Wall clock time and date at job start Wed Apr 1 2020 04:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86808 * 120.00043 * 2 1 4 4 H 1.48506 * 109.46931 * 270.00372 * 3 2 1 5 5 H 1.48502 * 109.46911 * 29.99891 * 3 2 1 6 6 H 1.48500 * 109.47260 * 150.00157 * 3 2 1 7 7 C 1.38808 * 120.00376 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00101 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99628 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.64935 * 13.56435 * 9 7 2 11 11 C 1.54912 * 104.83437 * 155.90552 * 10 9 7 12 12 C 1.55159 * 101.58141 * 37.00714 * 11 10 9 13 13 C 1.47031 * 125.64805 * 193.60384 * 9 7 2 14 14 H 1.09004 * 110.00624 * 300.51501 * 13 9 7 15 15 C 1.52996 * 109.87946 * 61.60594 * 13 9 7 16 16 N 1.46503 * 109.46708 * 182.37892 * 15 13 9 17 17 C 1.34777 * 120.00011 * 185.08684 * 16 15 13 18 18 O 1.21612 * 119.99856 * 0.02562 * 17 16 15 19 19 C 1.47293 * 120.00245 * 180.02562 * 17 16 15 20 20 C 1.34219 * 124.79566 * 179.72685 * 19 17 16 21 21 C 1.39569 * 115.53395 * 179.79329 * 20 19 17 22 22 C 1.47756 * 129.59577 * 180.19304 * 21 20 19 23 23 C 1.34051 * 119.55717 * 180.30614 * 22 21 20 24 24 N 1.36563 * 121.42690 * 359.97438 * 23 22 21 25 25 H 0.96994 * 119.16257 * 180.02562 * 24 23 22 26 26 C 1.34305 * 121.67486 * 0.04054 * 24 23 22 27 27 O 1.21949 * 119.69294 * 179.97438 * 26 24 23 28 28 C 1.39389 * 112.90126 * 0.49024 * 21 20 19 29 29 S 1.75560 * 124.78981 * 0.03109 * 19 17 16 30 30 H 0.97002 * 120.00528 * 359.97438 * 1 2 3 31 31 H 1.08999 * 110.36599 * 274.74158 * 10 9 7 32 32 H 1.09004 * 110.36664 * 37.06982 * 10 9 7 33 33 H 1.09008 * 111.00561 * 278.94166 * 11 10 9 34 34 H 1.08991 * 111.00876 * 155.08095 * 11 10 9 35 35 H 1.08995 * 110.72233 * 206.13475 * 12 11 10 36 36 H 1.09002 * 110.71853 * 82.86190 * 12 11 10 37 37 H 1.08996 * 109.47658 * 302.38100 * 15 13 9 38 38 H 1.08997 * 109.47163 * 62.38695 * 15 13 9 39 39 H 0.96998 * 120.00190 * 5.09359 * 16 15 13 40 40 H 1.08000 * 122.22930 * 0.02562 * 20 19 17 41 41 H 1.08003 * 120.21869 * 0.28509 * 22 21 20 42 42 H 1.07993 * 119.29059 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1127 -2.5497 -0.2810 11 6 -0.2603 -4.0141 -0.7643 12 6 0.7666 -4.7456 0.1401 13 6 1.9029 -3.7108 0.2800 14 1 2.6952 -3.9312 -0.4355 15 6 2.4635 -3.7425 1.7032 16 7 3.0866 -5.0446 1.9535 17 6 3.5599 -5.3405 3.1803 18 8 3.4693 -4.5268 4.0795 19 6 4.1869 -6.6493 3.4319 20 6 4.6937 -7.0418 4.6111 21 6 5.2391 -8.3263 4.6339 22 6 5.8676 -9.0629 5.7500 23 6 6.3356 -10.3021 5.5441 24 7 6.2446 -10.9036 4.3215 25 1 6.5938 -11.8015 4.2093 26 6 5.6842 -10.2833 3.2703 27 8 5.6223 -10.8542 2.1945 28 6 5.1634 -8.9698 3.3998 29 16 4.3837 -7.9135 2.2296 30 1 -0.4851 0.8400 0.0004 31 1 -0.6964 -2.3888 0.6254 32 1 -0.4267 -1.8586 -1.0633 33 1 0.0095 -4.1075 -1.8163 34 1 -1.2700 -4.3841 -0.5872 35 1 1.1287 -5.6529 -0.3433 36 1 0.3305 -4.9732 1.1128 37 1 3.2084 -2.9552 1.8180 38 1 1.6544 -3.5840 2.4160 39 1 3.1586 -5.6938 1.2364 40 1 4.6769 -6.4075 5.4850 41 1 5.9497 -8.6058 6.7251 42 1 6.7938 -10.8367 6.3630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027981689.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:07 Heat of formation + Delta-G solvation = 5.573264 kcal Electronic energy + Delta-G solvation = -26864.659962 eV Core-core repulsion = 22937.141538 eV Total energy + Delta-G solvation = -3927.518423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.35234 -39.74082 -37.96334 -37.52177 -36.36420 -34.41695 -32.52245 -31.70758 -30.27470 -29.65859 -28.75724 -26.08721 -24.84666 -24.22534 -23.46441 -21.62079 -20.69497 -20.20512 -19.75937 -19.27747 -18.36765 -17.13641 -16.97776 -16.69826 -15.99771 -15.94297 -15.74381 -15.21341 -14.96091 -14.62510 -14.46030 -13.99040 -13.87390 -13.56050 -13.36564 -13.11106 -12.79620 -12.40363 -12.35991 -12.11408 -11.91922 -11.79538 -11.36780 -11.27515 -10.97397 -10.80211 -10.67419 -10.29771 -10.19453 -10.08441 -9.91601 -9.83278 -9.80360 -9.71327 -9.29776 -8.82362 -8.61196 -8.15163 -6.88285 -5.78618 -3.15687 -0.25524 0.90147 1.00663 1.46296 1.80689 2.61719 2.99569 3.10915 3.20107 3.38978 3.44845 3.46457 4.03917 4.19116 4.45657 4.51096 4.57467 4.77744 5.13335 5.28471 5.35057 5.36385 5.46498 5.53736 5.58419 5.67939 5.77964 5.81293 5.99962 6.08763 6.21454 6.21911 6.42527 6.45544 6.47856 6.51106 6.64795 6.73630 6.99181 7.49972 7.50409 7.52491 7.58860 7.77434 8.17049 8.23673 9.14861 9.75305 10.41951 11.32887 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.020517 B = 0.002287 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.408692 B =12238.938684 C =13012.325962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.235 4.235 8 H 0.077 0.923 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.129 4.129 13 C 0.151 3.849 14 H 0.039 0.961 15 C 0.108 3.892 16 N -0.713 5.713 17 C 0.578 3.422 18 O -0.520 6.520 19 C -0.207 4.207 20 C -0.072 4.072 21 C -0.001 4.001 22 C -0.172 4.172 23 C 0.106 3.894 24 N -0.619 5.619 25 H 0.419 0.581 26 C 0.570 3.430 27 O -0.540 6.540 28 C -0.278 4.278 29 S 0.250 5.750 30 H 0.254 0.746 31 H 0.026 0.974 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.394 0.606 40 H 0.161 0.839 41 H 0.153 0.847 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.773 -22.804 10.403 27.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.364 4.364 8 H 0.094 0.906 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.167 4.167 13 C 0.042 3.958 14 H 0.057 0.943 15 C -0.017 4.017 16 N -0.363 5.363 17 C 0.361 3.639 18 O -0.397 6.397 19 C -0.328 4.328 20 C -0.105 4.105 21 C -0.018 4.018 22 C -0.198 4.198 23 C -0.018 4.018 24 N -0.256 5.256 25 H 0.257 0.743 26 C 0.365 3.635 27 O -0.420 6.420 28 C -0.399 4.399 29 S 0.520 5.480 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.228 0.772 40 H 0.178 0.822 41 H 0.171 0.829 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 10.082 -22.187 8.731 25.887 hybrid contribution 1.056 0.347 1.407 1.793 sum 11.138 -21.840 10.138 26.530 Atomic orbital electron populations 1.69932 1.05023 1.25356 1.55801 1.24905 0.95691 0.97893 1.01344 0.86137 0.78804 0.83341 0.77590 1.21505 1.21576 1.20496 1.18993 0.90434 0.82153 1.44776 0.90567 1.44492 1.05791 1.00683 1.80208 1.21492 0.84561 0.90350 0.98946 1.23009 0.97470 0.99522 0.98689 1.22633 0.97101 0.97008 0.99913 1.21147 0.94553 0.88238 0.91854 0.94327 1.22402 0.97608 0.81702 0.99939 1.46086 1.59995 1.19723 1.10523 1.17084 0.78734 0.84484 0.83558 1.90844 1.56834 1.48300 1.43720 1.24593 1.08577 1.00335 0.99328 1.20070 0.97158 0.94626 0.98611 1.19315 0.96782 0.93127 0.92603 1.21367 1.05432 0.94265 0.98689 1.21457 0.98216 0.94472 0.87664 1.43009 1.53879 1.19303 1.09369 0.74278 1.15741 0.78798 0.85231 0.83754 1.91002 1.58527 1.67141 1.25346 1.24150 1.15136 1.00856 0.99786 1.84136 1.53008 1.02274 1.08575 0.93561 0.95629 0.90667 0.92229 0.92271 0.92300 0.91752 0.90969 0.91023 0.77221 0.82152 0.82931 0.81473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.40 10.53 55.49 0.58 -25.81 16 2 C 0.00 -0.03 5.47 -17.44 -0.10 -0.12 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.24 -6.36 9.76 -15.06 -0.15 -6.51 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.59 -14.37 3.13 -162.57 -0.51 -14.88 16 10 C 0.17 4.03 5.43 -2.53 -0.01 4.02 16 11 C -0.15 -2.69 7.09 -24.58 -0.17 -2.86 16 12 C -0.13 -2.12 6.10 -24.90 -0.15 -2.27 16 13 C 0.15 2.93 3.22 -66.95 -0.22 2.71 16 14 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 15 C 0.11 2.04 5.07 -4.04 -0.02 2.02 16 16 N -0.71 -10.81 5.32 -61.43 -0.33 -11.14 16 17 C 0.58 9.09 7.80 -12.58 -0.10 8.99 16 18 O -0.52 -10.04 16.74 5.27 0.09 -9.95 16 19 C -0.21 -2.59 6.36 -37.32 -0.24 -2.83 16 20 C -0.07 -0.79 9.82 -40.50 -0.40 -1.19 16 21 C 0.00 -0.01 6.08 -105.08 -0.64 -0.65 16 22 C -0.17 -1.00 10.29 -37.17 -0.38 -1.39 16 23 C 0.11 0.42 11.11 -16.92 -0.19 0.23 16 24 N -0.62 -3.87 5.23 -14.86 -0.08 -3.94 16 25 H 0.42 1.52 8.87 -40.82 -0.36 1.16 16 26 C 0.57 6.22 7.71 -15.08 -0.12 6.11 16 27 O -0.54 -7.68 17.89 4.96 0.09 -7.59 16 28 C -0.28 -3.10 6.48 -37.76 -0.24 -3.35 16 29 S 0.25 2.80 22.27 -107.50 -2.39 0.40 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 32 H 0.08 1.98 6.85 -51.93 -0.36 1.62 16 33 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.05 7.81 -51.93 -0.41 0.64 16 37 H 0.07 1.53 7.92 -51.93 -0.41 1.12 16 38 H 0.07 1.50 8.08 -51.93 -0.42 1.08 16 39 H 0.39 4.97 7.40 -40.82 -0.30 4.67 16 40 H 0.16 1.63 7.98 -52.49 -0.42 1.21 16 41 H 0.15 0.50 8.06 -52.48 -0.42 0.07 16 42 H 0.17 -0.08 8.06 -52.49 -0.42 -0.51 16 LS Contribution 367.59 15.07 5.54 5.54 Total: -1.00 -35.05 367.59 -10.33 -45.37 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.18 Total: 2.19 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -3.12 Total: 2.90 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: -0.33 Total: -55.78 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.18 Total: -17.55 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -2.39 Total: 0.40 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.05 -10.33 -45.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027981689.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.948 kcal (2) G-P(sol) polarization free energy of solvation -35.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds