Wall clock time and date at job start Wed Apr 1 2020 04:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99966 * 2 1 4 4 H 1.48502 * 109.47200 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47178 * 300.00071 * 3 2 1 6 6 H 1.48493 * 109.47033 * 60.00245 * 3 2 1 7 7 C 1.38815 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99971 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64893 * 359.97438 * 9 7 2 11 11 C 1.54329 * 107.27245 * 178.97818 * 10 9 7 12 12 C 1.55161 * 102.94031 * 337.80908 * 11 10 9 13 13 H 1.09003 * 111.00209 * 277.38842 * 12 11 10 14 14 C 1.52998 * 111.00572 * 153.57679 * 12 11 10 15 15 N 1.46494 * 109.47194 * 178.17593 * 14 12 11 16 16 C 1.34775 * 119.99939 * 179.97438 * 15 14 12 17 17 O 1.21632 * 119.99932 * 0.02562 * 16 15 14 18 18 C 1.47304 * 119.99899 * 180.02562 * 16 15 14 19 19 C 1.35169 * 122.41195 * 180.02562 * 18 16 15 20 20 S 1.71010 * 109.15813 * 179.78841 * 19 18 16 21 21 C 1.76004 * 90.59500 * 0.29208 * 20 19 18 22 22 C 1.47129 * 125.32975 * 179.97438 * 21 20 19 23 23 C 1.36246 * 125.96190 * 359.97438 * 22 21 20 24 24 C 1.40763 * 106.72553 * 180.15179 * 23 22 21 25 25 C 1.34842 * 107.07032 * 359.57198 * 24 23 22 26 26 O 1.34237 * 108.72121 * 0.26571 * 25 24 23 27 27 N 1.30123 * 109.33912 * 359.70373 * 21 20 19 28 28 C 1.47471 * 125.63235 * 179.97438 * 9 7 2 29 29 H 0.96999 * 119.99859 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.88107 * 59.56004 * 10 9 7 31 31 H 1.08995 * 110.01231 * 298.46666 * 10 9 7 32 32 H 1.08995 * 110.71963 * 219.44680 * 11 10 9 33 33 H 1.08998 * 110.87392 * 96.24077 * 11 10 9 34 34 H 1.09004 * 109.46769 * 58.17645 * 14 12 11 35 35 H 1.08997 * 109.46836 * 298.17781 * 14 12 11 36 36 H 0.97000 * 120.00140 * 0.02562 * 15 14 12 37 37 H 1.07992 * 125.42487 * 0.05672 * 19 18 16 38 38 H 1.07998 * 126.63442 * 359.97438 * 23 22 21 39 39 H 1.08002 * 126.46621 * 179.84255 * 24 23 22 40 40 H 1.08001 * 125.63556 * 180.24740 * 25 24 23 41 41 H 1.09001 * 110.34882 * 85.24355 * 28 9 7 42 42 H 1.09002 * 110.40231 * 322.91774 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1375 -2.5327 0.0005 11 6 -0.4485 -4.0441 -0.0262 12 6 0.8515 -4.6560 -0.6119 13 1 0.8554 -4.5967 -1.7003 14 6 1.0369 -6.1008 -0.1437 15 7 2.2483 -6.6588 -0.7497 16 6 2.6146 -7.9272 -0.4785 17 8 1.9391 -8.6087 0.2690 18 6 3.8330 -8.4881 -1.0873 19 6 4.2452 -9.7533 -0.8498 20 16 5.6831 -10.0491 -1.7269 21 6 5.6493 -8.4113 -2.3704 22 6 6.6428 -7.8386 -3.2922 23 6 7.7371 -8.4807 -3.7886 24 6 8.4035 -7.5613 -4.6205 25 6 7.6880 -6.4185 -4.6005 26 8 6.6258 -6.5893 -3.7977 27 7 4.6049 -7.7880 -1.9077 28 6 1.9340 -3.7313 -0.0016 29 1 -0.4850 0.8400 0.0004 30 1 -0.5581 -2.0520 -0.8826 31 1 -0.5560 -2.0840 0.9014 32 1 -1.2989 -4.2514 -0.6756 33 1 -0.6326 -4.4206 0.9800 34 1 0.1735 -6.6940 -0.4451 35 1 1.1310 -6.1216 0.9420 36 1 2.7872 -6.1152 -1.3455 37 1 3.7438 -10.4655 -0.2114 38 1 8.0370 -9.4973 -3.5814 39 1 9.3136 -7.7391 -5.1743 40 1 7.9298 -5.5152 -5.1408 41 1 2.1684 -4.0421 1.0165 42 1 2.8328 -3.7409 -0.6183 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028767132.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:03 Heat of formation + Delta-G solvation = 29.658419 kcal Electronic energy + Delta-G solvation = -26690.337186 eV Core-core repulsion = 22763.863174 eV Total energy + Delta-G solvation = -3926.474012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.52882 -41.59715 -39.94467 -39.12562 -36.13976 -34.35419 -34.16945 -32.86591 -31.68367 -30.09481 -29.97668 -27.72584 -26.69124 -25.28707 -23.83449 -22.88270 -22.08969 -21.63618 -21.33901 -20.49160 -19.81300 -18.86219 -18.45278 -17.90702 -17.25682 -17.05934 -16.83266 -16.67362 -16.41416 -16.08391 -15.61683 -15.29996 -14.97447 -14.59638 -14.53157 -14.00830 -13.96449 -13.85993 -13.85266 -13.46845 -13.45334 -13.11362 -13.06132 -12.78611 -12.68085 -12.01583 -11.97957 -11.89510 -11.59047 -11.50338 -11.34012 -11.31002 -11.11091 -10.88203 -10.73198 -10.47084 -10.15350 -9.10003 -8.92194 -7.86906 -5.22732 -0.93385 -0.16545 0.30338 0.33809 1.17942 1.44073 1.45487 1.55988 1.70294 2.05095 2.12938 2.24081 2.47834 2.74570 3.30942 3.55166 3.59622 3.77175 3.96103 3.98134 3.98682 4.03803 4.08612 4.15130 4.39835 4.55918 4.59526 4.67888 4.74229 4.74946 4.86804 4.93063 5.01024 5.01475 5.05246 5.25297 5.39161 5.43047 5.49155 5.66096 5.75915 5.97508 6.18154 6.20223 6.47272 7.00134 7.08836 7.75480 8.40217 9.23810 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010287 B = 0.002632 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.218451 B =10634.907139 C =13021.435504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.067 4.067 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.080 0.920 9 N -0.629 5.629 10 C 0.183 3.817 11 C -0.120 4.120 12 C -0.097 4.097 13 H 0.085 0.915 14 C 0.143 3.857 15 N -0.704 5.704 16 C 0.588 3.412 17 O -0.566 6.566 18 C -0.010 4.010 19 C -0.222 4.222 20 S 0.330 5.670 21 C 0.083 3.917 22 C 0.007 3.993 23 C -0.153 4.153 24 C -0.216 4.216 25 C -0.018 4.018 26 O -0.184 6.184 27 N -0.459 5.459 28 C 0.139 3.861 29 H 0.247 0.753 30 H 0.013 0.987 31 H 0.007 0.993 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.413 0.587 37 H 0.210 0.790 38 H 0.183 0.817 39 H 0.187 0.813 40 H 0.239 0.761 41 H 0.019 0.981 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.227 -25.031 -9.686 31.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.098 0.902 9 N -0.355 5.355 10 C 0.058 3.942 11 C -0.159 4.159 12 C -0.117 4.117 13 H 0.103 0.897 14 C 0.019 3.981 15 N -0.354 5.354 16 C 0.373 3.627 17 O -0.446 6.446 18 C -0.146 4.146 19 C -0.364 4.364 20 S 0.589 5.411 21 C -0.191 4.191 22 C -0.046 4.046 23 C -0.176 4.176 24 C -0.235 4.235 25 C -0.088 4.088 26 O -0.080 6.080 27 N -0.175 5.175 28 C 0.014 3.986 29 H 0.056 0.944 30 H 0.031 0.969 31 H 0.025 0.975 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.249 0.751 37 H 0.227 0.773 38 H 0.200 0.800 39 H 0.204 0.796 40 H 0.255 0.745 41 H 0.036 0.964 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 16.978 -25.405 -9.300 31.939 hybrid contribution -0.510 2.137 0.294 2.216 sum 16.468 -23.268 -9.006 29.895 Atomic orbital electron populations 1.70198 1.06294 1.25247 1.58287 1.25682 0.96686 1.01083 1.02555 0.84986 0.78118 0.79269 0.76817 1.19060 1.21639 1.21825 1.19494 0.90952 0.83837 1.43026 0.90232 1.44820 1.02604 1.01063 1.87010 1.20926 0.83607 0.91843 0.97806 1.22723 0.96790 0.94900 1.01456 1.22414 0.96323 0.92375 1.00548 0.89696 1.21302 0.86757 0.92196 0.97820 1.45901 1.27604 1.13103 1.48751 1.17375 0.83303 0.81761 0.80294 1.90780 1.54868 1.60616 1.38352 1.19958 0.99154 0.92942 1.02579 1.27031 1.02790 1.00529 1.06087 1.83248 1.16318 1.07363 1.34162 1.24713 0.95717 0.96776 1.01910 1.19166 0.97953 0.84959 1.02497 1.22236 0.93587 1.02415 0.99329 1.22174 1.04097 0.92819 1.04406 1.25197 0.85779 1.02738 0.95061 1.84202 1.43443 1.30314 1.49998 1.67135 1.04225 1.35580 1.10562 1.21717 0.95149 0.84753 0.96991 0.94351 0.96864 0.97488 0.89346 0.90653 0.89878 0.91514 0.75107 0.77279 0.79997 0.79586 0.74531 0.96351 0.94317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.77 10.31 21.65 0.22 -58.55 16 2 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 3 Si 0.98 47.00 29.55 68.60 2.03 49.03 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 7 C -0.24 -14.25 10.28 84.04 0.86 -13.38 16 8 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 9 N -0.63 -33.72 3.40 -691.89 -2.35 -36.07 16 10 C 0.18 9.34 5.37 86.73 0.47 9.81 16 11 C -0.12 -4.43 6.42 31.79 0.20 -4.22 16 12 C -0.10 -3.34 3.07 -9.40 -0.03 -3.37 16 13 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 14 C 0.14 4.27 5.12 86.38 0.44 4.71 16 15 N -0.70 -21.01 5.44 -466.49 -2.54 -23.55 16 16 C 0.59 17.92 7.79 86.63 0.68 18.60 16 17 O -0.57 -19.49 16.65 -4.13 -0.07 -19.55 16 18 C -0.01 -0.26 6.64 40.70 0.27 0.01 16 19 C -0.22 -4.08 10.56 67.11 0.71 -3.37 16 20 S 0.33 3.99 22.93 -56.49 -1.30 2.70 16 21 C 0.08 1.74 7.46 87.28 0.65 2.39 16 22 C 0.01 0.14 7.24 24.14 0.17 0.32 16 23 C -0.15 -1.92 10.63 22.42 0.24 -1.68 16 24 C -0.22 -2.27 10.88 22.11 0.24 -2.03 16 25 C -0.02 -0.24 12.08 67.04 0.81 0.57 16 26 O -0.18 -4.13 10.67 -6.60 -0.07 -4.20 16 27 N -0.46 -12.25 10.08 -180.10 -1.82 -14.07 16 28 C 0.14 5.94 6.56 86.84 0.57 6.51 16 29 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 30 H 0.01 0.75 7.38 -2.39 -0.02 0.73 16 31 H 0.01 0.39 7.50 -2.39 -0.02 0.38 16 32 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.07 2.57 8.04 -2.39 -0.02 2.55 16 34 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 35 H 0.07 2.09 8.03 -2.39 -0.02 2.07 16 36 H 0.41 12.29 7.91 -92.71 -0.73 11.56 16 37 H 0.21 3.14 7.99 -2.91 -0.02 3.12 16 38 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 39 H 0.19 0.73 8.06 -2.91 -0.02 0.71 16 40 H 0.24 1.39 8.06 -2.91 -0.02 1.36 16 41 H 0.02 0.80 7.96 -2.39 -0.02 0.78 16 42 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -79.30 373.64 1.19 -78.11 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.33 Total: 14.78 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 6.75 Total: 11.38 kcal Atomic # 7 Polarization: -125.75 SS G_CDS: -6.48 Total: -132.23 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.14 Total: -23.76 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.30 Total: 2.70 kcal Total: -79.30 1.19 -78.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028767132.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.769 kcal (2) G-P(sol) polarization free energy of solvation -79.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds