Wall clock time and date at job start Wed Apr 1 2020 04:41:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31611 * 1
3 3 Si 1.86808 * 120.00043 * 2 1
4 4 H 1.48506 * 109.46931 * 270.00372 * 3 2 1
5 5 H 1.48502 * 109.46911 * 29.99891 * 3 2 1
6 6 H 1.48500 * 109.47260 * 150.00157 * 3 2 1
7 7 C 1.38808 * 120.00376 * 180.02562 * 2 1 3
8 8 H 1.08000 * 120.00101 * 179.97438 * 7 2 1
9 9 N 1.36934 * 119.99628 * 359.97438 * 7 2 1
10 10 C 1.47424 * 125.64935 * 13.56435 * 9 7 2
11 11 C 1.54912 * 104.83437 * 155.90552 * 10 9 7
12 12 C 1.55159 * 101.58141 * 37.00714 * 11 10 9
13 13 C 1.47031 * 125.64805 * 193.60384 * 9 7 2
14 14 H 1.09004 * 110.00624 * 300.51501 * 13 9 7
15 15 C 1.52996 * 109.87946 * 61.60594 * 13 9 7
16 16 N 1.46503 * 109.46708 * 182.37892 * 15 13 9
17 17 C 1.34777 * 120.00011 * 185.08684 * 16 15 13
18 18 O 1.21612 * 119.99856 * 0.02562 * 17 16 15
19 19 C 1.47293 * 120.00245 * 180.02562 * 17 16 15
20 20 C 1.34219 * 124.79566 * 179.72685 * 19 17 16
21 21 C 1.39569 * 115.53395 * 179.79329 * 20 19 17
22 22 C 1.47756 * 129.59577 * 180.19304 * 21 20 19
23 23 C 1.34051 * 119.55717 * 180.30614 * 22 21 20
24 24 N 1.36563 * 121.42690 * 359.97438 * 23 22 21
25 25 H 0.96994 * 119.16257 * 180.02562 * 24 23 22
26 26 C 1.34305 * 121.67486 * 0.04054 * 24 23 22
27 27 O 1.21949 * 119.69294 * 179.97438 * 26 24 23
28 28 C 1.39389 * 112.90126 * 0.49024 * 21 20 19
29 29 S 1.75560 * 124.78981 * 0.03109 * 19 17 16
30 30 H 0.97002 * 120.00528 * 359.97438 * 1 2 3
31 31 H 1.08999 * 110.36599 * 274.74158 * 10 9 7
32 32 H 1.09004 * 110.36664 * 37.06982 * 10 9 7
33 33 H 1.09008 * 111.00561 * 278.94166 * 11 10 9
34 34 H 1.08991 * 111.00876 * 155.08095 * 11 10 9
35 35 H 1.08995 * 110.72233 * 206.13475 * 12 11 10
36 36 H 1.09002 * 110.71853 * 82.86190 * 12 11 10
37 37 H 1.08996 * 109.47658 * 302.38100 * 15 13 9
38 38 H 1.08997 * 109.47163 * 62.38695 * 15 13 9
39 39 H 0.96998 * 120.00190 * 5.09359 * 16 15 13
40 40 H 1.08000 * 122.22930 * 0.02562 * 20 19 17
41 41 H 1.08003 * 120.21869 * 0.28509 * 22 21 20
42 42 H 1.07993 * 119.29059 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4976 2.0465 -1.4001
5 1 1.4476 2.6527 0.7000
6 1 3.5477 1.4402 0.7000
7 6 2.0102 -1.2021 -0.0005
8 1 3.0902 -1.2020 -0.0010
9 7 1.3256 -2.3880 -0.0005
10 6 -0.1127 -2.5497 -0.2810
11 6 -0.2603 -4.0141 -0.7643
12 6 0.7666 -4.7456 0.1401
13 6 1.9029 -3.7108 0.2800
14 1 2.6952 -3.9312 -0.4355
15 6 2.4635 -3.7425 1.7032
16 7 3.0866 -5.0446 1.9535
17 6 3.5599 -5.3405 3.1803
18 8 3.4693 -4.5268 4.0795
19 6 4.1869 -6.6493 3.4319
20 6 4.6937 -7.0418 4.6111
21 6 5.2391 -8.3263 4.6339
22 6 5.8676 -9.0629 5.7500
23 6 6.3356 -10.3021 5.5441
24 7 6.2446 -10.9036 4.3215
25 1 6.5938 -11.8015 4.2093
26 6 5.6842 -10.2833 3.2703
27 8 5.6223 -10.8542 2.1945
28 6 5.1634 -8.9698 3.3998
29 16 4.3837 -7.9135 2.2296
30 1 -0.4851 0.8400 0.0004
31 1 -0.6964 -2.3888 0.6254
32 1 -0.4267 -1.8586 -1.0633
33 1 0.0095 -4.1075 -1.8163
34 1 -1.2700 -4.3841 -0.5872
35 1 1.1287 -5.6529 -0.3433
36 1 0.3305 -4.9732 1.1128
37 1 3.2084 -2.9552 1.8180
38 1 1.6544 -3.5840 2.4160
39 1 3.1586 -5.6938 1.2364
40 1 4.6769 -6.4075 5.4850
41 1 5.9497 -8.6058 6.7251
42 1 6.7938 -10.8367 6.3630
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001027981689.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:41:07
Heat of formation + Delta-G solvation = 5.573264 kcal
Electronic energy + Delta-G solvation = -26864.659962 eV
Core-core repulsion = 22937.141538 eV
Total energy + Delta-G solvation = -3927.518423 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.35234 -39.74082 -37.96334 -37.52177 -36.36420 -34.41695 -32.52245 -31.70758
-30.27470 -29.65859 -28.75724 -26.08721 -24.84666 -24.22534 -23.46441 -21.62079
-20.69497 -20.20512 -19.75937 -19.27747 -18.36765 -17.13641 -16.97776 -16.69826
-15.99771 -15.94297 -15.74381 -15.21341 -14.96091 -14.62510 -14.46030 -13.99040
-13.87390 -13.56050 -13.36564 -13.11106 -12.79620 -12.40363 -12.35991 -12.11408
-11.91922 -11.79538 -11.36780 -11.27515 -10.97397 -10.80211 -10.67419 -10.29771
-10.19453 -10.08441 -9.91601 -9.83278 -9.80360 -9.71327 -9.29776 -8.82362
-8.61196 -8.15163 -6.88285 -5.78618 -3.15687 -0.25524 0.90147 1.00663
1.46296 1.80689 2.61719 2.99569 3.10915 3.20107 3.38978 3.44845
3.46457 4.03917 4.19116 4.45657 4.51096 4.57467 4.77744 5.13335
5.28471 5.35057 5.36385 5.46498 5.53736 5.58419 5.67939 5.77964
5.81293 5.99962 6.08763 6.21454 6.21911 6.42527 6.45544 6.47856
6.51106 6.64795 6.73630 6.99181 7.49972 7.50409 7.52491 7.58860
7.77434 8.17049 8.23673 9.14861 9.75305 10.41951 11.32887
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.020517 B = 0.002287 C = 0.002151
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1364.408692 B =12238.938684 C =13012.325962
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.915 5.915
2 C -0.001 4.001
3 Si 0.911 3.089
4 H -0.288 1.288
5 H -0.290 1.290
6 H -0.279 1.279
7 C -0.235 4.235
8 H 0.077 0.923
9 N -0.588 5.588
10 C 0.171 3.829
11 C -0.148 4.148
12 C -0.129 4.129
13 C 0.151 3.849
14 H 0.039 0.961
15 C 0.108 3.892
16 N -0.713 5.713
17 C 0.578 3.422
18 O -0.520 6.520
19 C -0.207 4.207
20 C -0.072 4.072
21 C -0.001 4.001
22 C -0.172 4.172
23 C 0.106 3.894
24 N -0.619 5.619
25 H 0.419 0.581
26 C 0.570 3.430
27 O -0.540 6.540
28 C -0.278 4.278
29 S 0.250 5.750
30 H 0.254 0.746
31 H 0.026 0.974
32 H 0.075 0.925
33 H 0.059 0.941
34 H 0.059 0.941
35 H 0.058 0.942
36 H 0.064 0.936
37 H 0.072 0.928
38 H 0.071 0.929
39 H 0.394 0.606
40 H 0.161 0.839
41 H 0.153 0.847
42 H 0.168 0.832
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.773 -22.804 10.403 27.282
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.561 5.561
2 C -0.198 4.198
3 Si 0.741 3.259
4 H -0.215 1.215
5 H -0.216 1.216
6 H -0.205 1.205
7 C -0.364 4.364
8 H 0.094 0.906
9 N -0.312 5.312
10 C 0.047 3.953
11 C -0.187 4.187
12 C -0.167 4.167
13 C 0.042 3.958
14 H 0.057 0.943
15 C -0.017 4.017
16 N -0.363 5.363
17 C 0.361 3.639
18 O -0.397 6.397
19 C -0.328 4.328
20 C -0.105 4.105
21 C -0.018 4.018
22 C -0.198 4.198
23 C -0.018 4.018
24 N -0.256 5.256
25 H 0.257 0.743
26 C 0.365 3.635
27 O -0.420 6.420
28 C -0.399 4.399
29 S 0.520 5.480
30 H 0.064 0.936
31 H 0.044 0.956
32 H 0.093 0.907
33 H 0.078 0.922
34 H 0.077 0.923
35 H 0.077 0.923
36 H 0.082 0.918
37 H 0.090 0.910
38 H 0.090 0.910
39 H 0.228 0.772
40 H 0.178 0.822
41 H 0.171 0.829
42 H 0.185 0.815
Dipole moment (debyes) X Y Z Total
from point charges 10.082 -22.187 8.731 25.887
hybrid contribution 1.056 0.347 1.407 1.793
sum 11.138 -21.840 10.138 26.530
Atomic orbital electron populations
1.69932 1.05023 1.25356 1.55801 1.24905 0.95691 0.97893 1.01344
0.86137 0.78804 0.83341 0.77590 1.21505 1.21576 1.20496 1.18993
0.90434 0.82153 1.44776 0.90567 1.44492 1.05791 1.00683 1.80208
1.21492 0.84561 0.90350 0.98946 1.23009 0.97470 0.99522 0.98689
1.22633 0.97101 0.97008 0.99913 1.21147 0.94553 0.88238 0.91854
0.94327 1.22402 0.97608 0.81702 0.99939 1.46086 1.59995 1.19723
1.10523 1.17084 0.78734 0.84484 0.83558 1.90844 1.56834 1.48300
1.43720 1.24593 1.08577 1.00335 0.99328 1.20070 0.97158 0.94626
0.98611 1.19315 0.96782 0.93127 0.92603 1.21367 1.05432 0.94265
0.98689 1.21457 0.98216 0.94472 0.87664 1.43009 1.53879 1.19303
1.09369 0.74278 1.15741 0.78798 0.85231 0.83754 1.91002 1.58527
1.67141 1.25346 1.24150 1.15136 1.00856 0.99786 1.84136 1.53008
1.02274 1.08575 0.93561 0.95629 0.90667 0.92229 0.92271 0.92300
0.91752 0.90969 0.91023 0.77221 0.82152 0.82931 0.81473
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -26.40 10.53 55.49 0.58 -25.81 16
2 C 0.00 -0.03 5.47 -17.44 -0.10 -0.12 16
3 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16
4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16
7 C -0.24 -6.36 9.76 -15.06 -0.15 -6.51 16
8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16
9 N -0.59 -14.37 3.13 -162.57 -0.51 -14.88 16
10 C 0.17 4.03 5.43 -2.53 -0.01 4.02 16
11 C -0.15 -2.69 7.09 -24.58 -0.17 -2.86 16
12 C -0.13 -2.12 6.10 -24.90 -0.15 -2.27 16
13 C 0.15 2.93 3.22 -66.95 -0.22 2.71 16
14 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16
15 C 0.11 2.04 5.07 -4.04 -0.02 2.02 16
16 N -0.71 -10.81 5.32 -61.43 -0.33 -11.14 16
17 C 0.58 9.09 7.80 -12.58 -0.10 8.99 16
18 O -0.52 -10.04 16.74 5.27 0.09 -9.95 16
19 C -0.21 -2.59 6.36 -37.32 -0.24 -2.83 16
20 C -0.07 -0.79 9.82 -40.50 -0.40 -1.19 16
21 C 0.00 -0.01 6.08 -105.08 -0.64 -0.65 16
22 C -0.17 -1.00 10.29 -37.17 -0.38 -1.39 16
23 C 0.11 0.42 11.11 -16.92 -0.19 0.23 16
24 N -0.62 -3.87 5.23 -14.86 -0.08 -3.94 16
25 H 0.42 1.52 8.87 -40.82 -0.36 1.16 16
26 C 0.57 6.22 7.71 -15.08 -0.12 6.11 16
27 O -0.54 -7.68 17.89 4.96 0.09 -7.59 16
28 C -0.28 -3.10 6.48 -37.76 -0.24 -3.35 16
29 S 0.25 2.80 22.27 -107.50 -2.39 0.40 16
30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16
31 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16
32 H 0.08 1.98 6.85 -51.93 -0.36 1.62 16
33 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16
34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16
35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
36 H 0.06 1.05 7.81 -51.93 -0.41 0.64 16
37 H 0.07 1.53 7.92 -51.93 -0.41 1.12 16
38 H 0.07 1.50 8.08 -51.93 -0.42 1.08 16
39 H 0.39 4.97 7.40 -40.82 -0.30 4.67 16
40 H 0.16 1.63 7.98 -52.49 -0.42 1.21 16
41 H 0.15 0.50 8.06 -52.48 -0.42 0.07 16
42 H 0.17 -0.08 8.06 -52.49 -0.42 -0.51 16
LS Contribution 367.59 15.07 5.54 5.54
Total: -1.00 -35.05 367.59 -10.33 -45.37
By element:
Atomic # 1 Polarization: 7.36 SS G_CDS: -5.18 Total: 2.19 kcal
Atomic # 6 Polarization: 6.02 SS G_CDS: -3.12 Total: 2.90 kcal
Atomic # 7 Polarization: -55.45 SS G_CDS: -0.33 Total: -55.78 kcal
Atomic # 8 Polarization: -17.72 SS G_CDS: 0.18 Total: -17.55 kcal
Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal
Atomic # 16 Polarization: 2.80 SS G_CDS: -2.39 Total: 0.40 kcal
Total LS contribution 5.54 Total: 5.54 kcal
Total: -35.05 -10.33 -45.37 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001027981689.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.948 kcal
(2) G-P(sol) polarization free energy of solvation -35.047 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.901 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.375 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.573 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds