Wall clock time and date at job start Wed Apr 1 2020 04:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86808 * 120.00043 * 2 1 4 4 H 1.48506 * 109.46931 * 270.00372 * 3 2 1 5 5 H 1.48502 * 109.46911 * 29.99891 * 3 2 1 6 6 H 1.48500 * 109.47260 * 150.00157 * 3 2 1 7 7 C 1.38808 * 120.00376 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00101 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99628 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.64935 * 13.56435 * 9 7 2 11 11 C 1.54912 * 104.83437 * 155.90552 * 10 9 7 12 12 C 1.55159 * 101.58141 * 37.00714 * 11 10 9 13 13 C 1.47031 * 125.64805 * 193.60384 * 9 7 2 14 14 H 1.09004 * 110.00624 * 300.51501 * 13 9 7 15 15 C 1.52996 * 109.87946 * 61.60594 * 13 9 7 16 16 N 1.46503 * 109.46708 * 182.37892 * 15 13 9 17 17 C 1.34777 * 120.00011 * 185.08684 * 16 15 13 18 18 O 1.21612 * 119.99856 * 0.02562 * 17 16 15 19 19 C 1.47293 * 120.00245 * 180.02562 * 17 16 15 20 20 C 1.34219 * 124.79566 * 179.72685 * 19 17 16 21 21 C 1.39569 * 115.53395 * 179.79329 * 20 19 17 22 22 C 1.47756 * 129.59577 * 180.19304 * 21 20 19 23 23 C 1.34051 * 119.55717 * 180.30614 * 22 21 20 24 24 N 1.36563 * 121.42690 * 359.97438 * 23 22 21 25 25 H 0.96994 * 119.16257 * 180.02562 * 24 23 22 26 26 C 1.34305 * 121.67486 * 0.04054 * 24 23 22 27 27 O 1.21949 * 119.69294 * 179.97438 * 26 24 23 28 28 C 1.39389 * 112.90126 * 0.49024 * 21 20 19 29 29 S 1.75560 * 124.78981 * 0.03109 * 19 17 16 30 30 H 0.97002 * 120.00528 * 359.97438 * 1 2 3 31 31 H 1.08999 * 110.36599 * 274.74158 * 10 9 7 32 32 H 1.09004 * 110.36664 * 37.06982 * 10 9 7 33 33 H 1.09008 * 111.00561 * 278.94166 * 11 10 9 34 34 H 1.08991 * 111.00876 * 155.08095 * 11 10 9 35 35 H 1.08995 * 110.72233 * 206.13475 * 12 11 10 36 36 H 1.09002 * 110.71853 * 82.86190 * 12 11 10 37 37 H 1.08996 * 109.47658 * 302.38100 * 15 13 9 38 38 H 1.08997 * 109.47163 * 62.38695 * 15 13 9 39 39 H 0.96998 * 120.00190 * 5.09359 * 16 15 13 40 40 H 1.08000 * 122.22930 * 0.02562 * 20 19 17 41 41 H 1.08003 * 120.21869 * 0.28509 * 22 21 20 42 42 H 1.07993 * 119.29059 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1127 -2.5497 -0.2810 11 6 -0.2603 -4.0141 -0.7643 12 6 0.7666 -4.7456 0.1401 13 6 1.9029 -3.7108 0.2800 14 1 2.6952 -3.9312 -0.4355 15 6 2.4635 -3.7425 1.7032 16 7 3.0866 -5.0446 1.9535 17 6 3.5599 -5.3405 3.1803 18 8 3.4693 -4.5268 4.0795 19 6 4.1869 -6.6493 3.4319 20 6 4.6937 -7.0418 4.6111 21 6 5.2391 -8.3263 4.6339 22 6 5.8676 -9.0629 5.7500 23 6 6.3356 -10.3021 5.5441 24 7 6.2446 -10.9036 4.3215 25 1 6.5938 -11.8015 4.2093 26 6 5.6842 -10.2833 3.2703 27 8 5.6223 -10.8542 2.1945 28 6 5.1634 -8.9698 3.3998 29 16 4.3837 -7.9135 2.2296 30 1 -0.4851 0.8400 0.0004 31 1 -0.6964 -2.3888 0.6254 32 1 -0.4267 -1.8586 -1.0633 33 1 0.0095 -4.1075 -1.8163 34 1 -1.2700 -4.3841 -0.5872 35 1 1.1287 -5.6529 -0.3433 36 1 0.3305 -4.9732 1.1128 37 1 3.2084 -2.9552 1.8180 38 1 1.6544 -3.5840 2.4160 39 1 3.1586 -5.6938 1.2364 40 1 4.6769 -6.4075 5.4850 41 1 5.9497 -8.6058 6.7251 42 1 6.7938 -10.8367 6.3630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027981689.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:06 Heat of formation + Delta-G solvation = -19.744640 kcal Electronic energy + Delta-G solvation = -26865.757828 eV Core-core repulsion = 22937.141538 eV Total energy + Delta-G solvation = -3928.616290 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.04146 -41.04451 -39.39549 -38.56380 -37.11163 -35.91363 -34.43894 -32.51019 -31.47821 -30.94536 -30.29136 -27.24881 -26.54296 -25.41489 -24.47526 -22.62186 -22.03199 -21.63310 -21.18623 -20.11967 -19.40320 -18.60287 -17.96668 -17.69351 -17.20514 -16.89785 -16.77827 -16.60311 -16.46954 -15.98608 -15.69001 -15.34713 -14.99619 -14.82638 -14.57471 -14.02541 -13.80397 -13.77798 -13.67351 -13.42902 -13.05803 -13.04051 -13.00145 -12.88720 -12.66602 -12.12692 -12.03578 -11.88840 -11.77471 -11.50789 -11.49066 -11.43603 -11.38313 -10.69127 -10.57377 -10.27326 -10.10721 -8.88884 -8.79802 -7.88739 -5.26783 -1.10500 0.06790 0.40960 0.63927 0.98954 1.44418 1.46312 1.54733 1.85511 1.89782 2.05747 2.46191 2.48425 3.29953 3.34410 3.54632 3.68817 3.74719 3.81245 3.92291 3.94070 4.22881 4.23890 4.39990 4.48396 4.52916 4.64762 4.69463 4.89999 4.93634 4.96674 5.01021 5.08930 5.12825 5.22864 5.24617 5.45470 5.51143 5.65717 5.75898 5.77392 5.89054 6.21061 6.28521 6.84190 6.92691 7.08009 7.74547 8.40252 9.21728 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.020517 B = 0.002287 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.408692 B =12238.938684 C =13012.325962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.059 4.059 3 Si 0.973 3.027 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.272 1.272 7 C -0.241 4.241 8 H 0.078 0.922 9 N -0.609 5.609 10 C 0.173 3.827 11 C -0.133 4.133 12 C -0.117 4.117 13 C 0.146 3.854 14 H 0.052 0.948 15 C 0.128 3.872 16 N -0.701 5.701 17 C 0.581 3.419 18 O -0.563 6.563 19 C -0.225 4.225 20 C -0.063 4.063 21 C 0.005 3.995 22 C -0.188 4.188 23 C 0.132 3.868 24 N -0.602 5.602 25 H 0.434 0.566 26 C 0.560 3.440 27 O -0.586 6.586 28 C -0.302 4.302 29 S 0.242 5.758 30 H 0.248 0.752 31 H -0.007 1.007 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.043 0.957 38 H 0.046 0.954 39 H 0.410 0.590 40 H 0.167 0.833 41 H 0.184 0.816 42 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.832 -26.076 11.996 31.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.253 4.253 3 Si 0.801 3.199 4 H -0.209 1.209 5 H -0.221 1.221 6 H -0.197 1.197 7 C -0.370 4.370 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.048 3.952 11 C -0.172 4.172 12 C -0.155 4.155 13 C 0.039 3.961 14 H 0.070 0.930 15 C 0.003 3.997 16 N -0.353 5.353 17 C 0.367 3.633 18 O -0.443 6.443 19 C -0.346 4.346 20 C -0.096 4.096 21 C -0.012 4.012 22 C -0.212 4.212 23 C 0.008 3.992 24 N -0.238 5.238 25 H 0.275 0.725 26 C 0.356 3.644 27 O -0.471 6.471 28 C -0.423 4.423 29 S 0.513 5.487 30 H 0.057 0.943 31 H 0.011 0.989 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.246 0.754 40 H 0.185 0.815 41 H 0.202 0.798 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 12.183 -25.537 10.326 30.120 hybrid contribution 0.536 1.207 1.066 1.698 sum 12.719 -24.330 11.393 29.724 Atomic orbital electron populations 1.70136 1.06271 1.25421 1.57469 1.25675 0.96529 1.01000 1.02114 0.85173 0.77694 0.79462 0.77583 1.20925 1.22137 1.19721 1.19311 0.90798 0.83528 1.43356 0.90434 1.44736 1.06239 1.01783 1.80586 1.21301 0.83937 0.93473 0.96502 1.22876 0.99498 0.95393 0.99383 1.22631 0.95251 0.97350 1.00219 1.21344 0.96000 0.86893 0.91881 0.93041 1.21846 0.96069 0.82762 0.99068 1.45791 1.59611 1.18631 1.11242 1.17437 0.77850 0.85230 0.82786 1.90816 1.58554 1.50048 1.44894 1.24183 1.10294 0.99372 1.00788 1.20300 0.95890 0.95279 0.98167 1.19635 0.95858 0.92322 0.93377 1.21806 1.05735 0.94907 0.98787 1.22377 0.95504 0.93829 0.87455 1.43024 1.51844 1.19793 1.09181 0.72485 1.15847 0.79166 0.85175 0.84235 1.90975 1.60774 1.68059 1.27247 1.24302 1.16307 1.01438 1.00247 1.84011 1.54083 1.02081 1.08543 0.94275 0.98897 0.94215 0.91121 0.89844 0.88010 0.91490 0.93830 0.93510 0.75399 0.81524 0.79847 0.75664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.01 10.53 21.65 0.23 -56.78 16 2 C -0.06 -3.40 5.47 84.86 0.46 -2.94 16 3 Si 0.97 46.42 29.55 68.60 2.03 48.45 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.24 -13.42 9.76 84.03 0.82 -12.60 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 9 N -0.61 -30.60 3.13 -668.24 -2.09 -32.69 16 10 C 0.17 8.42 5.43 86.86 0.47 8.89 16 11 C -0.13 -4.65 7.09 31.99 0.23 -4.42 16 12 C -0.12 -3.62 6.10 31.78 0.19 -3.43 16 13 C 0.15 5.65 3.22 45.34 0.15 5.80 16 14 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 15 C 0.13 4.99 5.07 86.38 0.44 5.42 16 16 N -0.70 -21.34 5.32 -466.51 -2.48 -23.82 16 17 C 0.58 18.56 7.80 86.62 0.68 19.24 16 18 O -0.56 -22.44 16.74 -4.07 -0.07 -22.51 16 19 C -0.23 -5.59 6.36 23.74 0.15 -5.44 16 20 C -0.06 -1.31 9.82 21.67 0.21 -1.09 16 21 C 0.00 0.08 6.08 -20.16 -0.12 -0.05 16 22 C -0.19 -1.35 10.29 23.83 0.25 -1.11 16 23 C 0.13 0.32 11.11 83.00 0.92 1.24 16 24 N -0.60 -5.31 5.23 -319.29 -1.67 -6.98 16 25 H 0.43 1.48 8.87 -92.71 -0.82 0.66 16 26 C 0.56 11.28 7.71 85.22 0.66 11.94 16 27 O -0.59 -16.40 17.89 -5.15 -0.09 -16.49 16 28 C -0.30 -6.33 6.48 23.45 0.15 -6.18 16 29 S 0.24 5.32 22.27 -56.49 -1.26 4.07 16 30 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 31 H -0.01 -0.38 8.08 -2.39 -0.02 -0.40 16 32 H 0.04 2.18 6.85 -2.39 -0.02 2.17 16 33 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 34 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.07 2.07 7.81 -2.39 -0.02 2.05 16 37 H 0.04 1.93 7.92 -2.39 -0.02 1.91 16 38 H 0.05 2.04 8.08 -2.39 -0.02 2.03 16 39 H 0.41 9.97 7.40 -92.71 -0.69 9.28 16 40 H 0.17 3.19 7.98 -2.91 -0.02 3.17 16 41 H 0.18 0.20 8.06 -2.91 -0.02 0.18 16 42 H 0.23 -1.99 8.06 -2.91 -0.02 -2.01 16 Total: -1.00 -82.96 367.59 -0.17 -83.13 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -0.42 Total: 8.33 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 5.65 Total: 15.29 kcal Atomic # 7 Polarization: -114.25 SS G_CDS: -6.01 Total: -120.27 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -0.16 Total: -39.00 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Atomic # 16 Polarization: 5.32 SS G_CDS: -1.26 Total: 4.07 kcal Total: -82.96 -0.17 -83.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027981689.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.389 kcal (2) G-P(sol) polarization free energy of solvation -82.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds