23 C 1.46609 * 126.81657 * 179.97438 * 22 21 20 24 24 C 1.36446 * 125.33791 * 355.07031 * 23 22 21 25 25 C 1.37583 * 114.41401 * 179.85434 * 24 23 22 26 26 C 1.33824 * 115.21464 * 0.43549 * 25 24 23 27 27 S 1.75822 * 109.98166 * 359.76449 * 26 25 24 28 28 C 1.46931 * 120.63113 * 31.22049 * 9 7 2 29 29 H 0.97003 * 119.99505 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.58668 * 113.84468 * 10 9 7 31 31 H 1.08994 * 109.70514 * 353.48833 * 10 9 7 32 32 H 1.09004 * 109.50032 * 65.31996 * 11 10 9 33 33 H 1.09001 * 109.49916 * 185.38093 * 11 10 9 34 34 H 1.09001 * 109.46434 * 181.39673 * 12 11 10 35 35 H 1.08997 * 109.46078 * 301.36491 * 12 11 10 36 36 H 0.96996 * 120.00425 * 24.87445 * 15 13 12 37 37 H 1.08007 * 125.04957 * 180.14917 * 20 19 18 38 38 H 1.07997 * 122.79430 * 0.04312 * 24 23 22 39 39 H 1.08003 * 122.38795 * 180.20483 * 25 24 23 40 40 H 1.08007 * 125.01047 * 179.73792 * 26 25 24 41 41 H 1.09000 * 109.58631 * 246.15400 * 28 9 7 42 42 H 1.08994 * 109.58428 * 6.58503 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0747 -1.2112 0.1815 9 7 1.3452 -2.3766 -0.2319 10 6 1.7988 -3.6286 0.3890 11 6 1.9956 -4.6798 -0.7078 12 6 0.7051 -4.8131 -1.5195 13 6 0.3799 -3.4737 -2.1861 14 1 1.2082 -3.1771 -2.8295 15 7 -0.8383 -3.6094 -2.9886 16 6 -1.0546 -2.7821 -4.0303 17 8 -0.2378 -1.9226 -4.3046 18 6 -2.2748 -2.9184 -4.8346 19 7 -3.5264 -2.5176 -4.4853 20 6 -4.3429 -2.8040 -5.4536 21 8 -3.6752 -3.3999 -6.4531 22 6 -2.3764 -3.4881 -6.0995 23 6 -1.2879 -4.0696 -6.8910 24 6 -1.4361 -4.7067 -8.0885 25 6 -0.2608 -5.1638 -8.6387 26 6 0.8389 -4.9231 -7.9151 27 16 0.4127 -4.0623 -6.4425 28 6 0.1647 -2.4087 -1.1061 29 1 -0.4849 0.8401 -0.0004 30 1 1.0486 -3.9772 1.0988 31 1 2.7425 -3.4607 0.9078 32 1 2.8088 -4.3719 -1.3652 33 1 2.2396 -5.6395 -0.2523 34 1 0.8348 -5.5784 -2.2848 35 1 -0.1128 -5.0970 -0.8573 36 1 -1.4891 -4.2946 -2.7701 37 1 -5.4030 -2.5971 -5.4527 38 1 -2.3956 -4.8383 -8.5663 39 1 -0.2286 -5.6833 -9.5850 40 1 1.8406 -5.2150 -8.1944 41 1 -0.7187 -2.6579 -0.5182 42 1 0.0310 -1.4342 -1.5754 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008903833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:16 Heat of formation + Delta-G solvation = 22.227982 kcal Electronic energy + Delta-G solvation = -28193.185519 eV Core-core repulsion = 24266.389298 eV Total energy + Delta-G solvation = -3926.796220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.35198 -40.91858 -38.94714 -38.68755 -35.98365 -35.84461 -34.45092 -33.06180 -31.92849 -30.72631 -29.20659 -27.26613 -25.98573 -25.21446 -23.95861 -23.54139 -23.07828 -21.67209 -21.04972 -20.22217 -19.53091 -18.76249 -18.59283 -17.94353 -17.24268 -17.15386 -16.77939 -16.56977 -16.08163 -15.72787 -15.33491 -15.19310 -15.12085 -14.74260 -14.37994 -14.17715 -14.14100 -14.00589 -13.67963 -13.53768 -13.25908 -12.92680 -12.72094 -12.62833 -12.52824 -12.31134 -12.04938 -11.95956 -11.74676 -11.70944 -11.63883 -11.29508 -11.21626 -11.02320 -10.60930 -10.21830 -9.64722 -9.17137 -8.66207 -7.88989 -5.41462 -0.85149 0.21622 0.61275 0.89094 1.17496 1.39204 1.41760 1.43376 1.52438 1.56671 1.77734 2.07427 2.47403 3.14495 3.28054 3.40282 3.61145 3.77999 3.92650 4.09086 4.12213 4.23016 4.24389 4.27324 4.47012 4.49784 4.58111 4.60280 4.80906 4.90380 4.98489 5.03857 5.08782 5.17843 5.19035 5.19516 5.29509 5.36345 5.39495 5.52066 5.60581 5.75606 6.32992 6.38468 6.42675 7.02985 7.12464 7.82935 8.33688 9.15166 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.003514 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.918065 B = 7965.144977 C = 8582.886226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.051 4.051 3 Si 0.964 3.036 4 H -0.259 1.259 5 H -0.299 1.299 6 H -0.285 1.285 7 C -0.264 4.264 8 H 0.070 0.930 9 N -0.609 5.609 10 C 0.135 3.865 11 C -0.120 4.120 12 C -0.107 4.107 13 C 0.133 3.867 14 H 0.061 0.939 15 N -0.689 5.689 16 C 0.596 3.404 17 O -0.556 6.556 18 C -0.079 4.079 19 N -0.495 5.495 20 C 0.209 3.791 21 O -0.183 6.183 22 C 0.089 3.911 23 C -0.186 4.186 24 C -0.078 4.078 25 C -0.140 4.140 26 C -0.196 4.196 27 S 0.136 5.864 28 C 0.182 3.818 29 H 0.246 0.754 30 H 0.020 0.980 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.410 0.590 37 H 0.315 0.685 38 H 0.170 0.830 39 H 0.185 0.815 40 H 0.199 0.801 41 H -0.005 1.005 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.970 -17.653 -18.333 26.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.246 4.246 3 Si 0.792 3.208 4 H -0.183 1.183 5 H -0.227 1.227 6 H -0.211 1.211 7 C -0.394 4.394 8 H 0.088 0.912 9 N -0.333 5.333 10 C 0.010 3.990 11 C -0.159 4.159 12 C -0.145 4.145 13 C 0.027 3.973 14 H 0.079 0.921 15 N -0.339 5.339 16 C 0.380 3.620 17 O -0.433 6.433 18 C -0.201 4.201 19 N -0.223 5.223 20 C -0.018 4.018 21 O -0.070 6.070 22 C 0.032 3.968 23 C -0.303 4.303 24 C -0.112 4.112 25 C -0.169 4.169 26 C -0.332 4.332 27 S 0.403 5.597 28 C 0.055 3.945 29 H 0.055 0.945 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.246 0.754 37 H 0.329 0.671 38 H 0.188 0.812 39 H 0.202 0.798 40 H 0.216 0.784 41 H 0.013 0.987 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.761 -16.084 -16.687 23.660 hybrid contribution -0.965 0.639 -1.160 1.639 sum -5.726 -15.445 -17.847 24.286 Atomic orbital electron populations 1.70163 1.06845 1.25465 1.55443 1.25951 0.96116 1.01806 1.00764 0.85246 0.79012 0.79918 0.76601 1.18282 1.22679 1.21142 1.19549 0.91436 0.85240 1.43193 0.91210 1.44215 1.32390 1.04634 1.52051 1.21197 0.97662 0.86070 0.94071 1.21900 0.96594 0.99716 0.97693 1.21675 0.99037 0.94210 0.99599 1.21671 0.85466 0.98179 0.91957 0.92120 1.45828 1.23983 1.35199 1.28933 1.16918 0.83886 0.81005 0.80171 1.90871 1.47341 1.34733 1.70362 1.21808 0.93670 1.08857 0.95743 1.70722 0.99552 1.21521 1.30507 1.29337 1.01190 0.92202 0.79095 1.84467 1.17044 1.61839 1.43617 1.20413 0.82913 1.01060 0.92429 1.21889 0.94226 1.12493 1.01685 1.21111 1.01974 0.95921 0.92152 1.20382 0.90000 1.03345 1.03166 1.26561 1.05218 1.04007 0.97401 1.85626 0.97464 1.53947 1.22634 1.20729 0.87732 0.96633 0.89419 0.94499 0.96248 0.92362 0.92625 0.88214 0.89333 0.91006 0.75424 0.67063 0.81223 0.79821 0.78352 0.98690 0.94036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.32 11.07 21.65 0.24 -60.08 16 2 C -0.05 -3.08 5.04 84.86 0.43 -2.65 16 3 Si 0.96 48.74 29.57 68.60 2.03 50.76 16 4 H -0.26 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.30 -15.56 7.11 99.48 0.71 -14.85 16 6 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 7 C -0.26 -15.48 9.58 84.03 0.81 -14.68 16 8 H 0.07 3.94 7.85 -2.91 -0.02 3.91 16 9 N -0.61 -32.41 2.99 -699.11 -2.09 -34.50 16 10 C 0.13 5.57 6.51 86.36 0.56 6.14 16 11 C -0.12 -3.76 6.08 30.67 0.19 -3.58 16 12 C -0.11 -3.29 5.36 30.64 0.16 -3.12 16 13 C 0.13 5.44 2.60 45.09 0.12 5.56 16 14 H 0.06 2.80 7.58 -2.39 -0.02 2.78 16 15 N -0.69 -25.47 5.08 -445.90 -2.26 -27.74 16 16 C 0.60 24.65 5.94 86.47 0.51 25.17 16 17 O -0.56 -27.94 16.08 -4.35 -0.07 -28.01 16 18 C -0.08 -2.77 6.91 40.94 0.28 -2.48 16 19 N -0.50 -15.68 11.33 -303.52 -3.44 -19.12 16 20 C 0.21 4.09 13.15 130.54 1.72 5.80 16 21 O -0.18 -3.99 10.75 -7.00 -0.08 -4.07 16 22 C 0.09 2.55 7.27 24.66 0.18 2.73 16 23 C -0.19 -4.74 6.44 24.04 0.15 -4.58 16 24 C -0.08 -1.39 10.17 21.70 0.22 -1.17 16 25 C -0.14 -1.95 10.14 21.11 0.21 -1.73 16 26 C -0.20 -3.25 11.22 66.82 0.75 -2.50 16 27 S 0.14 3.66 20.84 -56.49 -1.18 2.48 16 28 C 0.18 9.64 4.83 86.36 0.42 10.06 16 29 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 30 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.06 2.34 7.94 -2.39 -0.02 2.32 16 32 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.41 12.49 8.58 -92.71 -0.80 11.70 16 37 H 0.31 1.71 8.06 -2.91 -0.02 1.68 16 38 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 39 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 42 H 0.04 2.65 6.11 -2.39 -0.01 2.64 16 Total: -1.00 -87.19 367.74 0.14 -87.05 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.27 Total: 14.26 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 6.71 Total: 18.95 kcal Atomic # 7 Polarization: -133.88 SS G_CDS: -7.55 Total: -141.43 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.15 Total: -32.07 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 2.03 Total: 50.76 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.18 Total: 2.48 kcal Total: -87.19 0.14 -87.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008903833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.280 kcal (2) G-P(sol) polarization free energy of solvation -87.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds