Wall clock time and date at job start Wed Apr 1 2020 04:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99966 * 2 1 4 4 H 1.48502 * 109.47200 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47178 * 300.00071 * 3 2 1 6 6 H 1.48493 * 109.47033 * 60.00245 * 3 2 1 7 7 C 1.38815 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99971 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64893 * 359.97438 * 9 7 2 11 11 C 1.54329 * 107.27245 * 178.97818 * 10 9 7 12 12 C 1.55161 * 102.94031 * 337.80908 * 11 10 9 13 13 H 1.09003 * 111.00209 * 277.38842 * 12 11 10 14 14 C 1.52998 * 111.00572 * 153.57679 * 12 11 10 15 15 N 1.46494 * 109.47194 * 178.17593 * 14 12 11 16 16 C 1.34775 * 119.99939 * 179.97438 * 15 14 12 17 17 O 1.21632 * 119.99932 * 0.02562 * 16 15 14 18 18 C 1.47304 * 119.99899 * 180.02562 * 16 15 14 19 19 C 1.35169 * 122.41195 * 180.02562 * 18 16 15 20 20 S 1.71010 * 109.15813 * 179.78841 * 19 18 16 21 21 C 1.76004 * 90.59500 * 0.29208 * 20 19 18 22 22 C 1.47129 * 125.32975 * 179.97438 * 21 20 19 23 23 C 1.36246 * 125.96190 * 359.97438 * 22 21 20 24 24 C 1.40763 * 106.72553 * 180.15179 * 23 22 21 25 25 C 1.34842 * 107.07032 * 359.57198 * 24 23 22 26 26 O 1.34237 * 108.72121 * 0.26571 * 25 24 23 27 27 N 1.30123 * 109.33912 * 359.70373 * 21 20 19 28 28 C 1.47471 * 125.63235 * 179.97438 * 9 7 2 29 29 H 0.96999 * 119.99859 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.88107 * 59.56004 * 10 9 7 31 31 H 1.08995 * 110.01231 * 298.46666 * 10 9 7 32 32 H 1.08995 * 110.71963 * 219.44680 * 11 10 9 33 33 H 1.08998 * 110.87392 * 96.24077 * 11 10 9 34 34 H 1.09004 * 109.46769 * 58.17645 * 14 12 11 35 35 H 1.08997 * 109.46836 * 298.17781 * 14 12 11 36 36 H 0.97000 * 120.00140 * 0.02562 * 15 14 12 37 37 H 1.07992 * 125.42487 * 0.05672 * 19 18 16 38 38 H 1.07998 * 126.63442 * 359.97438 * 23 22 21 39 39 H 1.08002 * 126.46621 * 179.84255 * 24 23 22 40 40 H 1.08001 * 125.63556 * 180.24740 * 25 24 23 41 41 H 1.09001 * 110.34882 * 85.24355 * 28 9 7 42 42 H 1.09002 * 110.40231 * 322.91774 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1375 -2.5327 0.0005 11 6 -0.4485 -4.0441 -0.0262 12 6 0.8515 -4.6560 -0.6119 13 1 0.8554 -4.5967 -1.7003 14 6 1.0369 -6.1008 -0.1437 15 7 2.2483 -6.6588 -0.7497 16 6 2.6146 -7.9272 -0.4785 17 8 1.9391 -8.6087 0.2690 18 6 3.8330 -8.4881 -1.0873 19 6 4.2452 -9.7533 -0.8498 20 16 5.6831 -10.0491 -1.7269 21 6 5.6493 -8.4113 -2.3704 22 6 6.6428 -7.8386 -3.2922 23 6 7.7371 -8.4807 -3.7886 24 6 8.4035 -7.5613 -4.6205 25 6 7.6880 -6.4185 -4.6005 26 8 6.6258 -6.5893 -3.7977 27 7 4.6049 -7.7880 -1.9077 28 6 1.9340 -3.7313 -0.0016 29 1 -0.4850 0.8400 0.0004 30 1 -0.5581 -2.0520 -0.8826 31 1 -0.5560 -2.0840 0.9014 32 1 -1.2989 -4.2514 -0.6756 33 1 -0.6326 -4.4206 0.9800 34 1 0.1735 -6.6940 -0.4451 35 1 1.1310 -6.1216 0.9420 36 1 2.7872 -6.1152 -1.3455 37 1 3.7438 -10.4655 -0.2114 38 1 8.0370 -9.4973 -3.5814 39 1 9.3136 -7.7391 -5.1743 40 1 7.9298 -5.5152 -5.1408 41 1 2.1684 -4.0421 1.0165 42 1 2.8328 -3.7409 -0.6183 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028767132.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:04 Heat of formation + Delta-G solvation = 53.752605 kcal Electronic energy + Delta-G solvation = -26689.292384 eV Core-core repulsion = 22763.863174 eV Total energy + Delta-G solvation = -3925.429210 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -42.92557 -40.63359 -38.80272 -37.54019 -34.67860 -33.56708 -32.49714 -32.12391 -29.84901 -29.33550 -28.38801 -26.37655 -25.23694 -23.93526 -22.70671 -22.28344 -20.92039 -20.18666 -19.90839 -19.46342 -18.96390 -17.78539 -16.98520 -16.71278 -16.55290 -15.94242 -15.74613 -15.47507 -14.91257 -14.58199 -14.26088 -14.03028 -13.81679 -13.51851 -13.35764 -13.34117 -12.98097 -12.92839 -12.38473 -12.29405 -11.97185 -11.72404 -11.36165 -10.86798 -10.78754 -10.60767 -10.53676 -10.39457 -10.27970 -10.16862 -10.02047 -9.87620 -9.79509 -9.76872 -9.62319 -8.97118 -8.57283 -8.46247 -6.79528 -5.68166 -3.01281 -0.22475 0.49759 1.07265 1.11349 1.86797 2.32899 2.63283 3.16541 3.24937 3.41738 3.47103 3.49721 3.52669 4.36071 4.47827 4.52216 4.63675 4.81136 4.84082 5.12956 5.26675 5.28771 5.29421 5.43359 5.46998 5.56918 5.57727 5.71581 5.92886 5.95062 6.05903 6.08985 6.38137 6.42762 6.55144 6.57271 6.58750 6.72464 6.95400 6.99832 7.56752 7.59986 7.66423 7.86218 8.14773 8.29316 9.25692 9.85919 10.52280 11.43790 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010287 B = 0.002632 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.218451 B =10634.907139 C =13021.435504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.178 3.822 11 C -0.134 4.134 12 C -0.118 4.118 13 H 0.080 0.920 14 C 0.131 3.869 15 N -0.703 5.703 16 C 0.589 3.411 17 O -0.539 6.539 18 C 0.020 3.980 19 C -0.217 4.217 20 S 0.223 5.777 21 C 0.108 3.892 22 C 0.048 3.952 23 C -0.168 4.168 24 C -0.216 4.216 25 C -0.010 4.010 26 O -0.147 6.147 27 N -0.421 5.421 28 C 0.142 3.858 29 H 0.251 0.749 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.412 0.588 37 H 0.197 0.803 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.212 0.788 41 H 0.019 0.981 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.852 -22.747 -8.691 28.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.053 3.947 11 C -0.173 4.173 12 C -0.138 4.138 13 H 0.099 0.901 14 C 0.008 3.992 15 N -0.353 5.353 16 C 0.371 3.629 17 O -0.417 6.417 18 C -0.116 4.116 19 C -0.359 4.359 20 S 0.481 5.519 21 C -0.167 4.167 22 C -0.006 4.006 23 C -0.191 4.191 24 C -0.235 4.235 25 C -0.081 4.081 26 O -0.041 6.041 27 N -0.137 5.137 28 C 0.015 3.985 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.248 0.752 37 H 0.214 0.786 38 H 0.173 0.827 39 H 0.175 0.825 40 H 0.228 0.772 41 H 0.037 0.963 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.566 -23.081 -8.294 28.525 hybrid contribution 0.069 1.509 0.043 1.512 sum 14.634 -21.571 -8.251 27.342 Atomic orbital electron populations 1.69977 1.04868 1.24844 1.57343 1.24805 0.95731 0.97657 1.02403 0.86044 0.78719 0.83809 0.77211 1.20521 1.21776 1.21783 1.19114 0.90468 0.82445 1.43425 0.90438 1.44495 1.01729 0.99878 1.87146 1.21138 0.84328 0.88133 1.01119 1.22859 0.95356 0.99412 0.99678 1.22617 0.98665 0.91848 1.00651 0.90123 1.21494 0.85814 0.93713 0.98188 1.45931 1.27763 1.12836 1.48739 1.17058 0.82808 0.82165 0.80830 1.90813 1.53712 1.60084 1.37053 1.20240 0.99039 0.91688 1.00683 1.26684 1.01541 1.01325 1.06321 1.83703 1.19560 1.11300 1.37355 1.24303 0.96060 0.94596 1.01771 1.18830 0.96523 0.84508 1.00742 1.21808 0.95077 1.01385 1.00821 1.21755 1.03431 0.93577 1.04749 1.24442 0.86661 1.01160 0.95809 1.84235 1.41757 1.29329 1.48817 1.67196 1.02985 1.34056 1.09437 1.21583 0.94039 0.86090 0.96751 0.93850 0.93558 0.93888 0.91959 0.92171 0.91336 0.91023 0.75180 0.78559 0.82687 0.82524 0.77179 0.96317 0.94488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.55 10.31 55.49 0.57 -26.98 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 3 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.23 -6.45 10.28 -15.06 -0.15 -6.61 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.61 -15.85 3.40 -170.04 -0.58 -16.42 16 10 C 0.18 4.38 5.37 -3.06 -0.02 4.37 16 11 C -0.13 -2.51 6.42 -24.89 -0.16 -2.67 16 12 C -0.12 -2.07 3.07 -88.48 -0.27 -2.34 16 13 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 14 C 0.13 2.02 5.12 -4.05 -0.02 2.00 16 15 N -0.70 -10.50 5.44 -61.42 -0.33 -10.84 16 16 C 0.59 8.96 7.79 -12.57 -0.10 8.87 16 17 O -0.54 -9.33 16.65 5.25 0.09 -9.24 16 18 C 0.02 0.26 6.64 -84.93 -0.56 -0.30 16 19 C -0.22 -2.15 10.56 29.64 0.31 -1.84 16 20 S 0.22 1.64 22.93 -107.50 -2.46 -0.82 16 21 C 0.11 1.17 7.46 -14.67 -0.11 1.07 16 22 C 0.05 0.49 7.24 -36.69 -0.27 0.23 16 23 C -0.17 -1.26 10.63 -39.34 -0.42 -1.68 16 24 C -0.22 -1.42 10.88 -39.83 -0.43 -1.85 16 25 C -0.01 -0.07 12.08 29.53 0.36 0.28 16 26 O -0.15 -1.65 10.67 4.56 0.05 -1.61 16 27 N -0.42 -5.58 10.08 -8.28 -0.08 -5.67 16 28 C 0.14 2.99 6.56 -2.51 -0.02 2.98 16 29 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.05 1.26 7.38 -51.93 -0.38 0.87 16 31 H 0.04 1.17 7.50 -51.93 -0.39 0.78 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.15 8.03 -51.93 -0.42 0.74 16 36 H 0.41 6.04 7.91 -40.82 -0.32 5.72 16 37 H 0.20 1.65 7.99 -52.49 -0.42 1.23 16 38 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.16 0.61 8.06 -52.49 -0.42 0.18 16 40 H 0.21 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.02 0.41 7.96 -51.93 -0.41 -0.01 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 373.64 15.07 5.63 5.63 Total: -1.00 -34.83 373.64 -9.37 -44.20 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -5.27 Total: 2.19 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.95 Total: 2.11 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -0.42 Total: -59.90 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.14 Total: -10.85 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.46 Total: -0.82 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.83 -9.37 -44.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028767132.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.951 kcal (2) G-P(sol) polarization free energy of solvation -34.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds